View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2085R-Insertion-5 (Length: 401)

Name: NF2085R-Insertion-5
Description: NF2085R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2085R-Insertion-5
NF2085R-Insertion-5
[»] chr3 (18 HSPs)
chr3 (9-258)||(24124264-24124513)
chr3 (9-258)||(25341757-25342004)
chr3 (12-258)||(26845341-26845585)
chr3 (9-258)||(11639437-11639683)
chr3 (9-258)||(19221599-19221842)
chr3 (12-251)||(50543697-50543935)
chr3 (9-239)||(8695314-8695542)
chr3 (9-239)||(9047201-9047429)
chr3 (9-154)||(33121740-33121885)
chr3 (9-258)||(47536740-47536985)
chr3 (9-258)||(32093340-32093582)
chr3 (9-154)||(36635010-36635155)
chr3 (184-258)||(32233676-32233749)
chr3 (26-153)||(46665053-46665180)
chr3 (184-251)||(49500930-49500996)
chr3 (33-147)||(46909114-46909228)
chr3 (184-251)||(43122275-43122341)
chr3 (184-251)||(46664955-46665021)
[»] chr7 (14 HSPs)
chr7 (9-258)||(4076744-4076992)
chr7 (9-243)||(28060062-28060295)
chr7 (79-258)||(18654325-18654503)
chr7 (9-154)||(34231271-34231416)
chr7 (9-251)||(7459094-7459333)
chr7 (9-258)||(29113972-29114218)
chr7 (79-258)||(46177725-46177902)
chr7 (175-258)||(20037588-20037670)
chr7 (175-258)||(20047719-20047801)
chr7 (26-153)||(10282260-10282387)
chr7 (193-258)||(23397268-23397331)
chr7 (96-153)||(44785062-44785119)
chr7 (184-251)||(10282419-10282485)
chr7 (201-258)||(9036298-9036353)
[»] chr4 (19 HSPs)
chr4 (9-258)||(18935136-18935385)
chr4 (9-258)||(18106979-18107225)
chr4 (9-258)||(12881108-12881355)
chr4 (12-258)||(53487379-53487622)
chr4 (9-258)||(53779514-53779762)
chr4 (9-154)||(30274235-30274380)
chr4 (9-154)||(42823016-42823161)
chr4 (9-251)||(31863744-31863983)
chr4 (9-258)||(10563732-10563978)
chr4 (9-154)||(449623-449768)
chr4 (9-154)||(34322742-34322887)
chr4 (9-137)||(20395185-20395313)
chr4 (9-251)||(42777717-42777955)
chr4 (43-258)||(52741295-52741506)
chr4 (9-258)||(29213404-29213651)
chr4 (79-258)||(1844750-1844928)
chr4 (50-154)||(55854366-55854470)
chr4 (175-258)||(19164457-19164538)
chr4 (84-251)||(34005372-34005536)
[»] chr1 (23 HSPs)
chr1 (268-401)||(1350382-1350515)
chr1 (9-251)||(47586798-47587039)
chr1 (9-258)||(49968797-49969044)
chr1 (12-258)||(41061570-41061814)
chr1 (9-251)||(25591897-25592136)
chr1 (9-258)||(9903688-9903934)
chr1 (9-239)||(17707485-17707713)
chr1 (9-149)||(41181787-41181927)
chr1 (9-258)||(30111347-30111593)
chr1 (13-154)||(47107107-47107248)
chr1 (9-153)||(10711536-10711680)
chr1 (43-258)||(40292542-40292753)
chr1 (45-251)||(10722517-10722718)
chr1 (17-153)||(21335653-21335789)
chr1 (16-251)||(12173683-12173918)
chr1 (12-71)||(26720354-26720413)
chr1 (26-153)||(28098404-28098531)
chr1 (174-258)||(47107251-47107334)
chr1 (26-98)||(21344198-21344270)
chr1 (26-98)||(21349063-21349135)
chr1 (204-258)||(41181683-41181736)
chr1 (177-258)||(10711694-10711773)
chr1 (201-258)||(1395048-1395103)
[»] chr5 (9 HSPs)
chr5 (9-258)||(40089807-40090056)
chr5 (12-258)||(20209145-20209389)
chr5 (9-258)||(4922705-4922951)
chr5 (9-258)||(4416123-4416369)
chr5 (9-258)||(6048707-6048940)
chr5 (9-258)||(34874862-34875107)
chr5 (9-258)||(7001188-7001432)
chr5 (27-153)||(20591709-20591835)
chr5 (202-258)||(8891966-8892021)
[»] chr8 (9 HSPs)
chr8 (9-258)||(45256251-45256495)
chr8 (12-251)||(26030969-26031206)
chr8 (9-132)||(23679757-23679880)
chr8 (9-251)||(17658310-17658548)
chr8 (174-258)||(10267576-10267659)
chr8 (79-258)||(29470691-29470866)
chr8 (26-153)||(36156730-36156857)
chr8 (26-153)||(11155091-11155218)
chr8 (223-258)||(31082242-31082277)
[»] chr6 (8 HSPs)
chr6 (9-258)||(17079614-17079860)
chr6 (12-258)||(26526001-26526245)
chr6 (12-258)||(17874227-17874471)
chr6 (10-153)||(9199676-9199819)
chr6 (36-154)||(33722625-33722743)
chr6 (9-137)||(11061279-11061407)
chr6 (181-258)||(6831525-6831600)
chr6 (201-254)||(21251971-21252022)
[»] chr2 (11 HSPs)
chr2 (9-258)||(3000171-3000417)
chr2 (98-258)||(18704305-18704464)
chr2 (12-219)||(30273507-30273714)
chr2 (113-258)||(9393007-9393150)
chr2 (79-258)||(24313916-24314093)
chr2 (9-154)||(7075684-7075829)
chr2 (9-153)||(1379655-1379799)
chr2 (24-153)||(11026673-11026802)
chr2 (102-153)||(36272972-36273023)
chr2 (201-258)||(7075583-7075638)
chr2 (181-258)||(22295924-22296000)
[»] scaffold0007 (1 HSPs)
scaffold0007 (9-251)||(181607-181846)
[»] scaffold0179 (1 HSPs)
scaffold0179 (12-258)||(6997-7242)
[»] scaffold0308 (1 HSPs)
scaffold0308 (9-258)||(11550-11795)
[»] scaffold0227 (1 HSPs)
scaffold0227 (203-251)||(8404-8450)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 9e-86; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 24124264 - 24124513
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||| ||||| || |||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| ||||||    
T  24124264 gtaacttatattcccatgttgttagataaagttaaatatatgtctttagcctggttgaaagccaaaaaggttgtttttaggtttggtacagataggtggt 24124363  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||||| ||||| ||  |||| |||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||  || || |||||    
T  24124364 gttcaagtccctttcgatacttgggcatcacttaatggtttgtttttggatgcttgtttgactgtttgtttttaaagtaattcctttgacacactttgtg 24124463  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24124464 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 24124513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 25341757 - 25342004
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||  |||||    
T  25341757 gtaacttctattcccaagttgttagataaaattaaatatatgtctttagcctggttgaaagccaaaaaggttgtttttaggtttggtacagatatgtggt 25341856  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    | ||||||| ||||||||| ||||||||| ||||||| |||| |||||| |  |||| |  || | ||||| ||||||| ||| ||| ||| ||||| ||    
T  25341857 gctcaagtccctttcaatgcttggacatcgcttaatgatttg-ttttggttatttgtatgactctatgtttgtaaagtagttcttttggcacaccttatg 25341955  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||| | | ||||||||||||||||||||||||| ||||||| ||||||    
T  25341956 ctaga-gtggttgcttttggtggttaatatatatttcatttttgattgtt 25342004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 258
Target Start/End: Complemental strand, 26845585 - 26845341
Alignment:
Q  12 acttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgtt 111  Q
    ||||||||||||| |||| || |||||||||||| |||||||||||| ||||||||||||       ||||||||||||||||||||||| ||||||| |    
T  26845585 acttctattctcaggttgttacataaagttaaatttatgtctttagcatggttgaaagccaaaaaggttgtttttaggtttggtacagataggtggtgct 26845486  T
Q  112 caagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctt---tctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||  || ||||| ||||||||| |||||||||||| | |||| || |||| ||   ||||||  ||| ||||||||||| ||||||| ||||||||    
T  26845485 caagtcctttccaatgcttggacatcgcttaatggtttg-tattggttgtttgttttgactctgtt--tttgtaaagtaattcttttagcacaccttgtg 26845389  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  26845388 ctagaggag-ttgcttttggt-gttaatatatattccatttttgattgtt 26845341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 11639683 - 11639437
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||       | ||||||||||||||| ||||| ||||||    
T  11639683 gtaacttctattcccaggttgttagataaagttaaatatatgtctttagcctggttgaaagccaaaaaggtggtttttaggtttggttcagataggtggt 11639584  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||||| ||| ||||| |||| |||| | |||||||||||||| || || |||| |  || | | ||| ||||||| ||| ||| ||| ||||||||    
T  11639583 gttcaagtcccttacaatgcttgggcatcgcgtaatggtttgtttt-ggttggttgtatgactctgtatttgtaaagtagttcttttggcacaccttgtg 11639485  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    | ||| ||||| | ||||||||||||||||| ||||||||||| ||||||    
T  11639484 caagaagagtt-gattttggtggttaatata-attccatttttgattgtt 11639437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 19221842 - 19221599
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| |||||||||||||||||||  |||||||||||| |||||||       ||||||||||||||||||||||| ||||||    
T  19221842 gtaacttctattcccaggttgttagataaagttaaatatat--ctttagcctggtcgaaagccaaaaatgttgtttttaggtttggtacagataggtggt 19221745  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttt-taaagtaattcctttagcataccttgt 207  Q
    | ||||||  ||| |||||||||| |||| |||||||||||| || ||| || |||| |  ||   |||||| ||||||| |   ||| ||| |||||||    
T  19221744 gctcaagttccttccaatgtttgggcatcgcttaatggtttg-ttatggttgtttgtatgactcggtgttttgtaaagtagt---tttggcacaccttgt 19221649  T
Q  208 gctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  19221648 gctagaggag-ttgcttttggttgttaatatatattccattttttattgtt 19221599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 50543935 - 50543697
Alignment:
Q  12 acttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgtt 111  Q
    |||||||| | || |||| |||||||||||||||||||||||||||||||||||||||||       |||| | |||||||||||||||| |||||||||    
T  50543935 acttctatgcccaggttgttagataaagttaaatatatgtctttagcctggttgaaagccaaaaaggttgtgtgtaggtttggtacagataggtggtgtt 50543836  T
Q  112 caagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtct-ttctgtttgtttttaaagtaattcctttagcataccttgtgct 210  Q
    |||||| ||| |||||||||| |||| | ||||||||||||| ||| |||||| ||    |  ||||||||  ||| ||||||||  |  ||||| ||||    
T  50543835 caagtcccttccaatgtttgggcatcgcctaatggtttgtttctggttgcttgactgaattaattgttttt-tagtgattcctttgacgcaccttatgct 50543737  T
Q  211 agaggagtttgcttttggtggttaatatatattccattttt 251  Q
    ||||||| ||||||||| || ||||||||||||||||||||    
T  50543736 agaggag-ttgcttttgatgattaatatatattccattttt 50543697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 8695314 - 8695542
