View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2085_1D_low_17 (Length: 309)

Name: NF2085_1D_low_17
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2085_1D_low_17
NF2085_1D_low_17
[»] chr8 (17 HSPs)
chr8 (147-306)||(3325132-3325291)
chr8 (12-145)||(28602614-28602747)
chr8 (12-145)||(4706151-4706284)
chr8 (12-148)||(15925502-15925638)
chr8 (152-252)||(3262763-3262863)
chr8 (152-258)||(3286652-3286758)
chr8 (161-305)||(3374989-3375133)
chr8 (155-249)||(13808672-13808766)
chr8 (155-300)||(7164792-7164938)
chr8 (161-253)||(3267344-3267436)
chr8 (152-300)||(3314774-3314922)
chr8 (161-305)||(3391682-3391826)
chr8 (152-260)||(3398657-3398765)
chr8 (161-222)||(3364163-3364224)
chr8 (152-300)||(3407460-3407608)
chr8 (75-145)||(18983071-18983140)
chr8 (161-222)||(31175841-31175902)
[»] chr5 (8 HSPs)
chr5 (12-145)||(5518975-5519108)
chr5 (12-145)||(42786052-42786185)
chr5 (12-145)||(27197780-27197914)
chr5 (152-305)||(12599189-12599342)
chr5 (67-143)||(15599458-15599535)
chr5 (163-260)||(20812233-20812330)
chr5 (163-260)||(20838588-20838685)
chr5 (200-300)||(15802827-15802927)
[»] chr2 (8 HSPs)
chr2 (12-145)||(808177-808310)
chr2 (12-145)||(10416508-10416641)
chr2 (39-145)||(2588428-2588533)
chr2 (12-145)||(4698464-4698597)
chr2 (152-300)||(14767084-14767232)
chr2 (77-145)||(44324742-44324810)
chr2 (75-145)||(45333308-45333377)
chr2 (75-146)||(35111007-35111078)
[»] chr1 (10 HSPs)
chr1 (12-145)||(16104766-16104899)
chr1 (17-145)||(14650840-14650969)
chr1 (17-145)||(14654840-14654969)
chr1 (17-145)||(14660631-14660760)
chr1 (17-145)||(16101315-16101443)
chr1 (39-145)||(29287704-29287809)
chr1 (17-145)||(17478215-17478343)
chr1 (12-145)||(19656889-19657022)
chr1 (71-145)||(47050059-47050133)
chr1 (77-145)||(17652807-17652875)
[»] chr4 (5 HSPs)
chr4 (37-145)||(5358103-5358211)
chr4 (37-142)||(30873893-30873998)
chr4 (39-145)||(27560628-27560733)
chr4 (51-146)||(51534234-51534328)
chr4 (51-145)||(18693730-18693823)
[»] chr6 (13 HSPs)
chr6 (12-145)||(27527812-27527946)
chr6 (12-145)||(33063677-33063810)
chr6 (37-136)||(15969961-15970060)
chr6 (40-145)||(28041304-28041408)
chr6 (11-145)||(33056197-33056334)
chr6 (67-145)||(25477665-25477742)
chr6 (19-123)||(30130911-30131015)
chr6 (37-142)||(6952798-6952903)
chr6 (77-145)||(22014634-22014702)
chr6 (191-249)||(5447124-5447182)
chr6 (170-249)||(5447554-5447633)
chr6 (75-125)||(14011684-14011734)
chr6 (149-222)||(5179535-5179608)
[»] scaffold0014 (1 HSPs)
scaffold0014 (17-145)||(115263-115391)
[»] scaffold0713 (1 HSPs)
scaffold0713 (12-146)||(1277-1412)
[»] chr3 (9 HSPs)
chr3 (12-146)||(28104380-28104515)
chr3 (17-145)||(5705065-5705193)
chr3 (37-145)||(7688425-7688533)
chr3 (39-145)||(19435605-19435710)
chr3 (12-146)||(28058008-28058143)
chr3 (12-146)||(28068433-28068568)
chr3 (147-300)||(32411215-32411365)
chr3 (161-300)||(6905952-6906091)
chr3 (76-125)||(11201241-11201290)
[»] scaffold0654 (2 HSPs)
scaffold0654 (12-145)||(3958-4091)
scaffold0654 (12-145)||(5310-5445)
[»] chr7 (4 HSPs)
chr7 (12-145)||(28804121-28804254)
chr7 (17-145)||(26525364-26525492)
chr7 (75-125)||(36263728-36263778)
chr7 (82-146)||(18057979-18058043)
[»] scaffold0002 (3 HSPs)
scaffold0002 (12-143)||(406455-406586)
scaffold0002 (53-145)||(10306-10398)
scaffold0002 (12-143)||(423827-423957)
[»] scaffold0012 (1 HSPs)
scaffold0012 (61-151)||(233048-233138)
[»] scaffold0406 (1 HSPs)
scaffold0406 (45-145)||(4129-4227)
[»] scaffold0468 (1 HSPs)
scaffold0468 (189-300)||(6320-6431)


Alignment Details
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 147 - 306
Target Start/End: Original strand, 3325132 - 3325291
Alignment:
Q  147 ctttagcaatcagggttgtcaaggattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccagataatacaagagttttcaaagattt 246  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  3325132 ctttagcaatcagcgttgtcaaggattccatctgcccgaaaccttcttccaacttgtcaatctttgaacaaccagataatataagagtttccaaagattt 3325231  T
Q  247 caattgaaagatctaccctggaagatttctaagacttgctcagtccttcaaattcaacaa 306  Q
    ||||||| |||||| |||||| ||||||||||||||||| ||||||||||||||||||||    
T  3325232 caattgatagatctcccctgggagatttctaagacttgcacagtccttcaaattcaacaa 3325291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 28602747 - 28602614
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| ||||||||| ||||||    
T  28602747 tggatatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgtcaagtgtcgttaataggcttgccggactaggatgttctaattcgtg 28602648  T
Q  112 cgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    ||||||||||||||||||||||||||||||||||    
T  28602647 cgccggtcacgattgtgaattttgggtcgtgaca 28602614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 4706284 - 4706151
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||| ||||| |||||||||||| |||    
T  4706284 tggatatcattttaaatgaatttcgatttaaaaattgtttaaattatagtttgttaagtgtcgtcaacgggcttgccggactaggatgttctagtttgtg 4706185  T
Q  112 cgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    ||||||||||||||||||||||||||||||||||    
T  4706184 cgccggtcacgattgtgaattttgggtcgtgaca 4706151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 15925502 - 15925638
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| ||||||||||||||    | |||||||||||||||||||||||| || | ||||| | |||||||||||| | ||||| |||| |||| || |||    
T  15925502 tggatatcattttaagtgagaaacaatttgaaaattgtttaaattataggttatcaagtgccatcaataggcttgacggactaggatgctctaatttgtg 15925601  T
Q  112 cgccggtcacgattgtgaattttgggtcgtgacacct 148  Q
