View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085_1D_low_19 (Length: 298)
Name: NF2085_1D_low_19
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 5 - 280
Target Start/End: Original strand, 43410716 - 43410998
Alignment:
| Q |
5 |
tttagagatttgcagcttgagattgcaaggcgatttaacctaacagatatgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgt |
104 |
Q |
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| T |
43410716 |
tttagagatttgcagcttgagattgcaaggcgatttaacctaacagatatgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgt |
43410815 |
T |
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| Q |
105 |
tatcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcatctcacacacgtaccattagactctctctttttcaagcttcccctctcaatct |
204 |
Q |
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| T |
43410816 |
tatcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcatctcacacacgtaccattagactctctctttttcaagcttcccctctcaatct |
43410915 |
T |
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| Q |
205 |
tccaaacactttccgcaacagcagcagcagcagtccatcctcctag----ctagcttacaacttc---tcatctgaatgtgtt |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
43410916 |
tccaaacactttccgcaacagcagcagcagcagtccatcctcctagctagctagcttacaacttctgatcatctgaatgtgtt |
43410998 |
T |
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