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| ||||||||||||||||||||||||||| |||||||||||||       | || |||||||||||| ||||| ||||||    
T  8695314 gtaacttctattcccaggttgttagataaagttaaatatatgtctttagtctggttgaaagccaaaaaggtggtctttaggtttggttcagataggtggt 8695413  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||||| ||| ||||| |||| |||| | |||||||||||||| || || |||| |  || | | ||| ||||||| ||| | | ||| ||||||||    
T  8695414 gttcaagtcccttacaatgcttgggcatcgcgtaatggtttgtttt-ggttggttgtataactctgtatttgtaaagtagttcttgtggcacaccttgtg 8695512  T
Q  209 ctagaggagtttgcttttggtggttaatata 239  Q
    ||||| ||||| |||||||||||||||||||    
T  8695513 ctagaagagtt-gcttttggtggttaatata 8695542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 9047201 - 9047429
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| ||||||||||||||||||||||||||| |||||||||||||       | || |||||||||||| ||||| ||||||    
T  9047201 gtaacttctattcccaggttgttagataaagttaaatatatgtctttagtctggttgaaagccaaaaaggtggtctttaggtttggttcagataggtggt 9047300  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||||| ||| ||||| |||| |||| | |||||||||||||| || || |||| |  || | | ||| ||||||| ||| | | ||| ||||||||    
T  9047301 gttcaagtcccttacaatgcttgggcatcgcgtaatggtttgtttt-ggttggttgtataactctgtatttgtaaagtagttcttgtggcacaccttgtg 9047399  T
Q  209 ctagaggagtttgcttttggtggttaatata 239  Q
    ||||| ||||| |||||||||||||||||||    
T  9047400 ctagaagagtt-gcttttggtggttaatata 9047429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 33121740 - 33121885
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||| |||||  |||||    
T  33121740 gtaacttctattcccaagttgttagataaagttaaatatatgtctttagcctggttgaaagtcaataagattgtttttaggtttggttcagatatgtggt 33121839  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttt 154  Q
    ||| ||||| ||| ||||| |||| |||||| ||||||||||||||    
T  33121840 gtttaagtcccttacaatgcttgggcatcacgtaatggtttgtttt 33121885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 47536985 - 47536740
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||| ||||| ||||||    
T  47536985 gtaacttctattcccaggttgttagataaagttaaatatatgtctttagcctggttgaaaggcaaaaaagttgtttttaggtttggttcagataggtggt 47536886  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    | ||||||| ||| ||||| |||| |||| | ||||| |   ||||||  || |||| |  || | ||||| || ||||  || ||| ||| | ||||||    
T  47536885 gctcaagtcccttccaatgcttgggcatcgcgtaatgct---tttttgtttgtttgtatgactctgtgtttgtagagtagctcttttggcacatcttgtg 47536789  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||| |||||  || ||||||||||||||||| ||||||||||||||||||    
T  47536788 ctacaggag-ctgtttttggtggttaatataaattccattttttattgtt 47536740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 32093340 - 32093582
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||| ||||| ||||||    
T  32093340 gtaacttctattcccaggttgttagataaagttaaatatatgtctttagcctggttgaaagccaaaaa---tgtttttaggtttggttcagataggtggt 32093436  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    | ||||||| ||| |||||||||| |||||| | ||| |   ||||||  ||||| | |  || | ||||| || ||||  || ||| |||  ||||||     
T  32093437 gctcaagtcccttccaatgtttgggcatcacgtgatgat---tttttgtttgcttttatgactctgtgtttgtagagtagctcttttggcacgccttgta 32093533  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||| |||||  ||||||||||||||||||||||| |||||||| ||||||    
T  32093534 ctataggag-ctgcttttggtggttaatatatatcccatttttgattgtt 32093582  T

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Target: chr3; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 36635155 - 36635010
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| || | ||||||||||||||||||||||||||||||||| ||       ||||||||||||||| | | |||| |||||    
T  36635155 gtaacttctattcccaggttgttaaacaaagttaaatatatgtctttagcctggttgaaaaccaataaagttgtttttaggtttgcttctgatgtgtggt 36635056  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttt 154  Q
    ||||||||| |||  ||||||||  |||||| ||||||||||||||    
T  36635055 gttcaagtcccttataatgtttgagcatcacgtaatggtttgtttt 36635010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 32233676 - 32233749
Alignment:
Q  184 agtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    |||| ||| ||| ||| ||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||    
T  32233676 agtagttcttttggcacaccttgtgctagaggagtt-gcttttggtggttaatataaatttcattttttattgtt 32233749  T

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Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 46665180 - 46665053
Alignment:
Q  26 gttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgttcaagtctc-tttca 124  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||        ||  ||||||||||| || ||| |||||||||| || ||| |||||    
T  46665180 gttgttagataaagtgaaatatatgtctttagcctggatgaaagccaagaaggctgcctttaggtttggcaccgataggtggtgttcgag-ctcgtttca 46665082  T
Q  125 atgtttggacatcacttaatggtttgttt 153  Q
    ||| |||| |||||| |||||||||||||    
T  46665081 atgcttgggcatcacataatggtttgttt 46665053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 49500930 - 49500996
Alignment:
Q  184 agtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttt 251  Q
    |||||||| ||| ||| | ||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  49500930 agtaattcttttggcacatcttgtgctagaggagtt-gctttttgtggttaatatatattccattttt 49500996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 46909114 - 46909228
Alignment:
Q  33 gataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgttcaagtctctttcaatgtttgg 132  Q
    |||||||||||||||||||||||||||||| ||||||||       |   |||||||||||||| |||| |||||||||  ||||  |||||||| ||||    
T  46909114 gataaagttaaatatatgtctttagcctggatgaaagccaaaaatgtaaattttaggtttggtagagataggtggtgtttgagtccttttcaatgcttgg 46909213  T
Q  133 acatcacttaatggt 147  Q
      ||||| |||||||    
T  46909214 gtatcacctaatggt 46909228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 43122275 - 43122341
Alignment:
Q  184 agtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttt 251  Q
    |||||||| ||| ||| | ||| ||||||||||||| |||||| ||||||||||||||||||||||||    
T  43122275 agtaattcttttggcacatcttatgctagaggagtt-gctttttgtggttaatatatattccattttt 43122341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 46665021 - 46664955
Alignment:
Q  184 agtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttt 251  Q
    |||||||| ||| ||| | |||||||||||||||||  ||||| ||||||||||||||||| ||||||    
T  46665021 agtaattcttttggcacatcttgtgctagaggagtta-ctttttgtggttaatatatattctattttt 46664955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 4076992 - 4076744
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||  |||||    
T  4076992 gtaacttctattcccaggttgctaaataaagttaaatatatgtctttagcctggttgaaagctaaaaaggttgtttttaggtttggtacagataagtggt 4076893  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||  || ||||||||||||||||||| ||| ||| ||||||||    
T  4076892 gttcaagtccctttcaatgtttgggcatcacttaatggtttgtttt-ggatgcttgtctgactctttgtttttaaagtaattcttttggcacaccttgtg 4076794  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  4076793 ctagaggagtttgcttttggtgattattatatattccattttttattgtt 4076744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 9 - 243
Target Start/End: Complemental strand, 28060295 - 28060062
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||| |       |||||||||||||| ||||| || ||||||    
T  28060295 gtaacttctattcccaggttgttagataaagttaaatatatgtctttagcctggttgaaagtcaaaaatgttgtttttaggtttagtacatataggtggt 28060196  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||||| ||||||||| |||| |||| |||||| ||| |||| ||  ||||||| |  ||  ||||||||||||||| || |||  || ||||| ||    
T  28060195 gttcaagtccctttcaatgcttgggcatcgcttaatagttggtttctgattgcttgtatgactcattgtttttaaagtaactcatttgacacaccttatg 28060096  T
Q  209 ctagaggagtttgcttttggtggttaatatatatt 243  Q
    ||||||||| |||||||||||| ||||||||||||    
T  28060095 ctagaggag-ttgcttttggtgtttaatatatatt 28060062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 79 - 258
Target Start/End: Original strand, 18654325 - 18654503
Alignment:
Q  79 ttgtttttaggtttggtacagatgggtggtgttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtt 178  Q
    |||||||||||||||||||| ||  |||||| ||||||| |||||||||||| | |||| |||||||||||| |||||| || |||| |  || | ||||    
T  18654325 ttgtttttaggtttggtacatatatgtggtgctcaagtccctttcaatgtttaggcatcgcttaatggtttggttttggttgtttgtatgactctgtgtt 18654424  T
Q  179 tttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    | ||||||| ||| ||| ||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  18654425 tgtaaagtagttcttttggcacaccttgtgctagaggag-ttgcttttggtggttaatttatattccattttttattgtt 18654503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 34231416 - 34231271
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    |||||||| |||| || |||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||  |||||    
T  34231416 gtaacttcaattcccaggttgttagataaagttaaatatatgtctttagcctggttgaaagccaataaggttgtttttaggtttggttcagatatgtggt 34231317  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttt 154  Q
    ||||||||| ||| ||||| |||| |||||| ||||||||||||||    
T  34231316 gttcaagtcccttacaatgcttgggcatcacataatggtttgtttt 34231271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 7459094 - 7459333
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| ||||||||||||||||| ||||||||||||||||||||||         |||||||||||||||||||||| ||||||    
T  7459094 gtaacttctattcccaggttgttagataaagttaaatatttgtctttagcctggttgaaagcaaaaaaagctgtttttaggtttggtacagataggtggt 7459193  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    | |||| || ||| || || |||| |||  |||||||||||| |||||| || |||| |  || | | | ||  ||||||||| ||| ||| ||||||||    