    |||||||||||||  | ||||||||||||||||||||    
T  15925602 cgccggtcacgatattaaattttgggtcgtgacacct 15925638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 3262763 - 3262863
Alignment:
Q  152 gcaatcagggttgtcaaggattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccagataatacaagagttttcaaagatttcaatt 251  Q
    |||||||| ||||||||||||||||||||| | |   |||||||||| |||||||||||||| |||||||| | ||  ||||||||||||||||||||||    
T  3262763 gcaatcagtgttgtcaaggattccatctgcactatgtcttcttccaatttgtcaatctttgagcaaccagaaagtatgagagttttcaaagatttcaatt 3262862  T
Q  252 g 252  Q
    |    
T  3262863 g 3262863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 152 - 258
Target Start/End: Original strand, 3286652 - 3286758
Alignment:
Q  152 gcaatcagggttgtcaaggattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccagataatacaagagttttcaaagatttcaatt 251  Q
    |||||||| ||||||||||||||||||||| | |   |||||||||||||||||||||||||||||||||| |  |  ||||| ||||||||||||| ||    
T  3286652 gcaatcagtgttgtcaaggattccatctgcactatgtcttcttccaacttgtcaatctttgaacaaccagaaaggatgagagtgttcaaagatttcagtt 3286751  T
Q  252 gaaagat 258  Q
    || ||||    
T  3286752 gatagat 3286758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 161 - 305
Target Start/End: Complemental strand, 3375133 - 3374989
Alignment:
Q  161 gttgtcaaggattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccagataatacaagagttttcaaagatttcaattgaaagatct 260  Q
    |||||||||||||||||||||   |   ||||||||||||||| |||||||||||||||||| | || |||||||||||||  |||||| ||| |||||     
T  3375133 gttgtcaaggattccatctgcattatgtcttcttccaacttgttaatctttgaacaaccagaaagtataagagttttcaaaagtttcaaatgatagatca 3375034  T
Q  261 accctggaagatttctaagacttgctcagtccttcaaattcaaca 305  Q
     || ||| |||||  |||||||||  ||||| || ||||||||||    
T  3375033 cccttgggagattggtaagacttgtacagtctttgaaattcaaca 3374989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 13808766 - 13808672
Alignment:
Q  155 atcagggttgtcaaggattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccagataatacaagagttttcaaagatttcaa 249  Q
    ||||| ||||||||||||||||||||  | |   |||||||||||||||||||||||||||||||||| || |  ||||||||||| ||||||||    
T  13808766 atcagtgttgtcaaggattccatctggactatgtcttcttccaacttgtcaatctttgaacaaccagaaaagattagagttttcaatgatttcaa 13808672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 300
Target Start/End: Original strand, 7164792 - 7164938
Alignment:
Q  155 atcagggttgtcaaggattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccagataatacaagagttttcaaagatttcaa-ttga 253  Q
    ||||| ||||||||||||| |||||||   |   |||||||||||| | ||||||||||||||||||| |  |  ||||||||||| |||||||| ||||    
T  7164792 atcagtgttgtcaaggatttcatctgcattatgtcttcttccaactaggcaatctttgaacaaccagaaaggatgagagttttcaatgatttcaacttga 7164891  T
Q  254 aagatctaccctggaagatttctaagacttgctcagtccttcaaatt 300  Q
     |||| | || ||| ||||| ||||||||||  ||||||||||||||    
T  7164892 tagatattccttgggagattgctaagacttgtacagtccttcaaatt 7164938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 3267344 - 3267436
Alignment:
Q  161 gttgtcaaggattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccagataatacaagagttttcaaagatttcaattga 253  Q
    ||||| ||||||||||||||| | |  |||||||| |||||||||||||||||||||||||| |  |  |||||| ||||||| |||||||||    
T  3267344 gttgttaaggattccatctgcactatgccttcttctaacttgtcaatctttgaacaaccagaaatgatgagagttgtcaaagacttcaattga 3267436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 300
Target Start/End: Complemental strand, 3314922 - 3314774
Alignment:
Q  152 gcaatcagggttgtcaaggattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccagataatacaagagttttcaaagatttcaatt 251  Q
    ||||| ||||||||||| |||| ||| ||| | | | |||||||||| || |||||||||||||||||||| |  |  | ||||||||  ||| ||||||    
T  3314922 gcaattagggttgtcaatgatttcatttgcactatatcttcttccaatttttcaatctttgaacaaccagaaagaatgaaagttttcaccgatgtcaatt 3314823  T
Q  252 gaaagatctaccctggaagatttctaagacttgctcagtccttcaaatt 300  Q
    || ||||||  | ||| ||||||||||||||||  |||||||| |||||    
T  3314822 gatagatctctcttgggagatttctaagacttgtacagtccttgaaatt 3314774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 305
Target Start/End: Original strand, 3391682 - 3391826
Alignment:
Q  161 gttgtcaaggattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccagataatacaagagttttcaaagatttcaattgaaagatct 260  Q
    ||||||||||||||||| ||| | | | |||||||||| ||||||||||||||||||||||| |  |  ||||||| ||  | | |||||||| ||||||    
T  3391682 gttgtcaaggattccatttgcactatatcttcttccaatttgtcaatctttgaacaaccagaaaggatgagagtttccactgttctcaattgatagatct 3391781  T
Q  261 accctggaagatttctaagacttgctcagtccttcaaattcaaca 305  Q
      | ||| ||||| |||||||| |  |||||||||||||| ||||    
T  3391782 ctcttgggagattgctaagactcgtacagtccttcaaatttaaca 3391826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 260
Target Start/End: Original strand, 3398657 - 3398765
Alignment:
Q  152 gcaatcagggttgtcaaggattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccagataatacaagagttttcaaagatttcaatt 251  Q
    ||||| || ||||||||||||||||| |||   | | |||||||||| ||||||||||||||||||||||| |  |  ||||||||||  ||||||||||    
T  3398657 gcaattagagttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttgaacaaccagaaataatgagagttttcactgatttcaatt 3398756  T
Q  252 gaaagatct 260  Q
    || ||||||    
T  3398757 gatagatct 3398765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 3364224 - 3364163
Alignment:
Q  161 gttgtcaaggattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccaga 222  Q
    ||||||||||||||||| ||| | | | |||||||||| |||||||||||||||||||||||    
