View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2085_1D_low_23 (Length: 275)
Name: NF2085_1D_low_23
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_low_23 |
 | |
|
| [»] chr3 (5 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr1 (7 HSPs) |
| |
|
| [»] chr2 (11 HSPs) |
| |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 11897400 - 11897126
Alignment:
| Q |
1 |
tcatctgcaaataagagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggccgactgctgagttcatagcagctgaaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
11897400 |
tcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagctgaaa |
11897301 |
T |
|
| Q |
101 |
gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11897300 |
gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaag |
11897201 |
T |
|
| Q |
201 |
tatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggag |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11897200 |
tatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggag |
11897126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 26432593 - 26432867
Alignment:
| Q |
1 |
tcatctgcaaataagagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggccgactgctgagttcatagcagctgaaa |
100 |
Q |
| |
|
|||| |||||| | ||| ||||||||||||||||||||||| |||||||| || ||| |||||||||||||| ||| || ||||| |||||||| || | |
|
|
| T |
26432593 |
tcatttgcaaaaaggaggtgggataaatgcggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagcggata |
26432692 |
T |
|
| Q |
101 |
gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaag |
200 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||||||| |
|
|
| T |
26432693 |
gcttttccatgcaaatgatgaagagataaggggacaatggatcaccttgtcggagaccatgagaaggtttgaaagacggcaacttgttcccattccaaag |
26432792 |
T |
|
| Q |
201 |
tatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggag |
275 |
Q |
| |
|
||||||||| | | |||| || |||||||||||||| ||||||||||||| ||||| |||||||||||||| |
|
|
| T |
26432793 |
tatagagtagtttgatgaagagacacaatgcatgatgagtttgatggtgatgtctggaaacccaaaatcatggag |
26432867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 272
Target Start/End: Original strand, 38647179 - 38647351
Alignment:
| Q |
100 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa |
199 |
Q |
| |
|
|||||||||||||| | ||||| || || || || | |||||||||||||| ||| || || |||||||| ||||| |||| || || |||||||||| |
|
|
| T |
38647179 |
agcttttccatgcataaaatgaagaggtagggagagagcggatcaccttgtctgagaccgtgggaaggcttaaaagggggcattttattaccgttccaaa |
38647278 |
T |
|
| Q |
200 |
gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatg |
272 |
Q |
| |
|
| |||||| | | | || | || |||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
38647279 |
gaatagagaaggtggatgatgaaacacaatgcatgatgagcttgatggtgatgtctggaaaaccaaaatcatg |
38647351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 266
Target Start/End: Complemental strand, 23424654 - 23424485
Alignment:
| Q |
97 |
gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc |
196 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| | ||||||||||| |||| ||||| || |||| |
|
|
| T |
23424654 |
gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttacctttcc |
23424555 |
T |
|
| Q |
197 |
aaagtatagagtaactaggagaagct-acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaa |
266 |
Q |
| |
|
| | ||| ||| || |||| || | || ||||| |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
23424554 |
ataatattgag-aatgtggaggaggtgacacaatgtatgatgagcttgatggtgatgtctggaaaaccaaa |
23424485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 49149802 - 49149851
Alignment:
| Q |
139 |
ggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgtt |
188 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||||| ||||||| ||||| |
|
|
| T |
49149802 |
ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgtt |
49149851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 23132480 - 23132754
Alignment:
| Q |
1 |
tcatctgcaaataagagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggccgactgctgagttcatagcagctgaaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
23132480 |
tcatctgcaaataggagatgggataaatggggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaa |
23132579 |
T |
|
| Q |
101 |
gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23132580 |
gcttttccatgcaaaggatgaaaagataaggggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaag |
23132679 |
T |
|
| Q |
201 |
tatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggag |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23132680 |
tatagagtaactaggagaagctacgcaatgcatgatgaacttgatggtgatgttcggaaatccaaaatcatggag |
23132754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 272
Target Start/End: Complemental strand, 26587380 - 26587205
Alignment:
| Q |
97 |
gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc |
196 |
Q |
| |
|