T  7459194 gctcaattcccttccattgcttgggcattgcttaatggtttg-ttttggttgtttgtatggctctgt-tcttgtaagtaattcttttggcacaccttgtg 7459291  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttt 251  Q
    |||| |||| |||||||||||| ||||||||||||||||||||    
T  7459292 ctaggggag-ttgcttttggtgtttaatatatattccattttt 7459333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 29113972 - 29114218
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    |||||||| |||| || |||| |||||||||| ||||||||||||||||||||||||||||||       |||||||||| |||||| |||||  |||||    
T  29113972 gtaacttcaattcccaggttgttagataaagtcaaatatatgtctttagcctggttgaaagccaagaaggttgtttttagttttggttcagatatgtggt 29114071  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||||| ||| ||||| |||| |||||| ||||| |||| || ||| || |||| |  || |   |||||| ||||  || ||| ||| ||||||||    
T  29114072 gttcaagtcccttacaatgcttgggcatcacgtaatgatttg-ttatggttgtttgtatgactctaaatttttagagtagctcttttggcacaccttgtg 29114170  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    |||||  || |||||||||||| |||||||| ||||||||||| ||||||    
T  29114171 ctagaatag-ttgcttttggtgattaatata-attccatttttgattgtt 29114218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 258
Target Start/End: Complemental strand, 46177902 - 46177725
Alignment:
Q  79 ttgtttttaggtttggtacagatgggtggtgttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctt---tctgttt 175  Q
    ||||||||||||||||||||||| ||||||| |||||||  || |||||||||| |||| ||||||| |||| |  ||| || |||| ||   ||||||     
T  46177902 ttgtttttaggtttggtacagataggtggtgctcaagtcctttccaatgtttgggcatcgcttaatgatttg-tagtggttgtttgttttgactctgtt- 46177805  T
Q  176 gtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
     ||| ||||||||||| ||||||| ||||| | ||||||||| ||| ||||||| | ||||||||||||||||||| ||||||    
T  46177804 -tttgtaaagtaattcttttagcacaccttatactagaggag-ttgtttttggt-gctaatatatattccatttttgattgtt 46177725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 20037588 - 20037670
Alignment:
Q  175 tgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||| ||||||| ||| ||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  20037588 tgtttgtaaagtagttcttttggcacaccttatgctagaggagtt-gcttttggtggttaatatatattccatttttgattgtt 20037670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 20047719 - 20047801
Alignment:
Q  175 tgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||| |||| || ||| ||| ||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20047719 tgtttgtaaaatagttcttttggcacaccttgtactagaggagtt-gcttttggtggttaatatatattccattttttattgtt 20047801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 10282260 - 10282387
Alignment:
Q  26 gttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgttcaagtctctttcaa 125  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||        ||  ||||||||||| |||||| |||||||||| || |  ||||||    
T  10282260 gttgttagataaagtgaaatatatgtctttagcctggatgaaagccaaaaaggctgcctttaggtttggcacagataggtggtgttcgagcccgtttcaa 10282359  T
Q  126 tgtttggacatcacttaatggtttgttt 153  Q
    || |||| |||||| |||||||||||||    
T  10282360 tgcttgggcatcacataatggtttgttt 10282387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 23397268 - 23397331
Alignment:
Q  193 tttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||    
T  23397268 tttagcacaccttgtgctagaggagttt-cttttggt-gttaatatatattccatttttgattgtt 23397331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 153
Target Start/End: Original strand, 44785062 - 44785119
Alignment:
Q  96 acagatgggtggtgttcaagtctctttcaatgtttggacatcacttaatggtttgttt 153  Q
    |||||| |||||||||||||||  |||||||| || | ||||||||||||||||||||    
T  44785062 acagataggtggtgttcaagtccgtttcaatgcttaggcatcacttaatggtttgttt 44785119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 10282419 - 10282485
Alignment:
Q  184 agtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttt 251  Q
    |||||||| ||| ||| |  |||||||||||||||| | |||| ||||||||||||||||||||||||    
T  10282419 agtaattcttttggcacattttgtgctagaggagtt-gttttttgtggttaatatatattccattttt 10282485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 9036353 - 9036298
Alignment:
Q  201 accttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||| ||||||||||||||  |||||||||||||||||||||  |||||| ||||||    
T  9036353 accttatgctagaggagttt--ttttggtggttaatatatattttatttttgattgtt 9036298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 18935385 - 18935136
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| |||||||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||||||| | ||||    
T  18935385 gtaacttctattcccaggttgttagataaagttaaatataagtctttagcctggttgaaagccaaaaatgttgtttttaggtttggtacagatagttggt 18935286  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||  |||||||||||||||||||||| ||| ||| ||||||||    
T  18935285 gttcaagtccctttcaatgtttgggcatcacttaatggtttgtttttggatacttgtctgactgtttgtttttaaagtaattcatttggcacaccttgtg 18935186  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    |||| ||||||||||||||| |||||||||||||| ||||||| ||||||    
T  18935185 ctagtggagtttgcttttggcggttaatatatatttcatttttaattgtt 18935136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 18106979 - 18107225
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||  |||||    
T  18106979 gtaacttctattcccaagttgttagataaagttaaatatatgtctttagcctggttgaaagccaataaggttgtttttaggtttggttcagatatgtggt 18107078  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||||| ||| ||||| |||| |||||| |||||||||| |||||| || |||| |  || |   ||| || |||| ||| ||| ||| ||||||||    
T  18107079 gttcaagtcccttacaatgcttgggcatcacgtaatggtttg-ttttggttgtttgtatgactctaaatttgtagagtagttcttttggcacaccttgtg 18107177  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    | ||| ||| |||||||||||| |||||||| ||||||||||||||||||    
T  18107178 ccagaagag-ttgcttttggtgattaatata-attccattttttattgtt 18107225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 12881108 - 12881355
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| ||||| ||||||    
T  12881108 gtaacttctattcccaggttgttagataaagttaaatatatgtctttagcctggttgaaagccaaaaaagttgtttttaggtttggttcagataggtggt 12881207  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    | ||||||| ||| ||||| |||| |||| | ||||||||| ||| ||  || |||| |  || | ||||| || ||||  || ||| | | ||||||||    
T  12881208 gctcaagtcccttccaatgcttgggcatcgcgtaatggttt-tttatgtttgtttgtatgactctgtgtttgtagagtagctcttttggtacaccttgtg 12881306  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||||||| ||||||||||||||||||||| |||||||| || ||||||    
T  12881307 ctagaggag-ttgcttttggtggttaatataaattccattgttgattgtt 12881355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 53487379 - 53487622
Alignment:
Q  12 acttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgtt 111  Q
    |||||||||| || |||| |||||||||||||||||||||||||||||||||| ||||||       ||||||||||||||||| |||||  ||||||||    
T  53487379 acttctattcccaggttgttagataaagttaaatatatgtctttagcctggttaaaagccaataaggttgtttttaggtttggttcagatatgtggtgtt 53487478  T
Q  112 caagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtgcta 211  Q
    |||||| ||| |||| ||||| |||||| |||||||||||||| || || |||| |  || | ||||| || |||||||| ||| ||| | |||||||||    
T  53487479 caagtcccttacaatatttgggcatcacgtaatggtttgtttt-ggttgtttgtatgactctatgtttgtagagtaattcttttggcacatcttgtgcta 53487577  T
Q  212 gaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    || ||| |||||||| ||| || ||||| ||||||||| ||||||||    
T  53487578 gaagag-ttgctttttgtgatttatata-attccatttcttattgtt 53487622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 53779762 - 53779514
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| ||||||||||||||||| |||||||||||||||||||||||       ||||||||||||||||||||||| ||||||    
T  53779762 gtaacttctattcccaggttgttagataaagttaaatatttgtctttagcctggttgaaagccaaaaaagttgtttttaggtttggtacagataggtggt 53779663  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    | | ||||| | | ||||| |||| |||  |||||||||||| |||||| || |||| |  || | |  || ||||||||||| ||| ||| ||||||||    
T  53779662 gctaaagtcccatccaatgcttgggcattgcttaatggtttg-ttttggttgtttgtatgactatgttcttgtaaagtaattcttttggcacaccttgtg 53779564  T
Q  209 ctagaggagtttgcttttggtg-gttaatatatattccattttttattgtt 258  Q
    ||||  ||| ||||||||||||  |||||||||||| ||||||||||||||    
T  53779563 ctaggagag-ttgcttttggtgttttaatatatatttcattttttattgtt 53779514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 30274235 - 30274380
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| ||  ||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||  |||||    
T  30274235 gtaacttctattcccagattgttagataaagttaaatatatgtctttagcctggttgaaagccaataaggttgtttttaggtttggttcagatatgtggt 30274334  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttt 154  Q
    ||||||||| ||| ||||| |||| |||||| ||||||||||||||    
T  30274335 gttcaagtcccttacaatgcttgggcatcacgtaatggtttgtttt 30274380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 42823161 - 42823016
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||  || ||    
T  42823161 gtaacttctattctcaggttgttagataaagttaaatatatgtctttagcctggttgaaagccaataagattgtttttaggtttggttcagatatgtagt 42823062  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttt 154  Q
    |||||| || ||| ||||| |||| |||||| ||||||||||||||    
T  42823061 gttcaaatcccttacaatgcttgggcatcacgtaatggtttgtttt 42823016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 31863983 - 31863744