T  3364224 gttgtcaaggattccatttgcactatatcttcttccaatttgtcaatctttgaacaaccaga 3364163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 300
Target Start/End: Original strand, 3407460 - 3407608
Alignment:
Q  152 gcaatcagggttgtcaaggattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccagataatacaagagttttcaaagatttcaatt 251  Q
    ||||| || ||||||||||||| ||| ||| | | | |||||||||| ||| ||||||||||||||||||| |  |  ||||||||||  ||| |||||     
T  3407460 gcaattagagttgtcaaggatttcatttgcactatatcttcttccaatttgacaatctttgaacaaccagaaaggatgagagttttcactgatctcaatc 3407559  T
Q  252 gaaagatctaccctggaagatttctaagacttgctcagtccttcaaatt 300  Q
    || ||||||  | ||| |||||   ||||||||| || |||||||||||    
T  3407560 gatagatctctcttgggagattaacaagacttgcacaatccttcaaatt 3407608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 18983071 - 18983140
Alignment:
Q  75 tcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgatt-gtgaattttgggtcgtgaca 145  Q
    ||||||||||||||   |||  ||||||||||||||||||||||||||||| |||  |||||||||||||||    
T  18983071 tcaataggcttgccgagctagaatgttctagttcgtgcgccggtcacgattagtg--ttttgggtcgtgaca 18983140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 31175902 - 31175841
Alignment:
Q  161 gttgtcaaggattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccaga 222  Q
    ||||||||||||||||| |||   | | |||||||||| ||||||||| |||||||||||||    
T  31175902 gttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatcattgaacaaccaga 31175841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 5519108 - 5518975
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5519108 tggatatcattttaagtgaatttcgatttaaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccggactatgatgttctagttcgtg 5519009  T
Q  112 cgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    ||||||||||||||||||||||||||||||||||    
T  5519008 cgccggtcacgattgtgaattttgggtcgtgaca 5518975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 42786052 - 42786185
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| |||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  42786052 tggatatcattttaaatgaattttgatttaaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccggactaggatgttctagttcgtg 42786151  T
Q  112 cgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    |||||||||||||| | |||||||||||||||||    
T  42786152 cgccggtcacgattataaattttgggtcgtgaca 42786185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 27197914 - 27197780
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| |||||||||||||||  || |||| |||||| |||| |||||||||||| |||||| |||| ||| ||||||  |||| ||||||||||||||||    
T  27197914 tggatatcattttaagtgaaagtcaatttaaaaattatttatattatagtttgtcaagtgttgtcattagacttgccgaactaggatgttctagttcgtg 27197815  T
Q  112 cgccggtcacgattgtgaa-ttttgggtcgtgaca 145  Q
    ||||| ||||||||||||| |||||||||||||||    
T  27197814 cgccgatcacgattgtgaatttttgggtcgtgaca 27197780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 152 - 305
Target Start/End: Original strand, 12599189 - 12599342
Alignment:
Q  152 gcaatcagggttgtcaaggattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccagataatacaagagttttcaaagatttcaatt 251  Q
    |||||||| ||||||||||||||||||||  | |   ||||||||||||||  |||||||||||||||||| | || |||||||||||||| ||||||||    
T  12599189 gcaatcagtgttgtcaaggattccatctgtactatgtcttcttccaacttgctaatctttgaacaaccagaaagtataagagttttcaaagttttcaatt 12599288  T
Q  252 gaaagatctaccctggaagatttctaagacttgctcagtccttcaaattcaaca 305  Q
    || |||||| || ||| |||||  |||||||||  |||||||| ||||||||||    
T  12599289 gatagatctcccgtgggagattggtaagacttgtacagtccttgaaattcaaca 12599342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 15599458 - 15599535
Alignment:
Q  67 aagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtga-attttgggtcgtga 143  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||| | ||||||||| |||  |||||||||||||    
T  15599458 aagtgtcgtcaataggcttgccgaactaggatgttctagttcgtgcgtccgtcacgattttgagtttttgggtcgtga 15599535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 20812330 - 20812233
Alignment:
Q  163 tgtcaaggattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccagataatacaagagttttcaaagatttcaattgaaagatct 260  Q
    ||||||||||||||| |||   | | ||||||||||||| |||||||||||||||||||| |  | |||||||||||  ||| |||||| | ||||||    
T  20812330 tgtcaaggattccatttgcattatatcttcttccaacttctcaatctttgaacaaccagaaagaataagagttttcaccgatatcaatttatagatct 20812233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 20838685 - 20838588
Alignment:
Q  163 tgtcaaggattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccagataatacaagagttttcaaagatttcaattgaaagatct 260  Q
    ||||||||||||||| |||   | | |||||||||| || |||||||||||||||||||| |  | |||||||||||  ||| |||||||| ||||||    
T  20838685 tgtcaaggattccatttgcattatatcttcttccaatttctcaatctttgaacaaccagaaagaataagagttttcaccgatatcaattgatagatct 20838588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 300
Target Start/End: Complemental strand, 15802927 - 15802827
Alignment:
Q  200 ttgtcaatctttgaacaaccagataatacaagagttttcaaagatttcaattgaaagatctaccctggaagatttctaagacttgctcagtccttcaaat 299  Q
    ||||||||||||||||||||||| |  |  ||||||||||  | | |||||||| ||||||  | ||| ||||| |||||||| |  |||||||||||||    
T  15802927 ttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattgatagatctctcttgggagattgctaagactcgtacagtccttcaaat 15802828  T
Q  300 t 300  Q
    |    
T  15802827 t 15802827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 808310 - 808177