||||| || ||||| ||||| ||||| || || || ||||| || |||||||||||||||||||||| ||||||||| || ||||| ||||| || || | |
|
|
| T |
26587380 |
gaaagtttctccatacaaagaatgaagaggtagggagacaatgggtcaccttgtcggaggccatgagtaggcttgaaggggggcaatttgttaccatttc |
26587281 |
T |
|
| Q |
197 |
aaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatg |
272 |
Q |
| |
|
|||| || | | | ||| |||| ||||||||||||||||| ||||||| | || |||||||| |||||||| |
|
|
| T |
26587280 |
aaaggatggtgaaggtagatgaagtgacgcaatgcatgatgagtttgatggcggcgtcaggaaatccgaaatcatg |
26587205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 20285101 - 20284827
Alignment:
| Q |
1 |
tcatctgcaaataagagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggccgactgctgagttcatagcagctgaaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
20285101 |
tcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaa |
20285002 |
T |
|
| Q |
101 |
gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
20285001 |
gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttccaaag |
20284902 |
T |
|
| Q |
201 |
tatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggag |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20284901 |
tatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggag |
20284827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 88 - 275
Target Start/End: Original strand, 50236550 - 50236737
Alignment:
| Q |
88 |
atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgt |
187 |
Q |
| |
|
|||||| |||| || || ||||| || | ||||||||| |||||||| | ||||||||||| || ||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
50236550 |
atagcaactgatagtttctccatacacaagatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgt |
50236649 |
T |
|
| Q |
188 |
tcccgttccaaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggag |
275 |
Q |
| |
|
|||||||||| | |||||||| | || || | || |||||||||||||| ||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
50236650 |
tcccgttccataagatagagtaggtgggtgaggagacacaatgcatgatgagtttggtggtgatgtccggaaatccaaaatcatggag |
50236737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 272
Target Start/End: Complemental strand, 50452048 - 50451876
Alignment:
| Q |
100 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa |
199 |
Q |
| |
|
||||| ||||| ||||| ||||| || ||||| || | |||||||||||||||||||||||| | ||| |||||| |||||| ||||| || ||||| | |
|
|
| T |
50452048 |
agcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattccata |
50451949 |
T |
|
| Q |
200 |
gtatagagtaactaggagaagct-acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatg |
272 |
Q |
| |
|
|||||| || | |||| || | || ||||||||||| || ||||||||||||| |||||| ||||| ||||| |
|
|
| T |
50451948 |
agatagagaaagt-ggaggaggtgacacaatgcatgataagtttgatggtgatgtccggaaaaccaaactcatg |
50451876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 5193219 - 5193268
Alignment:
| Q |
226 |
caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggag |
275 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
5193219 |
caatgcatgataagcttgatggtgatgttcgtaaatccaaaatcaaggag |
5193268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 23465461 - 23465403
Alignment:
| Q |
139 |
ggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcca |
197 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||||| ||||||| ||||| || ||||| |
|
|
| T |
23465461 |
ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgttaccattcca |
23465403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 1525078 - 1524969
Alignment:
| Q |
142 |
tcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaactaggagaagctacgcaatgcatgatgagct |
241 |
Q |
| |
|
|||||||| || || || || |||||||||||||| || || ||||| || |||||||| |||||| | |||||| | || |||||||||||||| | |
|
|
| T |
1525078 |
tcaccttgccgaagaccgtgggaaggcttgaaaggaggtaatttgttaccattccaaagaatagagaaggcaggagaggtaacacaatgcatgatgagtt |
1524979 |
T |
|
| Q |
242 |
tgatggtgat |
251 |
Q |
| |
|
|||||||||| |
|
|
| T |
1524978 |
tgatggtgat |
1524969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 43298385 - 43298341
Alignment:
| Q |
226 |
caatgcatgatgagcttgatggtgatgttcggaaatccaaaatca |
270 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||||||||| |
|
|
| T |
43298385 |
caatgcatgataagcttcatggtgatgttcgagaatccaaaatca |
43298341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 14653575 - 14653849
Alignment:
| Q |
1 |
tcatctgcaaataagagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggccgactgctgagttcatagcagctgaaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |||||||| || | |
|
|
| T |
14653575 |
tcatctgcaaataggagatgggataaatgcggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagcggata |
14653674 |
T |
|
| Q |
101 |
gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14653675 |
gcttttccatgcaaaggatgaaaaaataaggggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaag |
14653774 |
T |
|