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||  |||||||||||||||||||||||||||||||||||||||||       | || |||| ||||||| ||||| | ||||    
T  31863983 gtaacttctattcccaggttattagataaagttaaatatatgtctttagcctggttgaaagccaaaaaggtggtctttaagtttggttcagatagttggt 31863884  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||||| ||| ||||| |||| |||| | |||||||||| |||||| || |||| |  || | | ||| ||||||| ||| | | ||| ||||||||    
T  31863883 gttcaagtcccttacaatgcttgggcatcgcgtaatggtttg-ttttggttggttgtataactctgtatttgtaaagtagttcttgtggcacaccttgtg 31863785  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttt 251  Q
    ||||| ||| ||||||||||||||||||||| |||||||||||    
T  31863784 ctagaagag-ttgcttttggtggttaatata-attccattttt 31863744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 10563732 - 10563978
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| ||||||||||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||| | ||||    
T  10563732 gtaacttctattcccaggttgttagataaagttaaatatttgtctttagcctggttgaaagcaaaaaaagttgtttttaggtttggtacagatagttggt 10563831  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    | ||||||| ||| ||||  |||| |||  |||||||||||| |||||| || |||| |  || | | | ||  ||||||||| | | ||| ||||| ||    
T  10563832 gctcaagtcccttccaatacttgggcattgcttaatggtttg-ttttggttgtttgtatgactctgt-tcttgtaagtaattcttctggcacaccttatg 10563929  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    |||| |||| |||||||||||| |||||||||||||||||||| ||||||    
T  10563930 ctaggggag-ttgcttttggtgtttaatatatattccatttttgattgtt 10563978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 449768 - 449623
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| ||  ||| ||||||||||||||||||| |||||||||||||||||||||       || |||||||||||||| |||||  |||||    
T  449768 gtaacttctattcccagtttgttagataaagttaaatatatatctttagcctggttgaaagccaataaggttatttttaggtttggttcagatatgtggt 449669  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttt 154  Q
    ||||||||| ||| ||||| |||| |||||| ||||||||||||||    
T  449668 gttcaagtcccttacaatgcttgggcatcacgtaatggtttgtttt 449623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 34322742 - 34322887
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    |||||||||||||  | |||| ||||||||||||||||||||||||||| |||||||||||||       ||||||||||||||||| |||||  |||||    
T  34322742 gtaacttctattcctaggttgttagataaagttaaatatatgtctttaggctggttgaaagccaataaggttgtttttaggtttggttcagatatgtggt 34322841  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttt 154  Q
     |||||||| ||| ||||| |||| |||||| ||||||||||||||    
T  34322842 attcaagtcccttacaatgcttgggcatcacgtaatggtttgtttt 34322887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 20395313 - 20395185
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| ||  ||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| ||||| ||||||    
T  20395313 gtaacttctattcccagattgttagataaagttaaatatatgtctttagcctggttgaaagccaaaaatgttgtttttaggtttggttcagataggtggt 20395214  T
Q  109 gttcaagtctctttcaatgtttggacatc 137  Q
    | ||||||| ||| ||||| |||||||||    
T  20395213 gctcaagtcccttccaatgcttggacatc 20395185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 42777955 - 42777717
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| |||| ||||| ||||||||||||||||||||||||||||||       ||||||||||||||||| | ||   |||||    
T  42777955 gtaacttctattcccaggttgttagacaaagtcaaatatatgtctttagcctggttgaaagccaataaggttgtttttaggtttggttctgagatgtggt 42777856  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    | ||||||| ||| |||||||||| |||||| ||||||||||  |||||  | |||| |  || ||| ||| || |||| ||| ||| ||| ||||||||    
T  42777855 gctcaagtcccttacaatgtttgggcatcacgtaatggtttg--tttggtggtttgtatgactctttatttgtagagtagttcttttggcacaccttgtg 42777758  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttt 251  Q
    ||||| ||| |||||||||||| ||| |||| |||||||||||    
T  42777757 ctagaagag-ttgcttttggtgattattata-attccattttt 42777717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 43 - 258
Target Start/End: Original strand, 52741295 - 52741506
Alignment:
Q  43 aatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgttcaagtctctttcaatgtttggacatcactta 142  Q
    ||||||||||||||| |||||||||||||       ||||||||||||||||| | ||   |||||| ||||||||||| |||||||||| |||||||||    
T  52741295 aatatatgtctttaggctggttgaaagccaataaggttgtttttaggtttggttctgagatgtggtgctcaagtctcttacaatgtttgggcatcactta 52741394  T
Q  143 atggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatat 242  Q
    |||||||||||  || || |||| |  || ||| ||| || |||| ||| ||| ||| ||||||||||||| ||||| |||||||||| |||||||| ||    
T  52741395 atggtttgttt--ggttgtttgtatgactctttatttatagagtagttcttttggcacaccttgtgctagaagagtt-gcttttggtgattaatata-at 52741490  T
Q  243 tccattttttattgtt 258  Q
    | ||||||| ||||||    
T  52741491 ttcatttttgattgtt 52741506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 29213404 - 29213651
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| ||||||||||||||||| |||||||||||| ||||||||||       ||| ||||||||||||||||||| ||||||    
T  29213404 gtaacttctattcccaggttgttagataaagttaaatatttgtctttagcctagttgaaagccaaaaaagttg-ttttaggtttggtacagataggtggt 29213502  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    | ||||||| ||| ||||| |||  |||  |||||||||||| |||||| || |||| |  || | |  || ||||||||||  ||| ||| ||||| |     
T  29213503 gctcaagtcccttccaatgcttgagcattgcttaatggtttg-ttttggttgtttgtatgactctcttcttgtaaagtaattattttggcacaccttata 29213601  T
Q  209 ctagaggagtttgcttttggtg-gttaatatatattccattttttattgtt 258  Q
    ||||  ||| ||||||||||||  |||||||||||||||||||| ||||||    
T  29213602 ctaggagag-ttgcttttggtgttttaatatatattccatttttgattgtt 29213651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 258
Target Start/End: Original strand, 1844750 - 1844928
Alignment:
Q  79 ttgtttttaggtttggtacagatgggtggtgttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtt 178  Q
    ||||||||||||||||| ||||| ||||||| ||||||| ||| ||||||||| ||||| | ||||||||| ||| ||  || |||| |  || | ||||    
T  1844750 ttgtttttaggtttggttcagataggtggtgctcaagtcccttccaatgtttgaacatcgcgtaatggtttttttatgtttgtttgtatgactctgtgtt 1844849  T
Q  179 tttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    | || ||||  || ||| ||| ||||||||||||||||| ||| ||||| ||||||||||| ||||||||||||||||||    
T  1844850 tgtagagtagctcttttggcacaccttgtgctagaggag-ttgtttttgatggttaatataaattccattttttattgtt 1844928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 55854470 - 55854366
Alignment:
Q  50 gtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgttcaagtctctttcaatgtttggacatcacttaatggttt 149  Q
    ||||||||||||||||||||||       ||||||||||||||||| |||||  |||||||||||||| ||| ||||| |||  |||||| |||||||||    
T  55854470 gtctttagcctggttgaaagccaataaggttgtttttaggtttggttcagatatgtggtgttcaagtcccttacaatgcttgagcatcacgtaatggttt 55854371  T
Q  150 gtttt 154  Q
    |||||    
T  55854370 gtttt 55854366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 19164538 - 19164457
Alignment:
Q  175 tgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||| || |||| ||| ||| ||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||    
T  19164538 tgtttgtagagtagttcttttggcacaccttgtgctagaagagtt-gcttttggtggttaatata-attccatttttgattgtt 19164457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 251
Target Start/End: Complemental strand, 34005536 - 34005372
Alignment:
Q  84 tttaggtttggtacagatgggtggtgttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaa 183  Q
    |||||||||||| |||||  |||||||||||||| ||| ||||| |||  |||| | |||||||||| |||||| || |||| |  || | | ||| |||    
T  34005536 tttaggtttggttcagataagtggtgttcaagtcccttacaatgcttgagcatcgcgtaatggtttg-ttttggttggttgtataactctgtatttgtaa 34005438  T
Q  184 agtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttt 251  Q
    |||| ||| | | ||| ||||| | ||||| ||| ||||||||||||||||||||| |||||||||||    
T  34005437 agtagttcttatggcacaccttatactagaagag-ttgcttttggtggttaatata-attccattttt 34005372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 7e-65; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 268 - 401
Target Start/End: Complemental strand, 1350515 - 1350382
Alignment:
Q  268 ttatatagccaattaggctaactaatttaactaatatgaaactagcttttacatctttaatattttatcacacgaattgcgcttaagaaataatgttgat 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  1350515 ttatatagccaattaggctaactaatttaactaatatgaaactagcttttacatctttaatattttatcatacgaattgcgcttaagaaacaatgttgat 1350416  T
Q  368 aaaatgtcactggattaaagctttgtatcagtcc 401  Q
    ||||||||||||||||||||||||||||||||||    
T  1350415 aaaatgtcactggattaaagctttgtatcagtcc 1350382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 47587039 - 47586798
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||  || |||| ||||||| |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| ||||||    
T  47587039 gtaacttctatttccatgttgttagataacgttaaatatatgtctttagcctggttgaaagccaaaaagattgtttttaggtttggtacagataggtggt 47586940  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    |||||| || ||| ||||| |||| |||| ||||||||||||||| ||| |||||| |   ||  |||||||||||||||||| ||| ||| ||||||||    
T  47586939 gttcaa-tcccttccaatgcttgggcatcgcttaatggtttgtttatgggtgcttgaccgactcattgtttttaaagtaattcatttggcacaccttgtg 47586841  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttt 251  Q
     ||||||||||||||||||||||||||||||||||||||||||    
T  47586840 ttagaggagtttgcttttggtggttaatatatattccattttt 47586798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 49969044 - 49968797
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| ||||| ||||||    
