View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2085_1D_low_29 (Length: 251)

Name: NF2085_1D_low_29
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2085_1D_low_29
NF2085_1D_low_29
[»] chr3 (8 HSPs)
chr3 (3-251)||(35695031-35695285)
chr3 (136-219)||(557578-557662)
chr3 (152-223)||(47720898-47720969)
chr3 (173-226)||(26373382-26373435)
chr3 (159-239)||(30498991-30499071)
chr3 (138-221)||(42433421-42433504)
chr3 (174-245)||(26482523-26482594)
chr3 (136-220)||(28541480-28541564)
[»] chr6 (3 HSPs)
chr6 (7-251)||(1717583-1717827)
chr6 (135-225)||(31750232-31750323)
chr6 (192-236)||(30625567-30625611)
[»] chr2 (9 HSPs)
chr2 (3-251)||(25221608-25221857)
chr2 (7-250)||(31055413-31055656)
chr2 (136-225)||(17303530-17303620)
chr2 (149-225)||(33050827-33050903)
chr2 (173-225)||(35658276-35658328)
chr2 (14-64)||(35658157-35658206)
chr2 (32-94)||(38001941-38002003)
chr2 (163-224)||(18481911-18481971)
chr2 (134-222)||(39711495-39711583)
[»] chr4 (9 HSPs)
chr4 (6-247)||(51267340-51267578)
chr4 (3-225)||(7784643-7784865)
chr4 (149-223)||(22065807-22065881)
chr4 (136-225)||(20626618-20626707)
chr4 (135-223)||(38011455-38011544)
chr4 (85-201)||(41322015-41322132)
chr4 (134-225)||(12328414-12328506)
chr4 (158-218)||(41421371-41421431)
chr4 (179-240)||(23096488-23096549)
[»] chr5 (6 HSPs)
chr5 (141-248)||(18012869-18012976)
chr5 (134-225)||(3925536-3925630)
chr5 (159-241)||(5215129-5215211)
chr5 (134-226)||(4157577-4157670)
chr5 (158-224)||(35078046-35078112)
chr5 (134-193)||(35193242-35193302)
[»] scaffold0042 (1 HSPs)
scaffold0042 (134-226)||(31132-31225)
[»] chr1 (6 HSPs)
chr1 (135-241)||(14635725-14635830)
chr1 (163-224)||(11871507-11871568)
chr1 (163-224)||(18628874-18628935)
chr1 (134-190)||(32365995-32366052)
chr1 (172-225)||(43031353-43031406)
chr1 (169-221)||(23043549-23043601)
[»] chr7 (2 HSPs)
chr7 (169-239)||(43574000-43574070)
chr7 (136-225)||(22575185-22575279)
[»] scaffold0445 (1 HSPs)
scaffold0445 (134-222)||(10393-10482)
[»] scaffold0174 (1 HSPs)
scaffold0174 (135-222)||(30744-30829)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 3 - 251
Target Start/End: Original strand, 35695031 - 35695285
Alignment:
Q  3 ttggtgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatgctttaggtccgcctccacaccggtac-----cgtcctt 97  Q
    |||||||||||||||||||| ||| |||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||     |||||||    
T  35695031 ttggtgttccttgcttgattctcttattcttccaggtctattgagatctgcagatcttgatgcttcaggtccgcctccacaccggtaccgtaccgtcctt 35695130  T
Q  98 ttatccgttgcagtgcgtctgattgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatctt-gtt 196  Q
    |||||||| | ||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| |||    
T  35695131 ttatccgtcgtagtccgtgtgattgttttcggagtgatgctcgaaagagctttatacctgctgctttgtttaggggattgctggtacgtggatcttagtt 35695230  T
Q  197 accgtgatgacggtcgatccattcgccaacctaaaacccttttttatcctactga 251  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35695231 gccgtgatgacggtcgatccattcgccaacctaaaacccctttttatcctactga 35695285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 557578 - 557662
Alignment:
Q  136 gctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccatt 219  Q
    ||||||||||||| ||||||||  || |||||| |||||||||||||||||||||||||| ||||||| || |||||||||||||    
T  557578 gctcgaaagagctattatacctgatgttttgttcagggggttgttggtacgtggatcttgataccgtgttggcggtcgatccatt 557662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 47720898 - 47720969
Alignment:
Q  152 tacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcc 223  Q
    ||||| ||| |||||| |||||||||||||||||||||||||| |||| || || |||||||||||||||||    