| Q |
201 |
tatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggag |
275 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14653775 |
tatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgttaggaaatccaaaatcatggag |
14653849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 270
Target Start/End: Complemental strand, 26791471 - 26791301
Alignment:
| Q |
100 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa |
199 |
Q |
| |
|
||||| ||||||||||| || ||||| || ||||| | ||||||||| || | ||||||||||| ||||| |||||| |||||| | || || ||||||| |
|
|
| T |
26791471 |
agcttctccatgcaaagaataaaaaggtacggggaaagcggatcaccctgcctgaggccatgagtaggctcgaaaggaggcaacctatttccattccaaa |
26791372 |
T |
|
| Q |
200 |
gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatca |
270 |
Q |
| |
|
| |||||| | || | |||| ||||||||||||||||||||||||||| | | ||| || ||||||||| |
|
|
| T |
26791371 |
gaatagagaagctggatgaagtaacgcaatgcatgatgagcttgatggtggtatccgggaagccaaaatca |
26791301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 253
Target Start/End: Original strand, 35135219 - 35135369
Alignment:
| Q |
103 |
ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagta |
202 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||||| |||||||||||| | | |||||| || ||||| | | |
|
|
| T |
35135219 |
ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataaaa |
35135318 |
T |
|
| Q |
203 |
tagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt |
253 |
Q |
| |
|
| ||||| || || || | || |||||||||||||| |||||||| |||| |
|
|
| T |
35135319 |
ttgagtagcttggtgaggtaacacaatgcatgatgagtttgatggtaatgt |
35135369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 253
Target Start/End: Complemental strand, 40328325 - 40328175
Alignment:
| Q |
103 |
ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagta |
202 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||||| |||||||||||| | | |||||| || ||||| | | |
|
|
| T |
40328325 |
ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagaaagcttgtttccattccataaaa |
40328226 |
T |
|
| Q |
203 |
tagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt |
253 |
Q |
| |
|
| ||||| || || || | || |||||||||||||| |||||||| |||| |
|
|
| T |
40328225 |
ttgagtagctcggtgaggtaacacaatgcatgatgagtttgatggtaatgt |
40328175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 16322611 - 16322502
Alignment:
| Q |
88 |
atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgt |
187 |
Q |
| |
|
|||||| | ||||| |||||||||||||| |||||||| || || || | ||| ||||||||||| |||||||||| ||||||||||| |||| ||||| |
|
|
| T |
16322611 |
atagcaacagaaagtttttccatgcaaagtatgaaaaggtacggagaaagcgggtcaccttgtcgaaggccatgagtgggcttgaaaggaggcatcttgt |
16322512 |
T |
|
| Q |
188 |
tcccgttcca |
197 |
Q |
| |
|
| || ||||| |
|
|
| T |
16322511 |
ttccattcca |
16322502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 3779048 - 3779121
Alignment:
| Q |
103 |
ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg |
176 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||| ||| |||||||| || || ||||||| |||||||||||| |
|
|
| T |
3779048 |
ttttccatacagaggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaagg |
3779121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 573342 - 573266
Alignment:
| Q |
100 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg |
176 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| || | |||||||||||||| ||||||||| ||||| || ||||| |
|
|
| T |
573342 |
agcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggccatgggaaggtttaaaagg |
573266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 42403209 - 42403295
Alignment:
| Q |
95 |
ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca |
181 |
Q |
| |
|
||||||||||||||||||| || || || |||||||| || | || |||||||| ||||||||||||| ||||||||||| |||| |
|
|
| T |
42403209 |
ctgaaagcttttccatgcacagtataaatagataaggtgagagagggtcaccttgccggaggccatgagtgggcttgaaaggaggca |
42403295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 245
Target Start/End: Complemental strand, 177649 - 177504
Alignment:
| Q |
100 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa |
199 |
Q |
| |
|
|||||||||||||| | |||||| || ||||| ||||| || |||||||||| || ||||||| |||||||| ||| ||| | ||||| || ||||||| |
|
|
| T |
177649 |
agcttttccatgcagatgatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggcttgataggaggccatttgtttccattccaaa |
177550 |
T |
|
| Q |
200 |
gtatagagtaactaggagaagctacgcaatgcatgatgagcttgat |
245 |
Q |
| |
|
| | |||| | | | ||||| || |||||||||||||| ||||| |
|
|
| T |
177549 |
gaacagagaatgttgaagaagtgacacaatgcatgatgagtttgat |
177504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 19265551 - 19265490
Alignment:
| Q |
115 |
aggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg |
176 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||| || || ||||||| |||||||||||| |
|
|