T  49969044 gtaacttctattcccaacttgttagataaagttaaatatatgtctttagcctggttgaaagccaaaaatgttgtttttaggtttggttcagataggtggt 49968945  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    | ||||||| ||| ||||| |||| |||| | |||||||||  || ||| || |||| |  || | ||||| |||||||  || ||||||| ||||||||    
T  49968944 gctcaagtcccttccaatgcttgggcatcgcgtaatggttt-cttatggttgtttgtatgactctgtgtttgtaaagtagctcttttagcacaccttgtg 49968846  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    |||||| || ||||||||||||||||||||| ||||||||||| ||||||    
T  49968845 ctagagaag-ttgcttttggtggttaatataaattccatttttgattgtt 49968797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 41061570 - 41061814
Alignment:
Q  12 acttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgtt 111  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||| || ||||||||||||       ||||||||||||||||||||||| ||||||| |    
T  41061570 acttctattctcaggttgttagataaagttaaatttatgtcttttgcatggttgaaagccaaaaatgttgtttttaggtttggtacagataggtggtgct 41061669  T
Q  112 caagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctt-tctgtttgtttttaaagtaattcctttagcataccttgtgct 210  Q
    ||||||  || ||||| |||| |||| |||||||||||| | |||| || |||| ||  || | | ||| || |||||||| ||||||| ||||||||||    
T  41061670 caagtcctttccaatgcttgggcatcgcttaatggtttg-tattggttgtttgttttgactatgtttttgtagagtaattcttttagcacaccttgtgct 41061768  T
Q  211 agaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||| ||| ||||||||||| ||||||||||||||||||||| ||||||    
T  41061769 agaagag-ttgcttttggt-gttaatatatattccatttttgattgtt 41061814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 25591897 - 25592136
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||       | || |||||||||||| ||||| ||||||    
T  25591897 gtaacttctattctcaggttgctagataaagttaaatatatatctttagcctggttgaaagccaaaaaggtggtctttaggtttggttcagataggtggt 25591996  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||||| ||| |||||||||| |||| | | || ||||| |||||| || |||| |  || | | ||| ||||||| ||| | | ||| ||||||||    
T  25591997 gttcaagtcccttacaatgtttgggcatcgcgtgatagtttg-ttttggttggttgtataactctgtatttgtaaagtagttcttgtggcacaccttgtg 25592095  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttt 251  Q
    ||||| ||| ||||||||||||||||||||| |||||||||||    
T  25592096 ctagaagag-ttgcttttggtggttaatata-attccattttt 25592136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 9903688 - 9903934
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||| |||||  |||||    
T  9903688 gtaacttctattcccaagttgttagataaagttaaatatatgtctttagcctggttgaaagtcaaaaatgttgtttttaggtttggttcagataagtggt 9903787  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    | ||||||| ||| ||||  |||| |||| | |||||||||| |||||| || |||| |  || | ||||| || |||| ||| ||||||| |||||||     
T  9903788 gctcaagtcccttacaatacttgggcatcgcgtaatggtttg-ttttggttgtttgtatgactctgtgtttgtagagtagttcttttagcacaccttgta 9903886  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||| ||| ||||||||||||||||| ||| ||||||||||| ||||||    
T  9903887 ctagaagag-ttgcttttggtggttaacata-attccatttttgattgtt 9903934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 17707713 - 17707485
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||   | |||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||  ||| |    
T  17707713 gtaacttctatttctaggttgttagataaagttaaatatatgtctttagcctggttgaaagccaataaggttgtttttaggtttggttcagatatgtgtt 17707614  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||||||||| ||||| |||| |||||| |||||||||| |||||| || |||| |  || |  |||| || ||||  || ||||||| ||||||||    
T  17707613 gttcaagtctcttacaatgcttgggcatcacgtaatggtttg-ttttggttgtttgtatgactctaagtttgtagagtagctcttttagcacaccttgtg 17707515  T
Q  209 ctagaggagtttgcttttggtggttaatata 239  Q
    ||||| ||| |||||| ||||| ||||||||    
T  17707514 ctagaagag-ttgcttgtggtgattaatata 17707485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 41181927 - 41181787
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| ||||| | ||||    
T  41181927 gtaacttctattcccaggttgttagataaagttaaatatatgtctttagcctggttgaaagccaaaaaggttgtttttaggtttggttcagatagatggt 41181828  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggttt 149  Q
    | ||||| | ||| |||| ||||| |||||| | |||||||    
T  41181827 gctcaagccccttccaatatttgggcatcacgtgatggttt 41181787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 30111347 - 30111593
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||| | || |||| |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||  ||||  |||||    
T  30111347 gtaacttctatccccaggttgttagataaagttaaatatatgtctttagcctggttgaaagccaaaaaggttgtttttaggtttggtttagatatgtggt 30111446  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    |||||| || ||| ||||||||||  |||   ||||||||||  ||| | || |||| |  || | || || ||||||| ||| ||| ||| ||||||||    
T  30111447 gttcaaatcccttacaatgtttgggtatcgtgtaatggtttg-ctttagttgtttgtatgactctatggttgtaaagtagttcttttggcacaccttgtg 30111545  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||| ||| ||| ||||| || |||||||| ||||||||||| ||||||    
T  30111546 ctagaagag-ttgtttttgatgattaatata-attccatttttgattgtt 30111593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 47107107 - 47107248
Alignment:
Q  13 cttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgttc 112  Q
    ||||||||| || |||| | |||||| ||||||||||||||||||||||| ||||||||       |||||||||| ||||||||||||  |||||| ||    
T  47107107 cttctattcccaggttgtttgataaaattaaatatatgtctttagcctggctgaaagccaaaaaggttgtttttagatttggtacagatatgtggtgctc 47107206  T
Q  113 aagtctctttcaatgtttggacatcacttaatggtttgtttt 154  Q
    | ||| ||||||||| |||| |||| ||||||||||||||||    
T  47107207 acgtccctttcaatgcttgggcatcgcttaatggtttgtttt 47107248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 10711536 - 10711680
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||   | |||| ||||||| |||||||||||||||||||||||||||||||||       | ||||||||||||||| ||||| ||||||    
T  10711536 gtaacttctatttctaggttgttagataaggttaaatatatgtctttagcctggttgaaagccaaaaaggtggtttttaggtttggttcagataggtggt 10711635  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgttt 153  Q
    ||||||||| ||| ||||| ||||  ||| | |||||||||||||    
T  10711636 gttcaagtcccttacaatgcttgggtatcgcgtaatggtttgttt 10711680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 43 - 258
Target Start/End: Original strand, 40292542 - 40292753
Alignment:
Q  43 aatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgttcaagtctctttcaatgtttggacatcactta 142  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||| | ||   |||||| ||||||  ||| |||||||||| |||||| ||    
T  40292542 aatatatgtctttagcctggttgaaagccaataaggttgtttttaggtttggttctgagatgtggtgctcaagttccttacaatgtttgggcatcacgta 40292641  T
Q  143 atggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatat 242  Q
    |||||||||||  || || |||| |  || ||| ||| || |||| ||| ||| ||| ||||||||||||| ||||| |||||||||| |||||||| ||    
T  40292642 atggtttgttt--ggttgtttgtttgactctttatttgtagagtagttcttttggcacaccttgtgctagaagagtt-gcttttggtgattaatata-at 40292737  T
Q  243 tccattttttattgtt 258  Q
    ||||||||| ||||||    
T  40292738 tccatttttgattgtt 40292753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 45 - 251
Target Start/End: Complemental strand, 10722718 - 10722517
Alignment:
Q  45 tatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgttcaagtctctttcaatgtttggacatcacttaat 144  Q
    ||||||||||| ||||||||||||||        | ||||||| ||||||| ||||| ||||||||||||||| ||| ||||| |||| |||| | ||||    
T  10722718 tatatgtcttttgcctggttgaaagctaaaaaggtggtttttaagtttggttcagataggtggtgttcaagtcccttacaatgcttgggcatcgcgtaat 10722619  T
Q  145 ggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattc 244  Q
    |||||| |||||| || |||| |  |||  | ||| ||||||| ||| ||| ||| ||||||||||||| ||| ||||||||||||||||||||| ||||    
T  10722618 ggtttg-ttttggttgtttgtatgactg--tatttgtaaagtagttcttttggcacaccttgtgctagaagag-ttgcttttggtggttaatata-attc 10722524  T
Q  245 cattttt 251  Q
    |||||||    
T  10722523 cattttt 10722517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 21335653 - 21335789
Alignment:
Q  17 tattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgttcaagt 116  Q
    ||||| || ||||||||||||| | |||||||||||||||||||||||||||| |        ||  |||| |||||| ||| ||  |||||||||||||    
T  21335653 tattcccaggttgctagataaactgaaatatatgtctttagcctggttgaaaggcaaaaaggatgcctttatgtttggcacatatatgtggtgttcaagt 21335752  T
Q  117 ctctttcaatgtttggacatcacttaatggtttgttt 153  Q
    |  |||||||| |||| ||||||||||||||||||||    
T  21335753 ccgtttcaatgcttgggcatcacttaatggtttgttt 21335789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 12173918 - 12173683
Alignment:
Q  16 ctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgttcaag 115  Q
    |||||| || |||| |||||||||| ||||||||||||||||||| | ||||||||       |||  ||||||||||| |||||| |||| ||||||||    
T  12173918 ctattcccaggttgttagataaagtgaaatatatgtctttagcctagatgaaagccaagaaggttgcctttaggtttggcacagataggtgatgttcaag 12173819  T
Q  116 tctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctg----tttgtttttaaagtaattcctttagcataccttgtgcta 211  Q
     |  |||||||  |||| |||||| |||||||||||||   | || |||| |   ||    ||||||  |  |||||||| ||| ||| | |||||||||    
T  12173818 cccgtttcaattgttgggcatcacataatggtttgttt---ggtggttgtgtaattgaaactttgttccttgagtaattcttttggcacatcttgtgcta 12173722  T
Q  212 gaggagtttgcttttggtggttaatatatattccattttt 251  Q
    |||||||| | |||| ||||||||||||||||||||||||    
T  12173721 gaggagtt-gttttttgtggttaatatatattccattttt 12173683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 26720413 - 26720354
Alignment:
Q  12 acttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagcc 71  Q