T  47720898 tacctgctgttttgttcagggggttgttggtacgtggatcttgataccttgttggcggtcgatccattcgcc 47720969  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 26373435 - 26373382
Alignment:
Q  173 ggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaac 226  Q
    ||||| |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  26373435 ggttgctggtacgtggatcttgataccgtgttgacggtcgatccattcgccaac 26373382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 30499071 - 30498991
Alignment:
Q  159 tgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaaccctttt 239  Q
    ||||||||| ||||||||| |||||| |||||||||  |||||| || |||||||||||||||||||  || |||||||||    
T  30499071 tgctttgttgagggggttgctggtacttggatcttgaaaccgtgttggcggtcgatccattcgccaatttataaccctttt 30498991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 42433504 - 42433421
Alignment:
Q  138 tcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcg 221  Q
    ||||||||||| |||||||| |||||||||| ||||| ||| |||||||||||||| | ||||||| || |||| ||||||||||    
T  42433504 tcgaaagagctattatacctgctgctttgttcagggg-ttgctggtacgtggatctcgataccgtgttggcggtggatccattcg 42433421  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 26482523 - 26482594
Alignment:
Q  174 gttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaacccttttttatcc 245  Q
    ||||||||||||||||||||| | || || || ||||||||||| ||| |||| || | |||||||||||||    
T  26482523 gttgttggtacgtggatcttgatgccatgttggcggtcgatccactcgtcaacttataccccttttttatcc 26482594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 28541564 - 28541480
Alignment:
Q  136 gctcgaaagagctt-tatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattc 220  Q
    |||||||||||||  ||| ||| || ||||||| ||||||||| |||||| ||||| ||| ||||||| || ||||||||||||||    
T  28541564 gctcgaaagagctcctatgcctgctactttgttcagggggttgatggtacatggat-ttgataccgtgttggcggtcgatccattc 28541480  T

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Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 1717827 - 1717583
Alignment:
Q  7 tgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatgctttaggtccgcctccacaccggtaccgtccttttatccgtt 106  Q
    |||||||||||||||| ||||||| || ||||||||||||||||||||||||| ||||| | ||| ||| || ||| ||||||| ||||| || || |||    
T  1717827 tgttccttgcttgattctctgattttttcaggtctgttgagatctgcaggtctcgatgcatcagggccgacttcactccggtacagtcctcttgtctgtt 1717728  T
Q  107 gcagtgcgtctgattgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatga 206  Q
    ||||| | | ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||  ||||||| ||||||||||| ||     
T  1717727 gcagtccttgtgattgttttcggagtgttgctcgaaagagctttatacctgctgctttgttcagggggttgctggatcgtggattttgttaccgtgctgg 1717628  T
Q  207 cggtcgatccattcgccaacctaaaacccttttttatcctactga 251  Q
    |||||||||||| ||||||  | ||||||  | ||||||||||||    
T  1717627 cggtcgatccatacgccaatattaaacccgctcttatcctactga 1717583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 31750232 - 31750323
Alignment:
Q  135 tgctcgaaagagct-ttatacctactgctttgtttaggggg-ttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 225  Q
    |||||||||||||| |||||||| ||||||| || |||||| ||| |||||||||||| ||||||||||| || |||||||||||||||||||    
T  31750232 tgctcgaaagagctattatacctgctgctttattcaggggggttgctggtacgtggat-ttgttaccgtgttggcggtcgatccattcgccaa 31750323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 30625611 - 30625567
Alignment:
Q  192 ttgttaccgtgatgacggtcgatccattcgccaacctaaaaccct 236  Q
    ||||||||||| || ||||||||||||||||||| || |||||||    
T  30625611 ttgttaccgtgttggcggtcgatccattcgccaaacttaaaccct 30625567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 3 - 251
Target Start/End: Original strand, 25221608 - 25221857
Alignment:
Q  3 ttggtgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatgctttaggtccgcctccacaccggtaccgtccttttatc 102  Q