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  808310 tggatatcattttaaatgaatttcgatttaaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccggactaggatgttctagttcgtg 808211  T
Q  112 cgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    ||||||||||||||||||||||||||||||||||    
T  808210 cgccggtcacgattgtgaattttgggtcgtgaca 808177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 10416508 - 10416641
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| |||||||||||||||  || |||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| |||| |||||||||||    
T  10416508 tggatatcattttaagtgaaagtcaatttgaaaattgtttaaattgtagtttgtcaagtgtcgtcaataggcttgccggactaggatgctctagttcgtg 10416607  T
Q  112 cgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    |||||||||||||  |||||||||||||||||||    
T  10416608 cgccggtcacgatattgaattttgggtcgtgaca 10416641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 2588428 - 2588533
Alignment:
Q  39 ttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgggt 138  Q
    |||||||||||||||| ||||||| |  |||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  2588428 ttgaaaattgtttaaactatagtt-gccaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccgttcacgattgtgaattttgggt 2588526  T
Q  139 cgtgaca 145  Q
    |||||||    
T  2588527 cgtgaca 2588533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 4698464 - 4698597
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| ||||||  |||||||  || ||||||||||||||||||||||||||||| ||| ||||| ||||| |||||| ||||| ||||||||||||| ||    
T  4698464 tggatatcattacaagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggtcgttaatagacttgccggactaggatgttctagttcatg 4698563  T
Q  112 cgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    ||||||||||||   |||||||||||||||||||    
T  4698564 cgccggtcacgaaattgaattttgggtcgtgaca 4698597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 300
Target Start/End: Original strand, 14767084 - 14767232
Alignment:
Q  152 gcaatcagggttgtcaaggattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccagataatacaagagttttcaaagatttcaatt 251  Q
    |||||||| | ||||||||||||||| ||| | | | |||||||||| ||||||||||||||||| || || |  |  ||||||||||||||||||||||    
T  14767084 gcaatcagtgatgtcaaggattccatttgcacaatatcttcttccaatttgtcaatctttgaacagccggaaaggatgagagttttcaaagatttcaatt 14767183  T
Q  252 gaaagatctaccctggaagatttctaagacttgctcagtccttcaaatt 300  Q
    || ||||||  | ||| ||||||  ||||||||  ||||||||||||||    
T  14767184 gatagatctctcttgggagattttcaagacttgtacagtccttcaaatt 14767232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 44324742 - 44324810
Alignment:
Q  77 aataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    |||||||||||| | |||  ||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  44324742 aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtcgtgaca 44324810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 45333308 - 45333377
Alignment:
Q  75 tcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgatt-gtgaattttgggtcgtgaca 145  Q
    |||||||||||||| | |||  ||||||||||||||||||||||||||||| |||  |||||||||||||||    
T  45333308 tcaataggcttgccgggctagaatgttctagttcgtgcgccggtcacgattagtg--ttttgggtcgtgaca 45333377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 35111007 - 35111078
Alignment:
Q  75 tcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgatt-gtgaattttgggtcgtgacac 146  Q
    |||||||||||||  | |||  |||||||||||||| |||||||||||||| |||  ||||||||||||||||    
T  35111007 tcaataggcttgcagggctagaatgttctagttcgtacgccggtcacgattagtg-tttttgggtcgtgacac 35111078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 16104766 - 16104899
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| |||||||||||||||  || ||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||| |||| |||||||||||    
T  16104766 tggatatcattttaagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtagtcaataggcttgccggactaggatgctctagttcgtg 16104865  T
Q  112 cgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    |||||||||||||  |||||||||||||||||||    
T  16104866 cgccggtcacgatattgaattttgggtcgtgaca 16104899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 14650840 - 14650969
Alignment:
Q  17 atcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccg 116  Q
    |||||||||||||||  || ||||||||||| ||||||||||||||||| |||||| |||| |||||||||| ||||| |||||||||||||||||||||    
T  14650840 atcattttaagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgccg 14650939  T
Q  117 gtcacgattgtgaa-ttttgggtcgtgaca 145  Q
    |||||||||||||| |||||||||||||||    
T  14650940 gtcacgattgtgaatttttgggtcgtgaca 14650969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 14654840 - 14654969
Alignment:
Q  17 atcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccg 116  Q
    |||||||||||||||  || ||||||||||| ||||||||||||||||| |||||| |||| |||||||||| ||||| |||||||||||||||||||||    
T  14654840 atcattttaagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgccg 14654939  T
Q  117 gtcacgattgtgaa-ttttgggtcgtgaca 145  Q
    |||||||||||||| |||||||||||||||    
T  14654940 gtcacgattgtgaatttttgggtcgtgaca 14654969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 14660631 - 14660760
Alignment:
Q  17 atcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccg 116  Q
    |||||||||||||||  || ||||||||||| ||||||||||||||||| |||||| |||| |||||||||| ||||| |||||||||||||||||||||    
T  14660631 atcattttaagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtgcgccg 14660730  T
Q  117 gtcacgattgtgaa-ttttgggtcgtgaca 145  Q