    |||||||||| || |||| ||||||||||||||| |||||||||||| ||||||||||||    
T  26720413 acttctattcccaggttgttagataaagttaaatttatgtctttagcatggttgaaagcc 26720354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 28098404 - 28098531
Alignment:
Q  26 gttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgttcaagtctctttcaa 125  Q
    ||||||||||||||| |||||| |||||||||||||| ||||| ||       |||  |||| |||||| | ||||  |||||||||| |||  ||||||    
T  28098404 gttgctagataaagtgaaatatttgtctttagcctggatgaaatccaaaaaagttgcctttaagtttggcatagatatgtggtgttcatgtccgtttcaa 28098503  T
Q  126 tgtttggacatcacttaatggtttgttt 153  Q
    || |||  ||||||||||||||||||||    
T  28098504 tgcttgagcatcacttaatggtttgttt 28098531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 47107251 - 47107334
Alignment:
Q  174 ttgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    |||||| || |||| ||| ||| ||| ||||||| ||||||||||| ||||||||| ||||||||||||| ||||||| ||||||    
T  47107251 ttgtttgtagagtagttcttttggcacaccttgtactagaggagtt-gcttttggtagttaatatatatttcatttttgattgtt 47107334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 21344198 - 21344270
Alignment:
Q  26 gttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtaca 98  Q
    |||| |||| ||| |||||| |||||||||||||||||||||||||       ||||||||||||||||||||    
T  21344198 gttgttagagaaaattaaatctatgtctttagcctggttgaaagccaaaaaagttgtttttaggtttggtaca 21344270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 21349063 - 21349135
Alignment:
Q  26 gttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtaca 98  Q
    |||| |||| ||| |||||| |||||||||||||||||||||||||       ||||||||||||||||||||    
T  21349063 gttgttagagaaaattaaatctatgtctttagcctggttgaaagccaaaaaagttgtttttaggtttggtaca 21349135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 41181736 - 41181683
Alignment:
Q  204 ttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    |||||||| ||||| | |||||||||||||||||||||| |||||||||||||||    
T  41181736 ttgtgctataggagct-gcttttggtggttaatatatatcccattttttattgtt 41181683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 10711694 - 10711773
Alignment:
Q  177 tttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||| ||||||| ||| ||| ||| ||||||||||||| ||||| ||||||||||||||||||| ||| ||||||| ||||||    
T  10711694 tttgtaaagtagttcttttggcacaccttgtgctagaagagtt-gcttttggtggttaatata-atttcatttttgattgtt 10711773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 1395048 - 1395103
Alignment:
Q  201 accttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||||||||||| ||||| | ||||||||||||||||| ||||||||||| ||||||    
T  1395048 accttgtgctagaagagtt-gtttttggtggttaatata-attccatttttgattgtt 1395103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 40090056 - 40089807
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| |||||||||| ||||||||||||||||| ||||||||||||       ||| |||||||||||||| |||| ||||||    
T  40090056 gtaacttctattcccaggttgttagataaagtcaaatatatgtctttagcttggttgaaagccaaaaaggttggttttaggtttggtatagataggtggt 40089957  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||||| ||||||||| |||| |||| |||||||| |||||| ||| |||||||||  || | ||||||||||| ||||||||| ||| ||||||||    
T  40089956 gttcaagtccctttcaatgcttgggcatcgcttaatggattgtttatgggtgcttgtctaactttatgtttttaaagcaattcctttggcacaccttgtg 40089857  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||| ||||||    
T  40089856 ctagaggggttcgcttttggtggttaatatatattacatttttgattgtt 40089807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 20209145 - 20209389
Alignment:
Q  12 acttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgtt 111  Q
    ||||||||||||| |||| ||||||||||||||| |||||||||||| ||||||||||||       ||||||||||||||||||||||| ||||||| |    
T  20209145 acttctattctcaggttgttagataaagttaaatttatgtctttagcatggttgaaagccaaaaaggttgtttttaggtttggtacagataggtggtgct 20209244  T
Q  112 caagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctt---tctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||  || ||||| |||| |||| |||||||||||| | |||| || |||| ||   ||||||  ||| ||||||||||| ||||||| ||||||||    
T  20209245 caagtcctttccaatgcttgggcatcgcttaatggtttg-tattggttgtttgttttgactctgtt--tttgtaaagtaattcttttagcacaccttgtg 20209341  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  20209342 ctagaggag-ttgcttttggt-gttaatatatattccatttttgattgtt 20209389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 4922951 - 4922705
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| ||||||||||||||| |||||| ||||| ||||||||||||       ||||||||||||||||||||||| ||||||    
T  4922951 gtaacttctattcccaggttgttagataaagttaaatttatgtccttagcatggttgaaagccaaaagggttgtttttaggtttggtacagataggtggt 4922852  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    | |||||||  || ||||| |||| |||| |||||||||||| | |||| || |||| |  || | | ||| ||||||||||| ||||||| ||||| ||    
T  4922851 gctcaagtcctttccaatgcttgggcatcgcttaatggtttg-tattggttgtttgtttgactctgtttttgtaaagtaattcttttagcacaccttatg 4922753  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  4922752 ctagaggag-ttgcttttggt-gttaatatatattccatttttgattgtt 4922705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 4416123 - 4416369
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||  |||||    
T  4416123 gtaacttctattcccaggttgttagataaagttaaatatatgtctttagcctggttgaaagccaataaggttgtttttaggtttggttcagatatgtggt 4416222  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||||| ||| ||||| |||| |||||| |||||||||| |||||| || |||| |  || |  |||| || ||||  || |||  || ||||||||    
T  4416223 gttcaagtcccttacaatgcttgggcatcacgtaatggtttg-ttttggttgtttgtatgactctaagtttgtagagtagctcttttgacacaccttgtg 4416321  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||| ||| |||||||||||| || ||||| ||||||||||||||||||    
T  4416322 ctagaagag-ttgcttttggtgatttatata-attccattttttattgtt 4416369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 6048940 - 6048707
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| |||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||| ||||  |||||    
T  6048940 gtaacttctattc-caggttgttagataaaattaaatatatgtctttagcctggttgaaagccaaaaaggttgtttttaggtttggtatagatatgtggt 6048842  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||||| |||||||||||||| ||||  ||||||||||||      |||         || | ||||| || |||| ||| ||| ||| ||||| ||    
T  6048841 gttcaagtccctttcaatgtttgggcatcgtttaatggtttgt------atg--------actctgtgtttgtagagtagttcttttggcacaccttatg 6048756  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6048755 ctagaggag-ttgcttttggtggttaatatatattccattttttattgtt 6048707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 34874862 - 34875107
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |       |||||||||||||||||  |||| ||||||    
T  34874862 gtaacttctattctcaagttgttagataaagttaaatatatgtctttagcctggttgaaagtcaaaaaagttgtttttaggtttggtttagataggtggt 34874961  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    | ||||||| ||| ||||| ||||||||| | |||| ||   ||||||  || |||| |  || | ||||| || ||||  || ||| ||| ||||||||    
T  34874962 gctcaagtcccttccaatgcttggacatcgcgtaatagt---tttttgtttgtttgtatgactctgtgtttgtagagtagctcttttggcacaccttgtg 34875058  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||| || ||  |||||||||||||||||||| ||||||||||| ||||||    
T  34875059 ctacagaag-ctgcttttggtggttaatataaattccatttttgattgtt 34875107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 7001188 - 7001432
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||||| |       ||||||||||||||||| ||||| ||||||    
T  7001188 gtaacttctattcccaagttgttagagaaagttaaatatatgtctttagcctgattgaaagtcaaaaaggttgtttttaggtttggttcagataggtggt 7001287  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
      ||||||  ||| ||||| |||| |||| | | ||||||| | ||||  ||  || |||| ||||||    || ||||  || ||| | |  |||| ||    
T  7001288 tctcaagttccttccaatgcttgggcatcgcgtgatggtttttgtttgtttgtatgactttgtgtttg----tagagtagctcttttggtacgccttatg 7001383  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||| |||||  ||||||||||||||||||||||| |||||||||||||||    
T  7001384 ctataggag-ctgcttttggtggttaatatatatcccattttttattgtt 7001432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 153
Target Start/End: Complemental strand, 20591835 - 20591709
Alignment:
Q  27 ttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgttcaagtctctttcaat 126  Q
    |||||||||||||| |||||| |||||||||||||| ||||| ||        ||  |||| |||||| |||||| | |||||||||||||  |||||||    
T  20591835 ttgctagataaagtgaaatatttgtctttagcctggatgaaatccaaaaaggctgcctttaagtttggcacagatagatggtgttcaagtccgtttcaat 20591736  T
Q  127 gtttggacatcacttaatggtttgttt 153  Q
    |||||||||||| |||||| |||||||    
T  20591735 gtttggacatcatttaatgatttgttt 20591709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 8892021 - 8891966
Alignment:
Q  202 ccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    |||||||||| ||||| | |||||||||||||||||||||| |||||||||||||||    
T  8892021 ccttgtgctataggagct-gcttttggtggttaatatatatcccattttttattgtt 8891966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 45256251 - 45256495
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| |||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||  |||||    
T  45256251 gtaacttctattcccaggttgttagataaaattaaatatatgtctttagcctggttgaaagccaaaaatgttgtttttaggtttggtacagatatgtggt 45256350  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    | ||||||| |||||||||||||| |||| |||||||||||| |||||| || |||| |  |  | ||||| | ||||| ||| ||| ||| ||||||||    
