View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2085_1D_low_1 (Length: 696)

Name: NF2085_1D_low_1
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2085_1D_low_1
NF2085_1D_low_1
[»] chr2 (3 HSPs)
chr2 (23-674)||(31319315-31319969)
chr2 (250-415)||(36769592-36769757)
chr2 (291-353)||(27147461-27147523)
[»] chr3 (5 HSPs)
chr3 (57-442)||(26378323-26378718)
chr3 (218-428)||(11775470-11775680)
chr3 (291-428)||(14046998-14047135)
chr3 (73-125)||(11775726-11775778)
chr3 (89-124)||(14047309-14047344)
[»] chr6 (4 HSPs)
chr6 (194-418)||(7906441-7906665)
chr6 (218-424)||(17351149-17351357)
chr6 (231-326)||(115906-116001)
chr6 (73-125)||(17351051-17351103)
[»] chr4 (1 HSPs)
chr4 (163-418)||(6631766-6632024)
[»] chr7 (4 HSPs)
chr7 (212-327)||(32929532-32929647)
chr7 (53-125)||(32929374-32929447)
chr7 (242-353)||(15484904-15485015)
chr7 (212-321)||(4276728-4276837)
[»] chr8 (1 HSPs)
chr8 (73-127)||(9264121-9264175)


Alignment Details
Target: chr2 (Bit Score: 583; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 23 - 674
Target Start/End: Complemental strand, 31319969 - 31319315
Alignment:
Q  23 tgatgggctgcaatgtgatggtagtatcataaaaaggatccctagcctcaccaaatgacacagcaatagcattggggaatgacatcctcccaatgttgct 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31319969 tgatgggctgcaatgtgatggtagtatcataaaaaggatccctagccttaccaaatgacacagcaatagcattggggaatgacatcctcccaatgttact 31319870  T
Q  123 actttgagcta----atagggacttgtaatggggaaagattgcctcccattaacagggcccaaaagaggatttggactcaaagcagcaatgttagagttc 218  Q
    ||| |||||||    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31319869 actctgagctagggaagagggacttgtaatggggaaagattgcctcccattaacagggcccaaaagaggatttggactcaaagcagcaattttagagttc 31319770  T
Q  219 ctttttaccaaattaccaggattctctaagtttgtgttatgagtcaatttctccttccctagggaattgtcttccacaattggatttttatcaatttgca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31319769 ctttttaccaaattaccaggattctctaagtttgtgttatgagtcaatttctccttccctagggaattgtcttccacaattggatttttatcaatttgca 31319670  T
Q  319 tatccagtaatatgggaatagattcctcatcatttagcttagcctcccctatgacatgctcagaaccactttcaagcaattcaaatgagttgtgaagtgt 418  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31319669 tatccagtaatatgggaatagattcctcatcatttggcttagcctcccctatgacatgcttagaaccactttcaagcaattcaaatgagttgtgaagtgt 31319570  T
Q  419 gagattcatgtctccaatgttctggctctgatcattagcatgaagttcagtgttgaggactgcaatttcattgctttcaggagctgatatttcaccttcc 518  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31319569 gagattcatgtctccaatattctggctctgatcattagcatgaagttcagtgttgaggactgcaatttcattgctttcaggagctgatacttcaccttcc 31319470  T
Q  519 tcaaaatcatcaggtgaaacaaaaggggccctcctgaatgtcatcatgagaagagaccttagcagacttattaccaattgctgcaatgtgagggtgtact 618  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31319469 tcaaaatcatcagttgaaacaaaagggg-cctcctgaatgtcatcatgagaagataccttagcagacttattaccaattgctgcaatgtgagggtgtact 31319371  T
Q  619 tgtgcattaacagttatagcatcaattgtattgacaggaaatttagcacttttctt 674  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31319370 tgtgcattaacagttatagcatcaactgtattgacaggaaatttagcacttttctt 31319315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 250 - 415
Target Start/End: Complemental strand, 36769757 - 36769592
Alignment:
Q  250 ttgtgttatgagtcaatttctccttccctagggaattgtcttccacaattggatttttatcaatttgcatatccagtaatatgggaatagattcctcatc 349  Q
    ||||| ||||||||||||| || ||| ||||  ||||||| |||||| ||||||||||||| ||||||||||||| ||  |||||| | |||||||||||    