    |||||||||||||| |||||||||||||||    
T  14660731 gtcacgattgtgaatttttgggtcgtgaca 14660760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 16101315 - 16101443
Alignment:
Q  17 atcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccg 116  Q
    |||||||||||||||  || | ||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||| |||| ||||||||||||||||    
T  16101315 atcattttaagtgaaagtcaacttgaaaattgtttaaattatagtttgtcaagtgtagtcaataggcttgccggactaggatgctctagttcgtgcgccg 16101414  T
Q  117 gtcacgattgtgaattttgggtcgtgaca 145  Q
    ||||||||  |||||||||||||||||||    
T  16101415 gtcacgatattgaattttgggtcgtgaca 16101443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 39 - 145
Target Start/End: Complemental strand, 29287809 - 29287704
Alignment:
Q  39 ttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgggt 138  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  29287809 ttgaaaattgtttaaattatagtt-gtcaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgatcgtgaattttgggt 29287711  T
Q  139 cgtgaca 145  Q
    |||||||    
T  29287710 cgtgaca 29287704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 17478343 - 17478215
Alignment:
Q  17 atcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccg 116  Q
    |||||||||||||||  || ||||| ||| ||||| ||||||||||||| |||||| |||||| ||||||||  |||| |||||||||||||||||||||    
T  17478343 atcattttaagtgaaagtcaatttggaaaatgtttgaattatagtttgtcaagtgttgtcaattggcttgccgaactaggatgttctagttcgtgcgccg 17478244  T
Q  117 gtcacgattgtgaattttgggtcgtgaca 145  Q
    |||||||||||||||||||||||||||||    
T  17478243 gtcacgattgtgaattttgggtcgtgaca 17478215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 19657022 - 19656889
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| |||||| ||||||||  |  ||||||||||||||||||||||||||||| |||  | ||||||||||||||| ||||| |||| |||||||||||    
T  19657022 tggatatcattataagtgaaagtaaatttgaaaattgtttaaattatagtttgtcaaggattgtcaataggcttgccggactaggatgctctagttcgtg 19656923  T
Q  112 cgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    |||||||||||||  ||||| |||||||||||||    
T  19656922 cgccggtcacgatattgaatcttgggtcgtgaca 19656889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 47050133 - 47050059
Alignment:
Q  71 gtcgtcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    |||||||||| ||||| | ||||| |||||||||||| ||||||| |||||| ||||||||||||||||||||||    
T  47050133 gtcgtcaatatgcttgtcggactaggatgttctagtttgtgcgccagtcacggttgtgaattttgggtcgtgaca 47050059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 17652875 - 17652807
Alignment:
Q  77 aataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    |||||||||||| | |||  ||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  17652875 aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtcgtgaca 17652807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 5358211 - 5358103
Alignment:
Q  37 atttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgg 136  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |  |||||||    
T  5358211 atttgaaaattgtttaaattatagtttgtcaagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggtcacgattttagattttgg 5358112  T
Q  137 gtcgtgaca 145  Q
    |||||||||    
T  5358111 gtcgtgaca 5358103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 30873998 - 30873893
Alignment:
Q  37 atttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgg 136  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  30873998 atttaaaaattgtttaaattatagtttgtcaagtgtcgtcaataggcttgccggactaagatgttctagtttgtgcgccggtcacgattttgaattttgg 30873899  T
Q  137 gtcgtg 142  Q
    | ||||    
T  30873898 gccgtg 30873893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 145
Target Start/End: Complemental strand, 27560733 - 27560628
Alignment:
Q  39 ttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgggt 138  Q
    |||||||||||||||||||||||| |  ||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||    
T  27560733 ttgaaaattgtttaaattatagtt-gccaagtgtcgtcaataggcttgccgaactaggatgttctagttcgtgcgccggtcacgattgtgaattttgggt 27560635  T
Q  139 cgtgaca 145  Q
    | |||||    
T  27560634 cctgaca 27560628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 51534234 - 51534328
Alignment:
Q  51 taaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgacac 146  Q
    |||||||||||| || |||||| ||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51534234 taaattatagtt-gtcaagtgtggtcaataggcttgccggactagaatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgacac 51534328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 18693823 - 18693730
Alignment:
Q  51 taaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    |||||||||||| || | |||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18693823 taaattatagtt-gtcatgtgtcgtcaataggcttgccggactagaatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgaca 18693730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 27527812 - 27527946
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| |||||||||||||||  || ||||||||||| ||||||||||||||||| |||||| |||| |||||||||| ||||| ||||||||||||||||    
T  27527812 tggatatcattttaagtgaaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggcttgccggactaggatgttctagttcgtg 27527911  T
Q  112 cgccggtcacgattgtgaa-ttttgggtcgtgaca 145  Q
    || |||||||||||||||| |||||||||||||||    
T  27527912 cgtcggtcacgattgtgaatttttgggtcgtgaca 27527946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 33063677 - 33063810
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| |||||||||||||||  || ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| | || ||||||||||     