T  45256351 gctcaagtc-ctttcaatgtttgggcatcgcttaatggtttg-ttttggttgtttgtatgac--tctgtttgtgaagtagttcttttggcacaccttgtg 45256446  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||||||| ||| ||||||||||||||||||||| |||||| |||||||    
T  45256447 ctagaggag-ttgtttttggtggttaatatatatttcattttctattgtt 45256495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 26031206 - 26030969
Alignment:
Q  12 acttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgtt 111  Q
    |||||||||| || |||| ||||||||||||||| |||||||||||| ||| ||||||||       |||||||||| |||||||||||| ||||||| |    
T  26031206 acttctattcccaggttgttagataaagttaaatttatgtctttagcatggctgaaagccaaaaaggttgtttttagatttggtacagataggtggtgct 26031107  T
Q  112 caagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttt--taaagtaattcctttagcataccttgtgc 209  Q
    ||||||  || ||||| ||||  ||| |||||||||||| | |||| || |||| |||   | ||||||  ||||| ||||| ||||||| |||||||||    
T  26031106 caagtcctttccaatgcttgggtatcgcttaatggtttg-tattggttgtttgt-tttgactctgttttggtaaagcaattcttttagcacaccttgtgc 26031009  T
Q  210 tagaggagtttgcttttggtggttaatatatattccattttt 251  Q
    |||||||| ||||||||||| |||||||||||||||||||||    
T  26031008 tagaggag-ttgcttttggt-gttaatatatattccattttt 26030969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 23679880 - 23679757
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| ||||| ||||||    
T  23679880 gtaacttctattcccaggttgttagataaagttaaatatatgtctttagcctggttgaaagccaaaaaggttgtttttaggtttggttcagataggtggt 23679781  T
Q  109 gttcaagtctctttcaatgtttgg 132  Q
      ||||||| ||| ||||||||||    
T  23679780 actcaagtcccttccaatgtttgg 23679757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 17658548 - 17658310
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagc-cnnnnnnnttgtttttaggtttggtacagatgggtgg 107  Q
    |||||| |||||| || |||| ||||||||||||||||||||||||||||||||||||||||          |||||||||||||||| ||||| |||||    
T  17658548 gtaactcctattcccaggttgttagataaagttaaatatatgtctttagcctggttgaaagcaaaaaaaaactgtttttaggtttggttcagataggtgg 17658449  T
Q  108 tgttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgt 207  Q
    || ||||||| ||| ||||| |||| |||| | | || |||| | ||   |||  || |||| ||||||    |||||||  || ||| ||| |||||||    
T  17658448 tgctcaagtcccttccaatgcttgggcatcgcgtgatagtttttgttcatatgtatgactttgtgtttg----taaagtagctcttttggcacaccttgt 17658353  T
Q  208 gctagaggagtttgcttttggtggttaatatatattccattttt 251  Q
    |||| |||||  ||||||||||||||||||||||||||||||||    
T  17658352 gctacaggag-ctgcttttggtggttaatatatattccattttt 17658310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 10267659 - 10267576
Alignment:
Q  174 ttgtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| ||  |||||||| ||| |||||||||||||||||||||||    
T  10267659 ttgtttttaaagtaattcctttggcacaccttgtgctagaggag-ttatttttggtgattattatatattccattttttattgtt 10267576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 258
Target Start/End: Original strand, 29470691 - 29470866
Alignment:
Q  79 ttgtttttaggtttggtacagatgggtggtgttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtt 178  Q
    ||||||||||||||||| ||||| ||||||||||||||||||| ||||| ||||||||| | | |||||   ||||||   | |||| |  || | ||||    
T  29470691 ttgtttttaggtttggttcagataggtggtgttcaagtctcttccaatgcttggacatcgcgtgatggt---tttttgttcgtttgtatgactctgtgtt 29470787  T
Q  179 tttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    | || ||||  || ||| ||| ||||| ||||| |||||  |||||||||||||||||||||||| ||||||||||||||    
T  29470788 tgtagagtagctcttttggcacaccttatgctacaggag-ctgcttttggtggttaatatatatttcattttttattgtt 29470866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 36156857 - 36156730
Alignment:
Q  26 gttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgttcaagtctctttcaa 125  Q
    ||||||||||||||| |||||| ||||||||| |||| ||||| ||        ||  |||| |||||| |||||| ||||| |||||||||  ||||||    
T  36156857 gttgctagataaagtgaaatatttgtctttagtctggatgaaatccaaaaaggctgcctttaagtttggcacagataggtggcgttcaagtccgtttcaa 36156758  T
Q  126 tgtttggacatcacttaatggtttgttt 153  Q
    || |||||||||||||||||||||||||    
T  36156757 tgcttggacatcacttaatggtttgttt 36156730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 11155218 - 11155091
Alignment:
Q  26 gttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgttcaagtctctttcaa 125  Q
    ||||||||||||||| |||||| |||||||||| ||  ||||| ||        ||  |||| |||||| |||| | |||||||||||||||  ||||||    
T  11155218 gttgctagataaagtgaaatatttgtctttagcttgtatgaaatccaaaaaggctgcctttaagtttggcacaggtaggtggtgttcaagtccgtttcaa 11155119  T
Q  126 tgtttggacatcacttaatggtttgttt 153  Q
    |||||||  |||||||||||||||||||    
T  11155118 tgtttgggtatcacttaatggtttgttt 11155091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 258
Target Start/End: Original strand, 31082242 - 31082277
Alignment:
Q  223 ttttggtggttaatatatattccattttttattgtt 258  Q
    ||||||||||||||||| ||||||||||||||||||    
T  31082242 ttttggtggttaatataaattccattttttattgtt 31082277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 17079614 - 17079860
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||       | ||||||||||||||| |||||  |||||    
T  17079614 gtaacttctattcccaggttgttagataaagttaaatatatgtctttagcctggttgaaagccaaaaaggtggtttttaggtttggttcagataagtggt 17079713  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||||| ||| ||||| |||| |||| | |||||||||||||| || || |||| |  || | | ||| ||||||| ||| ||| ||| ||||||||    
T  17079714 gttcaagtcccttacaatgcttgggcatcgcgtaatggtttgtttt-ggttgtttgtatgactctgtatttgtaaagtagttcttttggcacaccttgtg 17079812  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||| |||||| |||||||||||||||||| ||||||||||| ||||||    
T  17079813 ctagaagagttt-cttttggtggttaatata-attccatttttgattgtt 17079860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 12 - 258
Target Start/End: Complemental strand, 26526245 - 26526001
Alignment:
Q  12 acttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgtt 111  Q
    |||||||||| || |||| ||||||||||||||| |||||||||||| ||||||||||         ||||||||||||||||||||||| | ||||| |    
T  26526245 acttctattcccaggttgttagataaagttaaatttatgtctttagcatggttgaaagttaaaaaggttgtttttaggtttggtacagatagatggtgct 26526146  T
Q  112 caagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtcttt-ctgtttgtttttaaagtaattcctttagcataccttgtgct 210  Q
     || ||  || ||||| ||||||||| ||||||||||||| || || || || | ||  || | | ||| || |||||||| ||||||| ||||||||||    
T  26526145 taaatcatttccaatgcttggacatcgcttaatggtttgtatt-ggttgtttattttgactctatttttgtacagtaattcttttagcacaccttgtgct 26526047  T
Q  211 agaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    |||| |||| |||||||||| |||||||||||||||||||||||||||    
T  26526046 agagaagtt-gcttttggtg-ttaatatatattccattttttattgtt 26526001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 17874227 - 17874471
Alignment:
Q  12 acttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgtt 111  Q
    |||||||||  || |||| ||||||||||||||||| |||||||||||||||||||||||       |||||||||||||||| ||| ||  |||||| |    
T  17874227 acttctatttccaggttgttagataaagttaaatatttgtctttagcctggttgaaagccaaaaaagttgtttttaggtttggcacatataagtggtgct 17874326  T
Q  112 caagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtgcta 211  Q
    |||||| ||| |||||||||| |||  |||||  ||||| |||||| || |||| |  || | |  || ||||||||||| | | ||| | |||||| ||    
T  17874327 caagtcccttccaatgtttggccattgcttaagtgtttg-ttttggttgtttgtatgactctgttcttgtaaagtaattcttctggcacaacttgtgtta 17874425  T
Q  212 gaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    | |||| |||||||||||| |||||||||||||||||||||||||||    
T  17874426 ggggag-ttgcttttggtgtttaatatatattccattttttattgtt 17874471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 9199676 - 9199819
Alignment:
Q  10 taacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtg 109  Q
    |||||||||||| || | || |||| ||||| ||||||||||||||||||||||||||||||       ||||||||||||||||| | ||   ||||||    
T  9199676 taacttctattcccaggctgttagacaaagtgaaatatatgtctttagcctggttgaaagccaataaggttgtttttaggtttggttctgagatgtggtg 9199775  T
Q  110 ttcaagtctctttcaatgtttggacatcacttaatggtttgttt 153  Q
     ||||||| ||| |||||||||| |||||| |||| ||||||||    
T  9199776 ctcaagtcccttacaatgtttgggcatcacgtaattgtttgttt 9199819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 36 - 154
Target Start/End: Complemental strand, 33722743 - 33722625
Alignment:
Q  36 aaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgttcaagtctctttcaatgtttggaca 135  Q
    |||||||||||||||| |||||||||||||||||         |||||||||||||||||||||||  |||||| ||||||||||||||||| |||| ||    
T  33722743 aaagttaaatatatgtttttagcctggttgaaagttaaaaatgttgtttttaggtttggtacagataagtggtgctcaagtctctttcaatgcttgggca 33722644  T
Q  136 tcacttaatggtttgtttt 154  Q
    | |||||| | ||||||||    
T  33722643 ttacttaacgatttgtttt 33722625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 11061279 - 11061407
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    |||||| |||||| || |||| |||||||||||||||||||||| |||||||||||||||||         |||||||| ||||||| ||||| ||||||    
T  11061279 gtaactcctattcccaggttgttagataaagttaaatatatgtccttagcctggttgaaagcaaaaaaagctgtttttaagtttggttcagataggtggt 11061378  T
Q  109 gttcaagtctctttcaatgtttggacatc 137  Q
    | ||||||| ||| ||||| |||| ||||    
T  11061379 gctcaagtcccttccaatgcttgggcatc 11061407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 6831525 - 6831600
Alignment:
Q  181 taaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||||| ||| ||| ||| ||||||||||||| ||| |||||||||||| |||||||| ||||||||||| ||||||    
T  6831525 taaagtagttcttttggcacaccttgtgctagaagag-ttgcttttggtgattaatata-attccatttttgattgtt 6831600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 21251971 - 21252022
