View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085_1D_low_10 (Length: 375)
Name: NF2085_1D_low_10
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 55060520 - 55060688
Alignment:
| Q |
22 |
agtgtgacctaatcaaaccctgttgaaaaggaacaccaacttttgcagcataaccaagtgcagcaacaacaccacaatcaggaacaactataacaacatc |
121 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
55060520 |
agtgtggcctaatcaaaccctgttgaaaaggaacaccagcttttgcagcataaccaagtgcagcaacaacaccaaaatcaggaacaactataacaacatc |
55060619 |
T |
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| Q |
122 |
acaatcaacagaactc-ttagtagccaatatttcaccaaaccatgttcttgattcataaacagatttcc |
189 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
55060620 |
acaatcaacaggactctttagtagccaatatttcaccaaaccatcttcttgattcataaacagatttcc |
55060688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 240 - 375
Target Start/End: Original strand, 55060741 - 55060876
Alignment:
| Q |
240 |
ttttggttctggacgagaaacaagacaatgagattgaacaccacttttatccacaaccacaatctcaccaggacaaacctctctttcataagtagcttca |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
55060741 |
ttttggttctggacgagaaacaagacaatgagattgaacaccacttttatccacaaccacaatctcaccaggataaacctctctttcataagtagcttca |
55060840 |
T |
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| Q |
340 |
atcaaatcaagtgcacatgtttccgaagcaaaaaca |
375 |
Q |
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| T |
55060841 |
atcaaatcaagtgcacatgtttccgaagcaaaaaca |
55060876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 27356705 - 27356828
Alignment:
| Q |
22 |
agtgtgacctaatcaaaccctgttgaaaaggaacaccaacttttgcagcataaccaagtgcagcaacaacaccacaatcaggaacaactataacaacatc |
121 |
Q |
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|||||||||||||||| || || ||||||||||||||| |||| |||||||||||||| ||||| ||||||||| ||||||||||| |||| |||||||| |
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| T |
27356705 |
agtgtgacctaatcaacccttgctgaaaaggaacaccagctttcgcagcataaccaagagcagccacaacaccagaatcaggaacagctatcacaacatc |
27356804 |
T |
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| Q |
122 |
acaatcaacagaactcttagtagc |
145 |
Q |
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||||||||||| ||||| |||||| |
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| T |
27356805 |
acaatcaacaggactctcagtagc |
27356828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 303 - 375
Target Start/End: Original strand, 27356988 - 27357060
Alignment:
| Q |
303 |
ctcaccaggacaaacctctctttcataagtagcttcaatcaaatcaagtgcacatgtttccgaagcaaaaaca |
375 |
Q |
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||||||||| |||| || || |||||||||||||||||||||||||| ||||| || || |||||||||||| |
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| T |
27356988 |
ctcaccagggaaaacttccctctcataagtagcttcaatcaaatcaagagcacaagtctcagaagcaaaaaca |
27357060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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