T  33063677 tggatatcattttaagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagtgtcgtcaataggcttgccggactagggtgctctagttcgta 33063776  T
Q  112 cgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    ||||||||| |||  |||||||||||||||||||    
T  33063777 cgccggtcatgatattgaattttgggtcgtgaca 33063810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 37 - 136
Target Start/End: Complemental strand, 15970060 - 15969961
Alignment:
Q  37 atttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgg 136  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||| |||||| | ||| ||||||||| |||||||||||||||||||||||||||||||    
T  15970060 atttgaaaattgtttaaattatagtttgtcaagtgtcgtcattagacttgccgggctacgatgttctatttcgtgcgccggtcacgattgtgaattttgg 15969961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 28041304 - 28041408
Alignment:
Q  40 tgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgggtc 139  Q
    ||||||||||||||||||||||| |  |||||||||||||| |||| ||  |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28041304 tgaaaattgtttaaattatagtt-gccaagtgtcgtcaataagcttaccgaactaggatgttctagttcgtgcgccggtcacgattgtgaattttgggtc 28041402  T
Q  140 gtgaca 145  Q
    ||||||    
T  28041403 gtgaca 28041408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 33056197 - 33056334
Alignment:
Q  11 atggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagt---gtcgtcaataggcttgccagactatgatgttctagtt 107  Q
    ||||| |||||||||||||||  || |||| |||||||||||||||||||||||| ||||   ||||||||||||||| || ||||| | |  |||||||    
T  33056197 atggatatcattttaagtgaaagtcaatttaaaaattgtttaaattatagtttgtcaagtgtcgtcgtcaataggcttaccggactagggtactctagtt 33056296  T
Q  108 cgtgcgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    |||||||||||||||||  ||||||||||||| |||||    
T  33056297 cgtgcgccggtcacgatattgaattttgggtcttgaca 33056334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 25477742 - 25477665
Alignment:
Q  67 aagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  25477742 aagtgtcgtcaataggcttgccggactaggatgttctagttcgtgcgccggttacgattgtgaa-tttgggtcgtgaca 25477665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 30130911 - 30131015
Alignment:
Q  19 cattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccggt 118  Q
    |||| ||||||||  || ||||||||||||||||||||||||||||| ||| ||||||||||||||| || ||||| || | |||||||||||||||| |    
T  30130911 cattataagtgaaagtcaatttgaaaattgtttaaattatagtttgtcaagggtcgtcaataggctttccggactaggaagctctagttcgtgcgccgat 30131010  T
Q  119 cacga 123  Q
    |||||    
T  30131011 cacga 30131015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 6952798 - 6952903
Alignment:
Q  37 atttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgg 136  Q
    |||| |||||||||||||||||||||||  |||||||||||||| ||||| || |||| | |||||||||| |||| ||||||| |||| | ||||||||    
T  6952798 atttaaaaattgtttaaattatagtttgccaagtgtcgtcaataagcttgtcatactaggttgttctagtttgtgcaccggtcaggattttaaattttgg 6952897  T
Q  137 gtcgtg 142  Q
    ||||||    
T  6952898 gtcgtg 6952903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 22014634 - 22014702
Alignment:
Q  77 aataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    |||||||||||| | |||  ||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  22014634 aataggcttgccgggctagaatgatctagttcgtgcgccggtcacgatattgaattttgggtcgtgaca 22014702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 5447182 - 5447124
Alignment:
Q  191 tcttccaacttgtcaatctttgaacaaccagataatacaagagttttcaaagatttcaa 249  Q
    ||||||| ||||||||||||| |||||||||| |  || ||||||||||||||||||||    
T  5447182 tcttccaccttgtcaatctttaaacaaccagaaagaacgagagttttcaaagatttcaa 5447124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 5447633 - 5447554
Alignment:
Q  170 gattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccagataatacaagagttttcaaagatttcaa 249  Q
    |||||||||||  ||||  | ||||||| ||||||||||||| |||||||||| |  |  ||||||||||||||||||||    
T  5447633 gattccatctgttccaagtcctcttccagcttgtcaatctttaaacaaccagaaagaatgagagttttcaaagatttcaa 5447554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 14011684 - 14011734
Alignment:
Q  75 tcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgatt 125  Q
    |||||||||||||| | |||  |||||||||||||||||||| ||||||||    
T  14011684 tcaataggcttgccgggctagaatgttctagttcgtgcgccgatcacgatt 14011734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 5179608 - 5179535
Alignment:
Q  149 ttagcaatcagggttgtcaaggattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccaga 222  Q
    |||||||||||||| || ||||||||||| |   ||||  | ||||||||||||| |||||||||||| |||||    
T  5179608 ttagcaatcagggtcgttaaggattccatttcttccaagtcctcttccaacttgttaatctttgaacacccaga 5179535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 115391 - 115263
Alignment:
Q  17 atcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccg 116  Q
    |||||||||||||||  || ||||||||||||||||||||||||| ||| ||||||||||||||| |||||| || || ||| |||||||||||||||||    
T  115391 atcattttaagtgaaaatcaatttgaaaattgtttaaattatagtgtgtcaagtgtcgtcaatagacttgcctgattaggatattctagttcgtgcgccg 115292  T
Q  117 gtcacgattgtgaattttgggtcgtgaca 145  Q
     ||| ||||||||||||||||||||||||    
T  115291 atcatgattgtgaattttgggtcgtgaca 115263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 1277 - 1412
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| ||||||||||||| |  || ||||||||||| ||||||||||||||||| |||||| |||| ||||||| || ||||| ||||||||||||||||    