T  36769757 ttgtgctatgagtcaatttttctttcgctagataattgtcctccacatttggatttttatccatttgcatatccaatataatgggattggattcctcatc 36769658  T
Q  350 atttagcttagcctcccctatgacatgctcagaaccactttcaagcaattcaaatgagttgtgaag 415  Q
      || ||||||||||||||||||||||| ||||  || |||||||||| |||||||| ||||||||    
T  36769657 tcttggcttagcctcccctatgacatgcacagagtcattttcaagcaactcaaatgaattgtgaag 36769592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 27147461 - 27147523
Alignment:
Q  291 tccacaattggatttttatcaatttgcatatccagtaatatgggaatagattcctcatcattt 353  Q
    |||||| ||||||||||||| |||||||||||||||    ||||| ||||||||| |||||||    
T  27147461 tccacacttggatttttatccatttgcatatccagttcagtgggattagattccttatcattt 27147523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 1e-55; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 57 - 442
Target Start/End: Original strand, 26378323 - 26378718
Alignment:
Q  57 aggatccctagcctcaccaaatgacacagcaatagcattggggaatgacatcctcccaatgttgctactttgagct----aatagggacttgtaatgggg 152  Q
    |||||||||||| ||| ||| |||||||||| || ||||||||||||||| |||||||||||||||||| ||| ||    ||||||||||||||||||||    
T  26378323 aggatccctagcatcatcaagtgacacagcagtaacattggggaatgacaacctcccaatgttgctactctgatctagagaatagggacttgtaatgggg 26378422  T
Q  153 aaagattgcctcccattaacagggcccaaaagaggatt---tggactcaaagcagcaatgttagagttcctttttaccaaattaccaggattctctaagt 249  Q
    ||||  ||||||| |||||||||| |||| | ||||||   |  ||||||||||||||   |||||||||||||  |||| ||||||||||||||||       
T  26378423 aaagtctgcctcctattaacagggtccaacacaggattaccttaactcaaagcagcaagtgtagagttccttttatccaatttaccaggattctctataa 26378522  T
Q  250 ttgtgttatgagtcaatttctccttccctagggaattgtcttccacaattggatttttatcaatttgcatatccagtaatatgggaatagattcctcatc 349  Q
    ||| | |||||||||| || ||| ||  ||||||| |  |  ||||| ||||||||||||| | ||||||| ||||||   ||||| | | |||||||||    
T  26378523 ttgagctatgagtcaagttttccctctatagggaacttccccccacatttggatttttatccagttgcataaccagtatagtgggagtgggttcctcatc 26378622  T
Q  350 atttagcttagcctcccctatgacatgctcagaaccactttcaagcaattcaaatgagttgtgaagtgtgagattca---tgtctccaatgttctg 442  Q
    |  | |||||||||||||| ||||||| ||||   || |||||||||| ||||||||||||||||| |||| |||||   |||||||| |||||||    
T  26378623 acatggcttagcctcccctgtgacatgttcagcgtcattttcaagcaactcaaatgagttgtgaagagtgatattcaagttgtctccattgttctg 26378718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 218 - 428
Target Start/End: Complemental strand, 11775680 - 11775470
Alignment:
Q  218 cctttttaccaaattaccaggattctctaagtttgtgttatgagtcaatttctccttccctagggaattgtcttccacaattggatttttatcaatttgc 317  Q
    |||||||||||| |||| ||||| ||||| ||| ||| |||||  ||| || |||||||||||||| || || |||||| ||| ||||||| | ||||||    
T  11775680 cctttttaccaatttactaggatcctctatgttagtgctatgaaccaagttttccttccctagggacttttcctccacatttgaatttttagccatttgc 11775581  T
Q  318 atatccagtaatatgggaatagattcctcatcatttagcttagcctcccctatgacatgctcagaaccactttcaagcaattcaaatgagttgtgaagtg 417  Q
    ||||||| ||  |||||| |||| ||||  ||| ||   ||||||||| || | ||| ||||| || || ||||||| || | |||||||||||| ||||    
T  11775580 atatccaatataatgggagtagagtccttgtcacttgatttagcctccgctgtaacaggctcataatcattttcaagtaacttaaatgagttgtggagtg 11775481  T
Q  418 tgagattcatg 428  Q
    |||||||||||    
T  11775480 tgagattcatg 11775470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 428
Target Start/End: Complemental strand, 14047135 - 14046998
Alignment:
Q  291 tccacaattggatttttatcaatttgcatatccagtaatatgggaatagattcctcatcatttagcttagcctcccctatgacatgctcagaaccacttt 390  Q
    |||| |||||||||||||||||||||||||||||     |||| || ||| ||||  ||| ||  ||||||||||||||| ||| |||||| | |    |    
