View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085_1D_low_14 (Length: 322)
Name: NF2085_1D_low_14
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 313
Target Start/End: Original strand, 54429056 - 54429363
Alignment:
| Q |
7 |
ccgccgctataaacaagcaagttaagatggtaaagtatacctttttgacatttagtaggaagttttaatcttaactcatttgatttgattgggaaatttg |
106 |
Q |
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| T |
54429056 |
ccgccgctataaacaagcaagttaagatggtaaagtatacctttttgacatttagtaggaagttttaatcttaactcatttgatttgattgggaaatttg |
54429155 |
T |
|
| Q |
107 |
cttgtacattttaggtgtgagagtttaagtgagctaacatttatttcctaagcttataaacaaagatgtaagcatagacttttgatatttctaagttaca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
54429156 |
cttgtacattttaggtgtgagagtttaagtgagctaacatttatttcctaagcttataaacaaagatgtaagcatagacttttgatatatctaagttaca |
54429255 |
T |
|
| Q |
207 |
aaaagagcctaaatgtgaacaattttgaacttctcactcactg-nnnnnnncaagaacaataagaagtaatgcaacagccaaaacaaagagaagtaatca |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54429256 |
aaaagagcctaaatgtgaacaattttgaacttctcactcactgttttttttcaagaacaataagaagtaatgcaacagccaaaacaaagagaagtaatca |
54429355 |
T |
|
| Q |
306 |
agtattat |
313 |
Q |
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|||||||| |
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| T |
54429356 |
agtattat |
54429363 |
T |
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