View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2085_1D_high_15 (Length: 221)
Name: NF2085_1D_high_15
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 20389490 - 20389681
Alignment:
| Q |
20 |
aatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcatattccgaacctacagatttggactttgctccagtgtccg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20389490 |
aatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcagattccgaacctacagatttggactttgctccagtgtccg |
20389589 |
T |
|
| Q |
120 |
aaccagcatcatttcccacaacttctgtcacgatggcagcattgttggttgtttctgactcattttgggttgaagatggtgaaagagtataa |
211 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20389590 |
aaccagcatcatttcccaacacttccgtcacgatggcagcattgttggttgtttctgactcattttgggttgaagatggtgaaagagtataa |
20389681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 20377118 - 20377309
Alignment:
| Q |
20 |
aatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcatattccgaacctacagatttggactttgctccagtgtccg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20377118 |
aatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcagattctgaacctacagatttggactttgctccagtgtccg |
20377217 |
T |
|
| Q |
120 |
aaccagcatcatttcccacaacttctgtcacgatggcagcattgttggttgtttctgactcattttgggttgaagatggtgaaagagtataa |
211 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||| ||| |||||||||| |||||||||||||| |
|
|
| T |
20377218 |
aaccagcatcatttcccacaacttccatcacgttggcagcaatgttggttgtttctaactcgtttggggttgaagactgtgaaagagtataa |
20377309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 20369189 - 20369388
Alignment:
| Q |
20 |
aatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcatattccgaacctacagatttggactttgctccagtgtccg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20369189 |
aatggcttcccgccaacctcatactttcgaggcctccctctgcccctttttaccggagcagattccgaacctacagatttggactttgctccagtgtccg |
20369288 |
T |
|
| Q |
120 |
aaccag---------catcatttcccacaacttctgtcacgatggcagcattgttggttgtttctgactcattttgggttgaagatggtgaaagagtata |
210 |
Q |
| |
|
||||| || ||||||| ||||||| |||| |||||| |||||||||||||| ||||||| ||||||||||||||| ||||||| |||||| |
|
|
| T |
20369289 |
gaccagcaggtccaacaccatttccttcaacttccgtcatgatggcggcattgttggttgtctctgacttattttgggttgaagacggtgaaaaagtata |
20369388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University