    |||||||||||||||||||| ||||||  || ||||||||||||||| ||||||||||||||| | |||||||||| |||   ||||||||| | || ||    
T  25221608 ttggtgttccttgcttgattctctgatattttcaggtctgttgagatttgcaggtcttgatgcatcaggtccgccttcactatggtaccgtcttcttgtc 25221707  T
Q  103 cgttgcagtgcgtctgattgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtg 202  Q
    ||||||||| | | |||||||| ||||| || |||||||||||||||||||||| ||| |||||| ||||||||| ||| |||||||||||| |||| ||    
T  25221708 cgttgcagtccttgtgattgttctcggattgttgctcgaaagagctttatacctgctgatttgttcagggggttgctggaacgtggatcttggtaccatg 25221807  T
Q  203 atgacggtcgatccattcgccaacct-aaaacccttttttatcctactga 251  Q
     || |||||||||||| || ||| || |||||| |||| |||||||||||    
T  25221808 ctggcggtcgatccatacgtcaatctaaaaaccattttgtatcctactga 25221857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 31055413 - 31055656
Alignment:
Q  7 tgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatgctttaggtccgcctccacaccggtaccgtccttttatccgtt 106  Q
    ||||||| |||||||| ||||||  || ||||| ||||||||| |||||||||  |||| | |||||| ||| ||| ||||||||||| | || ||| ||    
T  31055413 tgttcctagcttgattctctgatattttcaggtttgttgagatatgcaggtctcaatgcatcaggtcctccttcactccggtaccgtcatcttgtccctt 31055512  T
Q  107 gcagtgcgtctgattgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatga 206  Q
    ||||| | | ||| |||| |||||||| |||||||||||||||||||||| ||||||| || ||||||||| |||  ||||||| ||||||||||| ||     
T  31055513 gcagtccttgtgagtgttctcggagtgttgctcgaaagagctttataccttctgcttttttcagggggttgctggaccgtggat-ttgttaccgtgttgg 31055611  T
Q  207 cggtcgatccattcgccaa-cctaaaacccttttttatcctactg 250  Q
    |||||||||||| |||||| | ||||||||| |||||| ||||||    
T  31055612 cggtcgatccatacgccaatcttaaaaccctcttttattctactg 31055656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 17303530 - 17303620
Alignment:
Q  136 gctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 225  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| | || |||| || |||| |||| |||||||||    
T  17303530 gctcgaaagagctattatacctgctgctttgttcagggggttgttggtacgtggatctcgatatcgtgttggcggtggatctattcgccaa 17303620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 33050903 - 33050827
Alignment:
Q  149 ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 225  Q
    |||||||| |||||||||| ||||| |   |||||||||||| | | ||||||| || |||||||||||||||||||    
T  33050903 ttatacctgctgctttgttcaggggatcactggtacgtggatttggataccgtgttggcggtcgatccattcgccaa 33050827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 35658276 - 35658328
Alignment:
Q  173 ggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 225  Q
    ||||| ||||||||||||| | |||||||| || |||||||||||||||||||    
T  35658276 ggttgctggtacgtggatcgttttaccgtgttggcggtcgatccattcgccaa 35658328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 35658157 - 35658206
Alignment:
Q  14 tgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatg 64  Q
    ||||||||| ||||||  ||||||||||||| |||||||||||||||||||    
T  35658157 tgcttgattctctgatg-ttccaggtctgtttagatctgcaggtcttgatg 35658206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 38001941 - 38002003
Alignment:
Q  32 ttccaggtctgttgagatctgcaggtcttgatgctttaggtccgcctccacaccggtaccgtc 94  Q
    ||||||||||||| ||||||||||||||  |||| | | ||| |||||||| |||||||||||    
T  38001941 ttccaggtctgtttagatctgcaggtctctatgcgtcaagtctgcctccactccggtaccgtc 38002003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 18481971 - 18481911
Alignment:
Q  163 ttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcca 224  Q
    |||||||||| |||||||| || ||||| | ||||||||| || ||||||||||||||||||    
T  18481971 ttgtttagggagttgttggcacttggat-tcgttaccgtgttggcggtcgatccattcgcca 18481911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 39711583 - 39711495