T  1277 tggatatcattttaagtgtaagtcaatttgaaaattatttaaattatagtttgtcaagtgttgtcattaggctttccggactaggatgttctagttcgtg 1376  T
Q  112 cgccggtcacgattgtgaa-ttttgggtcgtgacac 146  Q
    ||||||||||||||||||| |||||||| |||||||    
T  1377 cgccggtcacgattgtgaatttttgggttgtgacac 1412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 28104380 - 28104515
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| |||||||||||||||  || |||||||| || | ||||||||||||||| ||||||||||| |||||||||| ||||| ||||||||||||| ||    
T  28104380 tggatatcattttaagtgaaagtcaatttgaaatttatctaaattatagtttgtcaagtgtcgtcattaggcttgccggactaggatgttctagttcatg 28104479  T
Q  112 cgccggtcacgattgtgaa-ttttgggtcgtgacac 146  Q
    |||||||||||| |||||| ||||||||||||||||    
T  28104480 cgccggtcacgaatgtgaatttttgggtcgtgacac 28104515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 5705193 - 5705065
Alignment:
Q  17 atcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccg 116  Q
    |||||| ||||||||  ||  |||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| |||||  ||||||| ||||||    
T  5705193 atcattctaagtgaaagtcagtttgaaaattgtttaaattatagtttgtcaagggtcgtcaataggcttgccggactaggatgtcttagttcgagcgccg 5705094  T
Q  117 gtcacgattgtgaattttgggtcgtgaca 145  Q
    ||||||||  |||||||||||||||||||    
T  5705093 gtcacgatattgaattttgggtcgtgaca 5705065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 7688533 - 7688425
Alignment:
Q  37 atttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgg 136  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| |||| |||||||||||||||||||||||   |||||||| |    
T  7688533 atttgaaaattgtttaaattatagtttgtcaagggtcgtcaataggcttgccggactaggatgctctagttcgtgcgccggtcacgaaattgaattttag 7688434  T
Q  137 gtcgtgaca 145  Q
    |||||||||    
T  7688433 gtcgtgaca 7688425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 19435605 - 19435710
Alignment:
Q  39 ttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgggt 138  Q
    |||||||||||||||||||||||| || ||||||||||||||| |||| | || ||  ||||||||||||||||||||||||||||||||||||||||||    
T  19435605 ttgaaaattgtttaaattatagtt-gtcaagtgtcgtcaatagacttgtcggattagaatgttctagttcgtgcgccggtcacgattgtgaattttgggt 19435703  T
Q  139 cgtgaca 145  Q
    |||||||    
T  19435704 cgtgaca 19435710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 28058143 - 28058008
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| |||||||||||||||  |  |||||||| || | ||||||||||||||| || ||| || | |||||||||| ||||| ||||||||||||||||    
T  28058143 tggatatcattttaagtgaaagtaaatttgaaatttatctaaattatagtttgtcaactgttgttattaggcttgccggactaggatgttctagttcgtg 28058044  T
Q  112 cgccggtcacgattgtgaa-ttttgggtcgtgacac 146  Q
    |||||||||| | |||||| ||||||||||||||||    
T  28058043 cgccggtcacaaatgtgaatttttgggtcgtgacac 28058008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 28068568 - 28068433
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| |||||||||||||||  |  |||||||| || | ||||||||||||||| || ||| || | |||||||||| ||||| ||||||||||||||||    
T  28068568 tggatatcattttaagtgaaagtaaatttgaaatttatctaaattatagtttgtcaactgttgttattaggcttgccggactaggatgttctagttcgtg 28068469  T
Q  112 cgccggtcacgattgtgaa-ttttgggtcgtgacac 146  Q
    |||||||||| | |||||| ||||||||||||||||    
T  28068468 cgccggtcacaaatgtgaatttttgggtcgtgacac 28068433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 300
Target Start/End: Original strand, 32411215 - 32411365
Alignment:
Q  147 ctttagcaatcagggttgtcaaggattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccagataatacaagagttttcaaagattt 246  Q
    |||| |||||||| |||||||| |||||||| ||| | |    ||||||||| || |||||||||||||||||||| |  |  |||||||||||||||||    
T  32411215 cttttgcaatcagtgttgtcaacgattccatttgcactat---ttcttccaagttttcaatctttgaacaaccagaaaggatgagagttttcaaagattt 32411311  T
Q  247 caattgaaagatctaccctggaagatttctaagacttgctcagtccttcaaatt 300  Q
    ||||||| | |||| |  ||| ||| |  |||||||||  ||||||||||||||    
T  32411312 caattgatatatcttctttgggagactgttaagacttgtacagtccttcaaatt 32411365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 300
Target Start/End: Original strand, 6905952 - 6906091
Alignment:
Q  161 gttgtcaaggattccatctgccccaaaccttcttccaacttgtcaatctttgaacaaccagataatacaagagttttcaaagatttcaattgaaagatct 260  Q
    ||||||||||||| ||| ||| | | | |||| ||||| ||||||||||||||||||||| | |  |  |||||||||| |||| |||  ||| ||||||    
T  6905952 gttgtcaaggatttcatttgcactatatcttcctccaatttgtcaatctttgaacaaccaaaaagaatgagagttttcacagatatcagctgatagatct 6906051  T
Q  261 accctggaagatttctaagacttgctcagtccttcaaatt 300  Q
     || ||| ||||| | ||||||||  ||||||||||||||    
T  6906052 cccttggtagattgccaagacttgtacagtccttcaaatt 6906091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 11201241 - 11201290
Alignment:
Q  76 caataggcttgccagactatgatgttctagttcgtgcgccggtcacgatt 125  Q
    ||||||||||||| | |||  |||||||||||||||||||| ||||||||    
T  11201241 caataggcttgccgggctagaatgttctagttcgtgcgccgatcacgatt 11201290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 4091 - 3958
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| |||||||| ||||||  || |||| |||||||||||||||||||| ||  ||||||||| ||||| |||||| ||||| ||||||||||||||||    
T  4091 tggatatcattttcagtgaaaatcaatttaaaaattgtttaaattatagtgtgccaagtgtcgttaatagacttgcctgactaggatgttctagttcgtg 3992  T
Q  112 cgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    ||||| |||| |||||||||||||||||||||||    
T  3991 cgccgatcactattgtgaattttgggtcgtgaca 3958  T

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Target: scaffold0654; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 5445 - 5310
