View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085_1D_low_28 (Length: 257)
Name: NF2085_1D_low_28
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_low_28 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 5167024 - 5166797
Alignment:
| Q |
30 |
atttattttatttgttgtgattaagtttacaaattgtagtgataattgatatggattgatgtttgaacattgattttgttgtgctcattgtgaaggttgg |
129 |
Q |
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| T |
5167024 |
atttattttatttgttgtgattaagtttacaaattgtagtgataattgatatggattgatgtttgaacattgattttgttgtgctcattgtgaaggttgg |
5166925 |
T |
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| Q |
130 |
tattgaggagtgatttctattagcttcaatttcaaaaggaaaagattcatagtttttccccattttacaatttgattgctgtggaagatgttgtgcgctt |
229 |
Q |
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| T |
5166924 |
tattgaggagtgatttctattagcttcaatttcaaaaggaaaagattcatagtttttccccattttacaatttgattgctgtggaagatgttgtgcgctt |
5166825 |
T |
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| Q |
230 |
gttctggagagcaacacaaatttgaaga |
257 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
5166824 |
gttctggagagcaacacaaatttgaaga |
5166797 |
T |
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