| T |
19265551 |
aggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaagg |
19265490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 35062956 - 35063007
Alignment:
| Q |
100 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtc |
151 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| | ||||||||||||| |
|
|
| T |
35062956 |
agcttttccatacaaaggatgaaaagatagggggatagtggatcaccttgtc |
35063007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 190
Target Start/End: Complemental strand, 76057 - 75967
Alignment:
| Q |
100 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcc |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||||| ||||||||| | |||| |||||||| |
|
|
| T |
76057 |
agcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtctgagaccatgagtaggcttgaaggaaggcagcttgttcc |
75967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 206
Target Start/End: Original strand, 32874457 - 32874563
Alignment:
| Q |
100 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa |
199 |
Q |
| |
|
|||||||||||||||| |||||| | ||| || || | ||| || ||||| |||||||||||||||||||||||||| |||||||||||||| || |||| |
|
|
| T |
32874457 |
agcttttccatgcaaatgatgaataaatagggagagagcgggtctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatttcaaa |
32874556 |
T |
|
| Q |
200 |
gtataga |
206 |
Q |
| |
|
| ||||| |
|
|
| T |
32874557 |
ggataga |
32874563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 275
Target Start/End: Complemental strand, 7817285 - 7817110
Alignment:
| Q |
100 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa |
199 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| || || || ||||| |||| ||| ||||||| ||||||||||| || | |||||||| ||||| | |
|
|
| T |
7817285 |
agcttttccatgcaaagaatgaaaaggtaaggagataaagggtcaccctgtctgagaccatgagtaggcttgaaagaaggaagtttgttcccattccata |
7817186 |
T |
|
| Q |
200 |
gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggag |
275 |
Q |
| |
|
|||||||| | | || | ||| |||||||||||||||||||| ||||||| || || |||||||||||||| |
|
|
| T |
7817185 |
aaatagagtagttggaggatgatacacaatgcatgatgagcttgattgtgatgtcagggaaaccaaaatcatggag |
7817110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 275
Target Start/End: Original strand, 6641008 - 6641188
Alignment:
| Q |
95 |
ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgtt |
194 |
Q |
| |
|
||||||| ||||||||||| | ||||| || || || || | ||||||||||| |||||||||||||| ||||||||||| | || ||||| ||||| |
|
|
| T |
6641008 |
ctgaaagtttttccatgcacataatgaagaggtagggagagagcggatcaccttttcggaggccatgagtgggcttgaaaggggacattttgtttccgtt |
6641107 |
T |
|
| Q |
195 |
ccaaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggag |
275 |
Q |
| |
|
||| | | ||||||| | | || | || |||| |||||| |||||||| ||||| | |||||| ||||| |||||||| |
|
|
| T |
6641108 |
ccataagagagagtaagtggctgaggagacacaatacatgataagcttgattgtgatatccggaaaaccaaagtcatggag |
6641188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 253
Target Start/End: Original strand, 54477407 - 54477557
Alignment:
| Q |
103 |
ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagta |
202 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||||||||| || || ||||| | ||||||||||| || | |||||| || |||||||| | |
|
|
| T |
54477407 |
ttttccatgcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagcttgtttccattccaaagga |
54477506 |
T |
|
| Q |
203 |
tagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt |
253 |
Q |
| |
|
|| |||| | | || | || |||||||||||||||||||||||||||| |
|
|
| T |
54477507 |
taaagtattttgatgatgaaacacaatgcatgatgagcttgatggtgatgt |
54477557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 272
Target Start/End: Original strand, 46784469 - 46784644
Alignment:
| Q |
97 |
gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc |
196 |
Q |
| |
|
||||| |||| ||||||||||||||| || || || || | ||||||||||||| |||||||||| ||| |||||||||||||| || || || |||| |
|
|
| T |
46784469 |
gaaagttttttcatgcaaaggatgaagaggtagggagatagaggatcaccttgtctaaggccatgagtaggtttgaaaggcggcaatttatttccattcc |
46784568 |
T |
|
| Q |
197 |
aaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatg |
272 |
Q |
| |
|
|||| | ||| || | | || | || |||||||||||||||||||||||| | | ||||| ||||||||||| |
|
|
| T |
46784569 |
aaaggacggagaaagttgatgacgtaacacaatgcatgatgagcttgatggtggcgctaggaaacccaaaatcatg |
46784644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 3881868 - 3881787
Alignment:
| Q |
100 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca |
181 |
Q |
| |
|
||||||||||| ||||| ||||| || ||| | || | |||||||||||||||||||||||| | ||| |||||| |||||| |
|
|
| T |
3881868 |
agcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggca |
3881787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 266
Target Start/End: Original strand, 24893833 - 24894002
Alignment:
| Q |
97 |
gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc |
