View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2085R-Insertion-4 (Length: 414)
Name: NF2085R-Insertion-4
Description: NF2085R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085R-Insertion-4 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Complemental strand, 35627436 - 35627029
Alignment:
| Q |
8 |
atgaagtaattaatttcttcacgtaaaaagtaaccaaccattttgctgtaagaaagatgctaaagacagtgtctgcatattccagattgagagttgtcct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35627436 |
atgaagtaattaatttcttcacgtaaaaagtaaccaaccattttgctgtaagaaagatgctaatgacagtgtctgcatattccagattgagagttgtcct |
35627337 |
T |
|
| Q |
108 |
ccaccaccaaatttcagcaagtgatgtgcaatacactttgtcatgctttcaggtttgagtacaaattcattgaatattggattcaatatactttttgttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35627336 |
ccaccaccaaatttcagcaagtgatgtgcaatacactttgtcatgctttcaggtttgagtacaaattcattgaatattggattcaatatactttttgttc |
35627237 |
T |
|
| Q |
208 |
ttttccaatttaaggaatatactttagctagaatcttgaatgattttttc-ttttggtacaatgaatgttagataaatactcaatgtaatttaacttttt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35627236 |
ttttccaatttaaggaatatactttagctagaatcttggatgattttttctttttggtacaatgaatgttagataaatactcaatgtaatttaacttttt |
35627137 |
T |
|
| Q |
307 |
gttaaatattgcagcaagctgtacaaattgaaaatggcaactagtggaaaaatagcactttgctggtgaattattggttcatcacagggggaatccgaat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
35627136 |
gttaaatattgcagcaagctgtacaaattgaaaatggcaactagtggaaaaatagcactttgctggcgaattattggttcatcacaggggaaatccgaat |
35627037 |
T |
|
| Q |
407 |
tccatttg |
414 |
Q |
| |
|
|||||||| |
|
|
| T |
35627036 |
tccatttg |
35627029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 13387518 - 13387430
Alignment:
| Q |
292 |
gtaatttaactttttgttaaatattgcagcaagctgtacaaattgaaaatggcaactagtggaaaaatagcactttgctggtgaattat |
380 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| || ||||| | ||||||| |||| ||||||| |
|
|
| T |
13387518 |
gtaatttaactttttgttgaatattgcagcaatctgtacaaagtgaaaatggcaactggtagaaaagttgcactttactggcgaattat |
13387430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 47828950 - 47829009
Alignment:
| Q |
90 |
cagattgagagttgtcctccaccaccaaatttcagcaagtgatgtgcaatacactttgtc |
149 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||| || ||||||| |||||||||||| |
|
|
| T |
47828950 |
cagattgagagttgtattccaccaccaaatatcagatagcgatgtgcgatacactttgtc |
47829009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University