View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085_1D_low_30 (Length: 250)
Name: NF2085_1D_low_30
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 40718258 - 40718494
Alignment:
| Q |
10 |
gcagaacctgtgaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaatagcag |
109 |
Q |
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| T |
40718258 |
gcagaatctgtgaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacatatataactttcctctaataacag |
40718357 |
T |
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| Q |
110 |
cgcattttaaaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgcttttaccgcttctccgggcgt |
209 |
Q |
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| T |
40718358 |
cgcattttaaaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgcttttaccacttctccgggtgt |
40718457 |
T |
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| Q |
210 |
tgccatcttcggaaacttagctcaacagaatttgttg |
246 |
Q |
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| T |
40718458 |
tgccatcttcggaaacttagctcaacagaatttgttg |
40718494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 14183510 - 14183683
Alignment:
| Q |
19 |
gtgaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaatagcagcgcatttta |
118 |
Q |
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| T |
14183510 |
gtgaaactgaagcgtgttaatgatccaacccgattatttaacctttgctatagcgtcacatcagatggatatgattttcctataataacgacacatttta |
14183609 |
T |
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| Q |
119 |
aaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgctttt |
192 |
Q |
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| T |
14183610 |
aaggtgcggatgttaagttgcatcctattagtacatttgttgatgttgcagatggcattgtttgtcttgctttt |
14183683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 14183716 - 14183755
Alignment:
| Q |
207 |
cgttgccatcttcggaaacttagctcaacagaatttgttg |
246 |
Q |
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| T |
14183716 |
cgtttccatcttcggaaacttagctcagcagaatttgttg |
14183755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 19648985 - 19648847
Alignment:
| Q |
19 |
gtgaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaatagcagcgcatttta |
118 |
Q |
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| T |
19648985 |
gtgaaactagatcgtgttgatgatcctaatcaactattaaacctttgttatagtatcacatcagaccaatatgattttcctataatcactgcacatttta |
19648886 |
T |
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| Q |
119 |
aaggtgcggatattaagttgcatcccattagtacctttg |
157 |
Q |
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| T |
19648885 |
aaggtgcagatattaagttgaacccaattagtacctttg |
19648847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 34666260 - 34666432
Alignment:
| Q |
19 |
gtgaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaatagcagcgcatttta |
118 |
Q |
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| T |
34666260 |
gtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgcacatttta |
34666359 |
T |
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| Q |
119 |
aaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgcttt |
191 |
Q |
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| T |
34666360 |
aaggtgccgatattgagttgcattctattagtacctttgttccaattactgatggtattgtttgctttgcttt |
34666432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 34646566 - 34646738
Alignment:
| Q |
19 |
gtgaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagacagatataactttcctctaatagcagcgcatttta |
118 |
Q |
| |
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||||||||||| |||||||||||||| | ||||||||| | ||| ||||||||| | |||| | |||| | |||||| |||| | | ||||||| |
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| T |
34646566 |
gtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgtacatttta |
34646665 |
T |
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| Q |
119 |
aaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctttgcttt |
191 |
Q |
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| T |
34646666 |
aaggtgccgatgttgagttgcattctattagtacctttgttccaattactgatggtattgtttgctttgcttt |
34646738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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