Alignment:
Q  134 atgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgc 222  Q
    ||||| ||||||| ||||| | | |||||||||| || | | |||||| || ||||| ||||||||||| || ||||| ||||||||||    
T  39711583 atgcttgaaagagttttatgcttgctgctttgttcagagagctgttggcacttggattttgttaccgtgttggcggtctatccattcgc 39711495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 51267340 - 51267578
Alignment:
Q  6 gtgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatgctttaggtccgcctccacaccggtaccgtccttttatccgt 105  Q
    ||||| ||||||||||| ||| ||  |||||||||| ||||||||||||||||| ||||| |||||||| |||  || |||||  ||||   || || ||    
T  51267340 gtgtttcttgcttgattctctaatatttccaggtctattgagatctgcaggtctcgatgcattaggtccaccttaactccggtgtcgtc---ttgtctgt 51267436  T
Q  106 tgcagtgcgtctgattgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatg 205  Q
    |||||| | | ||| |||| || ||||| ||||||||| |||||||||||| |||||||||| ||||||||| ||| |||||||| ||||||| ||| ||    
T  51267437 tgcagtccttgtgactgttctcagagtgttgctcgaaaaagctttatacctgctgctttgttcagggggttgctggaacgtggat-ttgttactgtgttg 51267535  T
Q  206 acggtcgatccattcgccaacct-aaaacccttttttatccta 247  Q
     | |||||||||| | |||| || |||||||||||||||||||    
T  51267536 gcagtcgatccatacaccaatctaaaaacccttttttatccta 51267578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 7784643 - 7784865
Alignment:
Q  3 ttggtgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatgctttaggtccgcctccacaccggtaccgtccttttatc 102  Q
    |||||||||||||||||||| ||||||  |||||| ||| ||||||||||||| ||| ||||| | ||| |||||| ||| |  ||||||||   || ||    
T  7784643 ttggtgttccttgcttgattctctgatatttccagctcttttgagatctgcagctctcgatgcatcaggcccgccttcactctagtaccgtctcattttc 7784742  T
Q  103 cgttgcagtgcgtctgattgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtg 202  Q
    ||||||||| | |  ||||||| || ||||| ||||||||||||| |||||||| |||||||| | ||||| ||| ||| |||||||| |||||||||||    
T  7784743 cgttgcagtccttgggattgttctcagagtgttgctcgaaagagcgttatacctgctgctttgctcaggggattgctggaacgtggattttgttaccgtg 7784842  T
Q  203 atgacggtcgatccattcgccaa 225  Q
     || | ||| |||||| ||||||    
T  7784843 ctggctgtcaatccatacgccaa 7784865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 22065807 - 22065881
Alignment:
Q  149 ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcc 223  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| ||||||| || |||||||||||||||||    
T  22065807 ttatacctgctgctttgttaagggggttgttggtacgtggatcttgataccgtgttggcggtcgatccattcgcc 22065881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 20626707 - 20626618
Alignment:
Q  136 gctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 225  Q
    |||| |||||||| | ||||| || ||| ||| ||||||||| | |||||||||||||| ||||||| || |||| ||||||||||||||    
T  20626707 gctcaaaagagctatttacctgctacttggttcagggggttgctagtacgtggatcttgataccgtgttggcggttgatccattcgccaa 20626618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 38011544 - 38011455
Alignment:
Q  135 tgctcgaaagagcttt-atacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcc 223  Q
    |||||||||||||||| || | | |||||| ||| |||| | |||||| || ||||| ||||||||||| ||||||||||||||||||||    
T  38011544 tgctcgaaagagcttttatgcttgctgcttagttcagggagctgttggcacttggattttgttaccgtgttgacggtcgatccattcgcc 38011455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 41322015 - 41322132
Alignment:
Q  85 cggtaccgtccttttatccgttgcagtgcgtctga-ttgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggta 183  Q
    |||||| ||||| |||||||||||||| | | ||| ||||||| |  ||| ||||||| |||||||||||||| |||||||||| ||||  ||| |||      
T  41322015 cggtactgtcctcttatccgttgcagttcttgtgacttgttttagaggtgttgctcgacagagctttatacctgctgctttgttcagggaattgctggac 41322114  T
Q  184 cgtggatcttgttaccgt 201  Q