196 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| | ||||||||||| |||| ||||| || |||| |
|
|
| T |
24893833 |
gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttaccattcc |
24893932 |
T |
|
| Q |
197 |
aaagtatagagtaactaggagaagct-acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaa |
266 |
Q |
| |
|
| | ||| ||| || |||| || | || |||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
24893933 |
ataatatggag-aatgtggaggaggtgacacaatgcatgatgagcttgatggtgatgtctggaaaaccaaa |
24894002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 24990660 - 24990832
Alignment:
| Q |
97 |
gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcc |
196 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| || | ||| |||||||||| ||| ||||| | ||||||||||| |||| ||||| ||||||| |
|
|
| T |
24990660 |
gaaagcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggcattttgttaccgttcc |
24990759 |
T |
|
| Q |
197 |
aaagtatagagtaactaggagaagct-acgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatc |
269 |
Q |
| |
|
| | ||||| || | |||| || | || || ||||||||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
24990760 |
ataaaatagaaaaagt-ggaggaggtgacacagtgcatgatgagtttgatggtgatgtctggaaaaccaaaatc |
24990832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 207
Target Start/End: Original strand, 27852952 - 27853059
Alignment:
| Q |
100 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa |
199 |
Q |
| |
|
||||||||||| ||||||||||| | ||||| || || || || ||||||| || ||||||||||||||||||| |||| ||||| |||||||||| |
|
|
| T |
27852952 |
agcttttccatacaaaggatgaataagtaaggagataaagggtccccttgtcttagaccatgagaaggcttgaaagaaggcattttgtttccgttccaaa |
27853051 |
T |
|
| Q |
200 |
gtatagag |
207 |
Q |
| |
|
| |||||| |
|
|
| T |
27853052 |
gaatagag |
27853059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 13599745 - 13599639
Alignment:
| Q |
91 |
gcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcc |
190 |
Q |
| |
|
||||||||||| |||||||| || | |||||| |||||||| || | ||||||||||| ||||| |||||| ||||||||| |||| |||||||| | |
|
|
| T |
13599745 |
gcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggagatcatgagtaggcttgaattgcggaaacttgttac |
13599646 |
T |
|
| Q |
191 |
cgttcca |
197 |
Q |
| |
|
| ||||| |
|
|
| T |
13599645 |
cattcca |
13599639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 32725587 - 32725636
Alignment:
| Q |
226 |
caatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatggag |
275 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||| ||| |||| |
|
|
| T |
32725587 |
caatgcatgataagcttgatggtgatgtccggaaatccaaactcaaggag |
32725636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 272
Target Start/End: Original strand, 16769956 - 16770134
Alignment:
| Q |
94 |
gctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgt |
193 |
Q |
| |
|
||||| || |||||||| || | |||||| |||||||| || | |||||||||||||| || ||||||| ||| |||||| ||||||| ||||| || | |
|
|
| T |
16769956 |
gctgagagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaatttgttaccat |
16770055 |
T |
|
| Q |
194 |
tccaaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgttcggaaatccaaaatcatg |
272 |
Q |
| |
|
|||| | |||||| || | | ||||| || || ||||| || || |||||||| |||| || |||||||||||||| |
|
|
| T |
16770056 |
tccataaaatagagaaagtggaagaagaaacacagtgcataataagtttgatggtaatgtctgggaatccaaaatcatg |
16770134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 27781628 - 27781727
Alignment:
| Q |
98 |
aaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcca |
197 |
Q |
| |
|
||||||| |||||||| |||||||| || ||||| || | || |||||||||| ||||||||||| ||||| || || |||| |||||||||||||| |
|
|
| T |
27781628 |
aaagcttctccatgcagaggatgaagaggtaaggtgaaagagggtcaccttgtctgaggccatgagttggcttaaatggaggcattttgttcccgttcca |
27781727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 1353794 - 1353864
Alignment:
| Q |
103 |
ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaa |
173 |
Q |
| |
|
|||||||| ||||| ||||||||||| || || | |||||||||||| ||||||||||| ||||||||| |
|
|
| T |
1353794 |
ttttccatacaaagaatgaaaagatatggtgagagtggatcaccttgtatgaggccatgagtaggcttgaa |
1353864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 245
Target Start/End: Original strand, 1579159 - 1579304
Alignment:
| Q |
100 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaa |
199 |
Q |
| |
|
||||||||||||||||| || || || |||||||| | ||||||||| |||| ||| ||||||| ||| | || || ||||||||||| | ||| | | |
|
|
| T |
1579159 |
agcttttccatgcaaagaataaagaggtaaggggagagcggatcaccctgtctgagcccatgagtaggatgaaagggaggcaacttgtttctattctaga |
1579258 |
T |
|
| Q |
200 |
gtatagagtaactaggagaagctacgcaatgcatgatgagcttgat |
245 |
Q |
| |
|
| |||||| || | | ||||| || |||||||||||||| ||||| |
|
|
| T |
1579259 |
gaatagagaaagttgaagaagaaacacaatgcatgatgagattgat |
1579304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University