View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085_1D_low_20 (Length: 295)
Name: NF2085_1D_low_20
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_low_20 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 24491644 - 24491863
Alignment:
| Q |
1 |
gcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24491644 |
gcttttaaattaagagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacactgtaattgattagagaaagtca |
24491743 |
T |
|
| Q |
101 |
aaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24491744 |
aaccatagctgtaggaagcaattattaggacaacaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattcctt |
24491843 |
T |
|
| Q |
201 |
acatatcattattccttata |
220 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
24491844 |
acatatcattattccttata |
24491863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 24495202 - 24495421
Alignment:
| Q |
1 |
gcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495202 |
gcttttaaattaagagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacactgtaattgattagagaaagtca |
24495301 |
T |
|
| Q |
101 |
aaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495302 |
aaccatagctgtaggaagcaattattaggacaacaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattcctt |
24495401 |
T |
|
| Q |
201 |
acatatcattattccttata |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
24495402 |
acatatcattattccttata |
24495421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 27 - 172
Target Start/End: Original strand, 2810226 - 2810371
Alignment:
| Q |
27 |
tattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattatt |
126 |
Q |
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|||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2810226 |
tattaagcattttagacgagagttattctgtgattaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctctaggaagcaattatt |
2810325 |
T |
|
| Q |
127 |
aggacagcaaatatgtttctatatattgtgccaatataccttgtga |
172 |
Q |
| |
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|||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
2810326 |
aggacaacaaatatgtttctatatattgtaccaatataccttgtga |
2810371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 24358957 - 24359176
Alignment:
| Q |
1 |
gcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24358957 |
gcttttaaattaagagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacactgtaattgattagagaaagtca |
24359056 |
T |
|
| Q |
101 |
aaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattcctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24359057 |
aaccatagctgtaggaagcaattattaggacaacaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattcctt |
24359156 |
T |
|
| Q |
201 |
acatatcattattccttata |
220 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
24359157 |
acatatcattattccttata |
24359176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 27 - 221
Target Start/End: Original strand, 86729 - 86922
Alignment:
| Q |
27 |
tattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattatt |
126 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
86729 |
tattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattatt |
86828 |
T |
|
| Q |
127 |
aggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttatac |
221 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
86829 |
aggacagcaaatatgtttctatatattgtgccaaaataccttgtgaatgatatagc-aaaaatcattattccttatatatcattattccttatac |
86922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 18556790 - 18556573
Alignment:
| Q |
1 |
gcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtca |
100 |
Q |
| |
|
||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
18556790 |
gcttttaaattaagagatattc-tagtattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactataattgactagagaaagtca |
18556692 |
T |
|
| Q |
101 |
aaccatagctgtaggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattcctt |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
18556691 |
aaccatagctggaggaagcaattattaggacagcaaatatgtttctatatattgtaccaatataccttgtgaatgatatagca-aaaatcattattccat |
18556593 |
T |
|
| Q |
201 |
acatatcattattccttata |
220 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
18556592 |
acatatcattattccttata |
18556573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 221 - 292
Target Start/End: Original strand, 22684888 - 22684959
Alignment:
| Q |
221 |
cttacagttgtccaaattgctatctgtgatgcatataactttttgggcatgtttaaggtaaactgggattca |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22684888 |
cttacagttgtccaaattgctatctgtgatgcatataactctttgggcatgtttaaggtaaactgggattca |
22684959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 221 - 295
Target Start/End: Original strand, 22697011 - 22697085
Alignment:
| Q |
221 |
cttacagttgtccaaattgctatctgtgatgcatataactttttgggcatgtttaaggtaaactgggattcagtt |
295 |
Q |
| |
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||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22697011 |
cttacagttgtccaagttgctatctttgatgcatataactctttgggcatgtttaaggtaaactgggattcagtt |
22697085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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