Alignment:
Q  201 accttgtgctagaggagtttgcttttggtggttaatatatattccattttttat 254  Q
    ||||||||||||||||||| ||| |||||| |||||||||||||||||||||||    
T  21251971 accttgtgctagaggagtt-gctcttggtg-ttaatatatattccattttttat 21252022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 3000171 - 3000417
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||  |||||    
T  3000171 gtaacttctattcccaagttgttagataaagttaaatatatgtctttagcctggttgaaagccaataaggttgtttttaggtttggttcagatatgtggt 3000270  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||||| ||| ||||| |||| |||||| |||||||||| |||||| || |||| |  || |   ||| || |||| ||| ||| ||| ||||||||    
T  3000271 gttcaagtcccttacaatgcttgggcatcacgtaatggtttg-ttttggttgtttgtatgactctaaatttgtagagtagttcttttggcacaccttgtg 3000369  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    | ||| ||| |||||||||||| |||||||| ||||||||||||||||||    
T  3000370 ccagaagag-ttgcttttggtgattaatata-attccattttttattgtt 3000417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 98 - 258
Target Start/End: Original strand, 18704305 - 18704464
Alignment:
Q  98 agatgggtggtgttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttag 197  Q
    |||| ||||||||||||||| |||||||| ||| | |||| ||||||||||||||||||| |||||||||  || ||||| |||  |||||||| ||| |    
T  18704305 agataggtggtgttcaagtccctttcaatatttaggcatcgcttaatggtttgtttttggttgcttgtctgactctttgtatttgcagtaattcttttgg 18704404  T
Q  198 cataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    || | ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||    
T  18704405 cacatcttgtgctagacgag-ttgcttttgatggttaatatatattccattttttattgtt 18704464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 30273714 - 30273507
Alignment:
Q  12 acttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgtt 111  Q
    ||||||||||||| |||| ||||||||||||||| |||||||||||| |||||||||| |       ||||||||||||||||||||||| ||||||| |    
T  30273714 acttctattctcaggttgttagataaagttaaatgtatgtctttagcatggttgaaagacaaaaaggttgtttttaggtttggtacagataggtggtgct 30273615  T
Q  112 caagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctt---tctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||  || |||||||| | ||||  ||||||||||| | |||| || |||| ||   ||||||  ||| ||||||||||| ||||||| ||||||||    
T  30273614 caagtcctttccaatgtttaggcatcgtttaatggtttg-tattggttgtttgttttgactctgtt--tttgtaaagtaattcttttagcacaccttgtg 30273518  T
Q  209 ctagaggagtt 219  Q
    |||||||||||    
T  30273517 ctagaggagtt 30273507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 113 - 258
Target Start/End: Complemental strand, 9393150 - 9393007
Alignment:
Q  113 aagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtgctag 212  Q
    |||||||||||||||||||| |||  |||||||||||||||| || || |||| |  || | ||||| ||||||| ||| ||| ||| ||||||||||||    
T  9393150 aagtctctttcaatgtttgggcattgcttaatggtttgtttt-ggttgtttgtatgactctatgtttgtaaagtatttcttttggcacaccttgtgctag 9393052  T
Q  213 aggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||    
T  9393051 aggagtt-gcttttggtggttaatatatatttcattttttattgtt 9393007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 79 - 258
Target Start/End: Original strand, 24313916 - 24314093
Alignment:
Q  79 ttgtttttaggtttggtacagatgggtggtgttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctt---tctgttt 175  Q
    |||||||||||||||||| |||| ||||||| |||||||  || ||||| |||| |||| ||||||||||||| || || || |||| ||   |||||||    
T  24313916 ttgtttttaggtttggtagagataggtggtgctcaagtcctttccaatgcttgggcatcgcttaatggtttgtatt-ggttgtttgttttgactctgttt 24314014  T
Q  176 gtttttaaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
      || ||||||||||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||    
T  24314015 --ttgtaaagtaattcgtttagcacaccttgtgctagaggag-ttgcttttggt-gttaatatatattccattttttaatgtt 24314093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 7075829 - 7075684
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||       ||||||| || |||||| |||||  |||||    
T  7075829 gtaacttctatgctcaggttgttagataaagttaaatatatgtctttagcctggttgaaagccaataaagttgttttcagatttggttcagatatgtggt 7075730  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttt 154  Q
    |||||| || |||  |||| |||| |||||| ||||||||||||||    
T  7075729 gttcaaatcccttataatgcttgggcatcacgtaatggtttgtttt 7075684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 1379799 - 1379655
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || | || |||| ||||||||||||||||||||||| ||||||||||||       ||||||||||||||| | | ||   |||||    
T  1379799 gtaacttctattcccaggctgttagacaaagttaaatatatgtctttagcttggttgaaagccaataaggttgtttttaggtttgattctgagatgtggt 1379700  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgttt 153  Q
    | ||||||| ||| |||||||||| |||||| |||||||||||||    
T  1379699 gctcaagtcccttacaatgtttgggcatcacgtaatggtttgttt 1379655  T

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Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 11026802 - 11026673
Alignment:
Q  24 aagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgttcaagtctctttc 123  Q
    |||||| ||||||||||||||||| ||||||||| |||| ||||| ||        ||  |||| |||||| ||| || |||||||||||||||| ||||    
T  11026802 aagttgatagataaagttaaatatttgtctttagtctggatgaaatccaaaaaggctgcctttaagtttggcacaaataggtggtgttcaagtctgtttc 11026703  T
Q  124 aatgtttggacatcacttaatggtttgttt 153  Q
    |||||||| ||||| |||||||||||||||    
T  11026702 aatgtttgaacatcgcttaatggtttgttt 11026673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 36273023 - 36272972
Alignment:
Q  102 gggtggtgttcaagtctctttcaatgtttggacatcacttaatggtttgttt 153  Q
    ||||||||||||||||  |||||||| |||| ||||||||||| ||||||||    
T  36273023 gggtggtgttcaagtccgtttcaatgcttgggcatcacttaatagtttgttt 36272972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 7075638 - 7075583
Alignment:
Q  201 accttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||||||||||| ||||| ||||||| || |||||||| ||||||||||||||||||    
T  7075638 accttgtgctagaagagtt-gcttttgatgattaatata-attccattttttattgtt 7075583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 22295924 - 22296000
Alignment:
Q  181 taaagtaattcctttagcataccttgtgctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||||||| ||| ||| ||| |||||||| ||||||| || ||||||  ||||||||||||||| ||||||| ||||||    
T  22295924 taaagtagttcttttggcacaccttgtgttagaggaatt-gcttttaatggttaatatatatttcatttttgattgtt 22296000  T

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Target: scaffold0007 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 181846 - 181607
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||        | || |||||||||||| || || ||||||    
T  181846 gtaacttctattcccaggttgttagataaagttaaatatatgtctttagcctggttgaaagcaaaaaaggtggtctttaggtttggttcaaataggtggt 181747  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    ||||||||| ||| |||||||||| |||| | |||||||||||||| || || |||| |  || | | ||| ||||||| ||| | | ||| ||||||||    
T  181746 gttcaagtcccttacaatgtttgggcatcgcgtaatggtttgtttt-ggttggttgtataactttgtatttgtaaagtagttcttgtggcacaccttgtg 181648  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttt 251  Q
    ||||| ||||| ||||||||||||||||||| |||||||||||    
T  181647 ctagaagagtt-gcttttggtggttaatata-attccattttt 181607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 258
Target Start/End: Complemental strand, 7242 - 6997
Alignment:
Q  12 acttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggtgtt 111  Q
    |||||||||| || |||| ||||||||||||||| |||||||||||| ||||||||||||       |||||||||||||| ||| |||| ||||||  |    
T  7242 acttctattcccaggttgttagataaagttaaatttatgtctttagcatggttgaaagccaaaaaggttgtttttaggttttgtatagataggtggtact 7143  T
Q  112 caagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctt-tctgtttgtttttaaagtaattcctttagcataccttgtgc- 209  Q
    ||||||  || |||||||||| |||| |||||||||||| | |||| || |||| ||  || | | ||| || |||||||| ||||||| || ||||||     
T  7142 caagtcctttccaatgtttgggcatcgcttaatggtttg-tattggttgtttgttttgactctatttttgtagagtaattcttttagcacactttgtgct 7044  T
Q  210 tagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||||    
T  7043 tagaggag-ttgcttctggt-gttaatatatattccattttttattgtt 6997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 11795 - 11550
Alignment:
Q  9 gtaacttctattctcaagttgctagataaagttaaatatatgtctttagcctggttgaaagccnnnnnnnttgtttttaggtttggtacagatgggtggt 108  Q
    ||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||| |        ||||||||||||||||| ||||| ||||||    
T  11795 gtaacttttattctcaggttgttagataaagttaaatatatgtctttagcctggttgaaaacaaaaaatgttgtttttaggtttggttcagataggtggt 11696  T
Q  109 gttcaagtctctttcaatgtttggacatcacttaatggtttgtttttggatgcttgtctttctgtttgtttttaaagtaattcctttagcataccttgtg 208  Q
    | ||||||| ||| |||||||||| |||| | | |||||   ||||||  || |||| |  || | ||||| || ||||  || ||| |||  |||||||    
T  11695 gctcaagtcccttccaatgtttgggcatcgcgtgatggt---tttttgtttgtttgtatggctctgtgtttgtagagtagctcttttggcacgccttgtg 11599  T
Q  209 ctagaggagtttgcttttggtggttaatatatattccattttttattgtt 258  Q
    ||| |||||  ||||||||||||||||||||||| |||||||| ||||||    
T  11598 ctataggag-ctgcttttggtggttaatatatatcccatttttgattgtt 11550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 8404 - 8450
Alignment:
Q  203 cttgtgctagaggagtttgcttttggtggttaatatatattccattttt 251  Q
    ||||||||||| ||||| ||||||||||||||||||| |||||||||||    
T  8404 cttgtgctagaagagtt-gcttttggtggttaatata-attccattttt 8450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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