View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2085_1D_low_11 (Length: 368)
Name: NF2085_1D_low_11
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_low_11 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 3 - 368
Target Start/End: Original strand, 34348756 - 34349122
Alignment:
| Q |
3 |
ttggtgttattagggtgaatcttcaaatggtagtttgtatactaccgaagtgttgcttgagggttgcacctctttgtcttaacctggaaatcgaccatgg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| || |
|
|
| T |
34348756 |
ttggtgttattagggtgaatcttcaaatggtagtttgtatactaccgaagtgttgcttgagggttgtacctctttgtcttaacttggaaatcgaccaagg |
34348855 |
T |
|
| Q |
103 |
agctatagtaaatatgatccggtggacattgacgtgcaaggactttaagagatagatgatcatcctcgatatgccatattgtgatttgatagtagcaa-g |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| |||| | |
|
|
| T |
34348856 |
agctatagtaaatatgatccggtggacattgacgtgcaaggactttaagagagagatgatcgtccgcgatatgccatattgtgatttgatagttgcaagg |
34348955 |
T |
|
| Q |
202 |
tgttcttannnnnnncttcaatactcatgatatatgtcatgttaaaggaagatgtgatgttttcgataaatgtttgaaatgctccaaattccatgtctca |
301 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34348956 |
tgttcttatttttttcttcaatactcatgatatatgtgatgttaaagaaagatgtgatgttgtccataaatgtttgaaatgctccaaattccatgtctca |
34349055 |
T |
|
| Q |
302 |
aaaaacaaacacaattatattcgtatattataatacgatatgcaataaagataaaatcaattaaatt |
368 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||| |
|
|
| T |
34349056 |
aaaaacaaacacaattatattagtatattatagtatgatatacaataaagataaaatcaattaaatt |
34349122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University