     |||||||||||||||||    
T  41322115 tgtggatcttgttaccgt 41322132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 12328414 - 12328506
Alignment:
Q  134 atgctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 225  Q
    ||||||||||||||| |||| ||  |||  ||||| ||||||||| ||||| ||||||| || ||||||  ||||||||||||||||| ||||    
T  12328414 atgctcgaaagagctattatgccggctgtgttgttcagggggttgctggtatgtggatcgtgataccgtattgacggtcgatccattcaccaa 12328506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 41421431 - 41421371
Alignment:
Q  158 ctgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccat 218  Q
    |||||||||| |||| | |||||| |||||||| ||||||||||| || ||||||||||||    
T  41421431 ctgctttgttcagggagctgttggcacgtggattttgttaccgtgttggcggtcgatccat 41421371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 23096549 - 23096488
Alignment:
Q  179 tggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaacccttttt 240  Q
    |||||||||||| ||| ||||||| || |||||||||||||| ||||  |||||| ||||||    
T  23096549 tggtacgtggattttgataccgtgttggcggtcgatccattcaccaatttaaaactcttttt 23096488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 248
Target Start/End: Original strand, 18012869 - 18012976
Alignment:
Q  141 aaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaacccttttt 240  Q
    |||||||||| | | | |||||||||| | |||||||||||||||||||||||| ||||||  || ||||| ||| |||||||||| ||||||||| |||    
T  18012869 aaagagctttgtgcatgctgctttgttcaaggggttgttggtacgtggatcttgataccgtattggcggtcaatcaattcgccaacttaaaaccctcttt 18012968  T
Q  241 tatcctac 248  Q
    ||||||||    
T  18012969 tatcctac 18012976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 3925536 - 3925630
Alignment:
Q  134 atgctcgaaagagct----ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 225  Q
    |||||||||||||||    |||||||| |||||||||| ||||||||| |||||||||||| ||||||||||| ||  ||||||||||||||||||    
T  3925536 atgctcgaaagagctattattatacctgctgctttgttcagggggttgctggtacgtggat-ttgttaccgtgttggtggtcgatccattcgccaa 3925630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 5215129 - 5215211
Alignment:
Q  159 tgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaaccctttttt 241  Q
    ||||||||| | ||||||||||||||||||||||||  || ||| ||||||||||||||||  ||||  || |||||||||||    
T  5215129 tgctttgttcaaggggttgttggtacgtggatcttgaaactgtgttgacggtcgatccatttaccaaattataaccctttttt 5215211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 4157577 - 4157670
Alignment:
Q  134 atgctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaac 226  Q
    ||||| ||||||||| || | ||||||  |||||| ||| || || |||| ||||||||||| ||||||| |||||||| ||||||||||||||    
T  4157577 atgctggaaagagctattttgcctactattttgttcaggaggctgctggtgcgtggatcttgataccgtgttgacggtcaatccattcgccaac 4157670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 35078112 - 35078046
Alignment:
Q  158 ctgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcca 224  Q
    ||||||| || | ||||||  ||||||||||||||||  |||||| || ||||||||||||||||||    
T  35078112 ctgctttcttcatggggtttctggtacgtggatcttgaaaccgtgttggcggtcgatccattcgcca 35078046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 35193242 - 35193302
Alignment:
Q  134 atgctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatctt 193  Q
    ||||||||||||||| |||| |||| || |||||| ||| ||||||||||||| |||||||    
T  35193242 atgctcgaaagagctattatgcctattggtttgttcaggaggttgttggtacgcggatctt 35193302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 31132 - 31225
Alignment:
Q  134 atgctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaac 226  Q