T  14047135 tccataattggatttttatcaatttgcatatccaaagtaatggaaacagagtccttttcacttgacttagcctcccctataacaggctcagtatcctgat 14047036  T
Q  391 caagcaattcaaatgagttgtgaagtgtgagattcatg 428  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  14047035 caagcaactcaaatgagttgtgaagtgtgatattcatg 14046998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 11775778 - 11775726
Alignment:
Q  73 ccaaatgacacagcaatagcattggggaatgacatcctcccaatgttgctact 125  Q
    ||||||||||||| | || |||||||||||||||||||||||||| |||||||    
T  11775778 ccaaatgacacagaagtaacattggggaatgacatcctcccaatgatgctact 11775726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 14047344 - 14047309
Alignment:
Q  89 tagcattggggaatgacatcctcccaatgttgctac 124  Q
    |||||||||||||||||| |||||||||||||||||    
T  14047344 tagcattggggaatgacagcctcccaatgttgctac 14047309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 1e-49; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 194 - 418
Target Start/End: Original strand, 7906441 - 7906665
Alignment:
Q  194 actcaaagcagcaatgttagagttcctttttaccaaattaccaggattctctaagtttgtgttatgagtcaatttctccttccctagggaattgtcttcc 293  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||| | | |||||||||||||| ||| |||| | |||||||| ||| ||||| ||||||    
T  7906441 actcaaagcaacaaagttagagttcctttttaccaagttaccagtactatctaagtttgtgttgtgattcaagtcctccttccttagtgaattatcttcc 7906540  T
Q  294 acaattggatttttatcaatttgcatatccagtaatatgggaatagattcctcatcatttagcttagcctcccctatgacatgctcagaaccactttcaa 393  Q
    ||| |||||||||||||| | |||||||||||||| ||||| || ||||| |||||| ||  |||||| | |||||| |||||||||| ||||| |||||    
T  7906541 acatttggatttttatcactgtgcatatccagtaaaatggggatcgattcttcatcacttgtcttagcataccctataacatgctcagtaccaccttcaa 7906640  T
Q  394 gcaattcaaatgagttgtgaagtgt 418  Q
    ||| |||||| || |||||||||||    
T  7906641 gcagttcaaaggaattgtgaagtgt 7906665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 218 - 424
Target Start/End: Original strand, 17351149 - 17351357
Alignment:
Q  218 cctttttaccaaattaccaggattctctaagtttgtgttatgagtcaatttctccttccctagggaattgtcttccacaattggatttttatcaatttgc 317  Q
    |||||||||| | |||| ||||| ||||| ||| ||| |||||  ||| || |||||||||||||| || || |||||| ||||||||||| | ||||||    
T  17351149 cctttttaccgatttactaggatcctctatgttagtgctatgaaccaagttttccttccctagggacttttcctccacatttggatttttagccatttgc 17351248  T
Q  318 atatc--cagtaatatgggaatagattcctcatcatttagcttagcctcccctatgacatgctcagaaccactttcaagcaattcaaatgagttgtgaag 415  Q
    |||||  || ||  |||||| |||| ||||  ||| |   ||||||||||||||| ||| ||||| || || ||||||| || |||||||||||||| ||    
T  17351249 atatccacaatataatgggagtagagtccttgtcactcgacttagcctcccctataacaggctcaaaatcattttcaagtaactcaaatgagttgtggag 17351348  T
Q  416 tgtgagatt 424  Q
    |||||||||    
T  17351349 tgtgagatt 17351357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 231 - 326
Target Start/End: Complemental strand, 116001 - 115906
Alignment:
Q  231 ttaccaggattctctaagtttgtgttatgagtcaatttctccttccctagggaattgtcttccacaattggatttttatcaatttgcatatccagt 326  Q
    ||||||| || ||||  ||||||||| |||||||   | |||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  116001 ttaccagtatcctctctgtttgtgttttgagtcatgctatccttccctagggaattgtcctccacacttggatttttaacaatttgcatatccagt 115906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 17351051 - 17351103
Alignment:
Q  73 ccaaatgacacagcaatagcattggggaatgacatcctcccaatgttgctact 125  Q
    ||||||||||||| | || ||| |||||||||||||||||||||| |||||||    