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattata--gtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcg 109  Q
    |||| |||||||| ||||||  || |||| ||||||||||||||||||  || ||| ||||||||||||||| |||||| ||||| ||||||||||||||    
T  5445 tggatatcattttcagtgaaaatcaatttaaaaattgtttaaattatatagtgtgtcaagtgtcgtcaatagacttgcctgactaggatgttctagttcg 5346  T
Q  110 tgcgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    ||||||| |||| |||||||||||||||||||||||    
T  5345 tgcgccgatcactattgtgaattttgggtcgtgaca 5310  T

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Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 28804121 - 28804254
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| |||||||||||||||   | |||| |||||||||||||||||||||||| ||||||| ||||||| |||||| ||||| |||| |||||||||||    
T  28804121 tggatatcattttaagtgaaaaacaatttaaaaattgtttaaattatagtttgtcaagtgtcatcaatagacttgccggactaggatgctctagttcgtg 28804220  T
Q  112 cgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    |||||||||||||  | |||||||||||||||||    
T  28804221 cgccggtcacgatattaaattttgggtcgtgaca 28804254  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 26525364 - 26525492
Alignment:
Q  17 atcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccg 116  Q
    ||||||||||||| |  || | ||||||| | || |||||||||||||| ||||||||||||||| |||| | | |||  | ||||||||||||||||||    
T  26525364 atcattttaagtggaagtcaaattgaaaaattttcaaattatagtttgtcaagtgtcgtcaatagacttgtcgggctagaaagttctagttcgtgcgccg 26525463  T
Q  117 gtcacgattgtgaattttgggtcgtgaca 145  Q
    ||||||||  |||||||| ||||||||||    
T  26525464 gtcacgatattgaatttttggtcgtgaca 26525492  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 36263778 - 36263728
Alignment:
Q  75 tcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgatt 125  Q
    |||||||||||||| | |||  |||||||||||||||||||||||||||||    
T  36263778 tcaataggcttgccgggctaaaatgttctagttcgtgcgccggtcacgatt 36263728  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 18057979 - 18058043
Alignment:
Q  82 gcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgacac 146  Q
    |||||||  |||| ||||| |||||||||||| |||| |||||||| | ||||||||||||||||    
T  18057979 gcttgccgaactaagatgtactagttcgtgcgtcggttacgattgtaatttttgggtcgtgacac 18058043  T

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Target: scaffold0002 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 406586 - 406455
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| |||||||||||||||  || |||| |||||| ||||||||||||||||| |||| ||||||||||| ||  | ||| | ||||||||||||||||    
T  406586 tggatatcattttaagtgaaagtcaatttaaaaattatttaaattatagtttgtcaagtttcgtcaataggttttactgacaaggatgttctagttcgtg 406487  T
Q  112 cgccggtcacgattgtgaattttgggtcgtga 143  Q
    ||||| |||||||| |||||||||||||||||    
T  406486 cgccgatcacgattttgaattttgggtcgtga 406455  T

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Target: scaffold0002; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 10306 - 10398
Alignment:
Q  53 aattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgaca 145  Q
    ||||||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||||  | |||||||||||||||||    
T  10306 aattatagtttgtcaagtgtcatcaataggcttgccggactaggatgctctagttcgtgcgccggtcacgatattaaattttgggtcgtgaca 10398  T

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Target: scaffold0002; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 423957 - 423827
Alignment:
Q  12 tggacatcattttaagtgaatttcgatttgaaaattgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtg 111  Q
    |||| |||||||||||||||  || |||| |||||||||||||| ||||||||| |||| ||||||||||  ||  | |||||  ||||| ||||| |||    
T  423957 tggatatcattttaagtgaaaatcaatttaaaaattgtttaaat-atagtttgtcaagtttcgtcaatagatttttcggactagaatgttttagtttgtg 423859  T
Q  112 cgccggtcacgattgtgaattttgggtcgtga 143  Q
    | ||| |||| |||||||||||||||||||||    
T  423858 caccgatcacaattgtgaattttgggtcgtga 423827  T

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Target: scaffold0012 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 233138 - 233048
Alignment:
Q  61 tttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgacaccttta 151  Q
    ||||| |||||| |||||||| ||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  233138 tttgtcaagtgttgtcaatagacttgccgaactaggatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgacaccttta 233048  T

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Target: scaffold0406 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 4129 - 4227
Alignment:
Q  45 attgtttaaattatagtttgttaagtgtcgtcaataggcttgccagactatgatgttctagttcgtgcgccggtcacgattgtgaattttgggtcgtgac 144  Q
    |||||||||||||||||| |  |||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4129 attgtttaaattatagtt-gccaagtgtcgtcaataggcttgctggactaggatgttctagttcgtgcgccggtcacgattgtgaa-tttgggtcgtgac 4226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 300
Target Start/End: Original strand, 6320 - 6431
Alignment:
Q  189 cttcttccaacttgtcaatctttgaacaaccagataatacaagagttttcaaagatttcaattgaaagatctaccctggaagatttctaagacttgctca 288  Q
    |||||||||| ||||| ||||||||||||||| | |  | ||||||||||| |||| |||  ||| |||||| || ||| ||||| | ||||||||  ||    
T  6320 cttcttccaatttgtcgatctttgaacaaccaaaaaggataagagttttcacagatatcagctgatagatctcccttggtagattgccaagacttgtaca 6419  T
Q  289 gtccttcaaatt 300  Q
     |||||||||||    
T  6420 atccttcaaatt 6431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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