    ||||||||||||||| || | |||  || |||||| ||| ||||| |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  31132 atgctcgaaagagctattttgcctggtgttttgttcaggaggttgctggtacgtggatcttgataccgtgttgacggtcgatccattcgccaac 31225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 14635830 - 14635725
Alignment:
Q  135 tgctcgaaagagctt-tatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaac 233  Q
    ||||||||||||||  ||| ||| |||||||||| |||||| | | ||||||||||| ||||||||||| |||||||||||||||||||| || | ||||    
T  14635830 tgctcgaaagagctcctatgcctgctgctttgttcaggggggtct-ggtacgtggat-ttgttaccgtgttgacggtcgatccattcgcctactttaaac 14635733  T
Q  234 cctttttt 241  Q
    ||||||||    
T  14635732 cctttttt 14635725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 11871507 - 11871568
Alignment:
Q  163 ttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcca 224  Q
    ||||| |||| |||||||| || ||||| ||||||||||| |  ||||||||||||||||||    
T  11871507 ttgttcagggagttgttggcacttggattttgttaccgtgttagcggtcgatccattcgcca 11871568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 18628935 - 18628874
Alignment:
Q  163 ttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcca 224  Q
    ||||| |||| | |||||| || ||||| ||||||||||| || ||||||||||||||||||    
T  18628935 ttgttcagggagctgttggcacttggattttgttaccgtgttggcggtcgatccattcgcca 18628874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 32365995 - 32366052
Alignment:
Q  134 atgctcgaaagagcttt-atacctactgctttgtttagggggttgttggtacgtggat 190  Q
    ||||||||||||||||| || ||| |||| ||||||  ||||||||||||||||||||    
T  32365995 atgctcgaaagagcttttatgcctgctgcattgtttgaggggttgttggtacgtggat 32366052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 43031406 - 43031353
Alignment:
Q  172 gggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 225  Q
    |||||| |||||||||||||| ||||||||| || |||| ||||||||| ||||    
T  43031406 gggttgctggtacgtggatctggttaccgtgttggcggtagatccattcaccaa 43031353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 23043549 - 23043601
Alignment:
Q  169 agggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcg 221  Q
    ||||||||| |||||||||||| ||| ||||||| ||  ||||||||||||||    
T  23043549 agggggttgctggtacgtggatattgataccgtgttggtggtcgatccattcg 23043601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 43574070 - 43574000
Alignment:
Q  169 agggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaaccctttt 239  Q
    ||||||||| |||||||||||||||| ||||||| || |||||  ||||||||||||  ||||||||||||    
T  43574070 agggggttgctggtacgtggatcttgataccgtgttggcggtcagtccattcgccaatttaaaaccctttt 43574000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 22575279 - 22575185
Alignment:
Q  136 gctcgaaagagc-tttatacctactgctttgtttagggggttgttggtacgtggatcttgtt---accgtgatgac-ggtcgatccattcgccaa 225  Q
    |||||||||||| ||||  ||| |||||||||| ||||||||| ||||||||||||||| ||   |||||| || | ||||||||||||||||||    
T  22575279 gctcgaaagagcatttacgcctgctgctttgttcagggggttgctggtacgtggatcttcttgataccgtgttggctggtcgatccattcgccaa 22575185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 10393 - 10482
Alignment:
Q  134 atgctcgaaagagctt-tatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgc 222  Q
    |||||| ||||||||| ||| ||| |||||||||| ||||||||| ||||||||||||||||  || ||| || |||| |||||||||||    
T  10393 atgctcaaaagagcttctatgcctgctgctttgttcagggggttgctggtacgtggatcttgaaactgtgttggcggtggatccattcgc 10482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 30744 - 30829
Alignment:
Q  135 tgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgc 222  Q
    |||||||||||||||||| | | |||||| ||  |||| |||||||| || ||||| ||||||||||| |||||||| ||||||||||    
T  30744 tgctcgaaagagctttatgcttgctgctt-gtgcagggagttgttggcacttggat-ttgttaccgtgttgacggtcaatccattcgc 30829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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