T  17351051 ccaaatgacacagaagtaacatcggggaatgacatcctcccaatgatgctact 17351103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 163 - 418
Target Start/End: Original strand, 6631766 - 6632024
Alignment:
Q  163 tcccattaacagggcccaaaagaggatt---tggactcaaagcagcaatgttagagttcctttttaccaaattaccaggattctctaagtttgtgttatg 259  Q
    ||||||||||||| ||||||| ||| ||   || ||||||| || ||| |||||| ||| | |||  ||  ||||||| | |||||||| ||||||||||    
T  6631766 tcccattaacaggacccaaaaaagggttacatgtactcaaatcaacaaggttagatttcatatttgtcatgttaccagtactctctaagattgtgttatg 6631865  T
Q  260 agtcaatttctccttccctagggaattgtcttccacaattggatttttatcaatttgcatatccagtaatatgggaatagattcctcatcatttagctta 359  Q
    ||| |||| |||||||| |||  |||| ||| || || || ||||||| ||||| | |||||||| ||  |||||  ||||||| |||||| | |  |||    
T  6631866 agtaaattcctccttccttagtaaattctctgccccattttgatttttgtcaatgtacatatccaatagaatggggttagattcttcatcactgatttta 6631965  T
Q  360 gcctcccctatgacatgctcagaaccactttcaagcaattcaaatgagttgtgaagtgt 418  Q
    || |||||||| || ||||||| | || |||||||||||||||| || || ||||||||    
T  6631966 gcatcccctataacctgctcagcatcattttcaagcaattcaaaagaattttgaagtgt 6632024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 212 - 327
Target Start/End: Original strand, 32929532 - 32929647
Alignment:
Q  212 agagttcctttttaccaaattaccaggattctctaagtttgtgttatgagtcaatttctccttccctagggaattgtcttccacaattggatttttatca 311  Q
    ||||||| |||| ||||| |||||| ||| ||||| ||||||| | |||| |||  || || || |||||||||| ||| ||||| |||||||||||||     
T  32929532 agagttctttttgaccaagttaccaagatcctctatgtttgtgctttgagccaagatcaccatctctagggaattttctgccacatttggatttttatcc 32929631  T
Q  312 atttgcatatccagta 327  Q
    ||||||| ||||||||    
T  32929632 atttgcaaatccagta 32929647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 32929374 - 32929447
Alignment:
Q  53 aaaaaggatccctagcctcaccaaatgacacagcaatagcatt-ggggaatgacatcctcccaatgttgctact 125  Q
    ||||||||| |||||| ||||||| ||||||| || ||||||| |||| |||||| ||||||||| ||||||||    
T  32929374 aaaaaggattcctagcatcaccaagtgacacaacagtagcattggggggatgacagcctcccaattttgctact 32929447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 353
Target Start/End: Original strand, 15484904 - 15485015
Alignment:
Q  242 ctctaagtttgtgttatgagtcaatttctccttccctagggaattgtcttccacaattggatttttatcaatttgcatatccagtaatatgggaatagat 341  Q
    ||||| ||| ||||||||| || | | || ||| ||||| ||| | || |||||| ||||||||||||| |||||||||||||||    ||||| |||||    
T  15484904 ctctatgttagtgttatgattccaatgcttcttgcctagagaaatttcctccacacttggatttttatccatttgcatatccagtgcagtgggattagat 15485003  T
Q  342 tcctcatcattt 353  Q
    |||| |||||||    
T  15485004 tccttatcattt 15485015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 321
Target Start/End: Complemental strand, 4276837 - 4276728
Alignment:
Q  212 agagttcctttttaccaaattaccaggattctctaagtttgtgttatgagtcaatttctccttccctagggaattgtcttccacaattggatttttatca 311  Q
    ||||||| |||||||||  |||| ||||||||||||||||||| ||||  |||    |||||||| |||||| || || || ||| ||  ||||||||||    
T  4276837 agagttcatttttaccactttactaggattctctaagtttgtgctatggttcagggcctccttccttagggagttttcctcaacacttatatttttatca 4276738  T
Q  312 atttgcatat 321  Q
     |||||||||    
T  4276737 ctttgcatat 4276728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 9264175 - 9264121
Alignment:
Q  73 ccaaatgacacagcaatagcattggggaatgacatcctcccaatgttgctacttt 127  Q
    ||||||||||||| | || |||||||||||||||||||||||||| |||||||||    
T  9264175 ccaaatgacacagaactaacattggggaatgacatcctcccaatgatgctacttt 9264121  T

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