View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085_1D_low_37 (Length: 234)
Name: NF2085_1D_low_37
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 4 - 215
Target Start/End: Complemental strand, 36462927 - 36462716
Alignment:
| Q |
4 |
tggtgtttggtttgatgagtttgaaggtcttgggctagaagattgtttagataaaacatggcctataacttctatttatattgatgatagaaccaccaag |
103 |
Q |
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| T |
36462927 |
tggtgtttggtttgatgagtttgaaggtcttgggctagaagattgtttagataaaacatggcctataacttctatttatattgatgatagaaccaccaag |
36462828 |
T |
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| Q |
104 |
tatttggatcgttgttacggaagggttaataaacggaaacttaaagagaacttggttaaaggttgtgtttttaacggtgttagattttataaggcaaagg |
203 |
Q |
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| T |
36462827 |
tatttggatcgttgttacggaagggttaataaaaggaaacttaaagagaacttggttaaaggttgtgtttttaacggtgttagattttataaggcaaagg |
36462728 |
T |
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| Q |
204 |
caatgcaaattg |
215 |
Q |
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|||||||||||| |
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| T |
36462727 |
caatgcaaattg |
36462716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 4 - 198
Target Start/End: Original strand, 36455638 - 36455832
Alignment:
| Q |
4 |
tggtgtttggtttgatgagtttgaaggtcttgggctagaagattgtttagataaaacatggcctataacttctatttatattgatgatagaaccaccaag |
103 |
Q |
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|||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | || ||| |
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| T |
36455638 |
tggtgtgtggttggatgagtttgaaggacttgggctagaagattgtttagataaaacatggcctatggcttctatttatatcgatgataacaaaacaaag |
36455737 |
T |
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| Q |
104 |
tatttggatcgttgttacggaagggttaataaacggaaacttaaagagaacttggttaaaggttgtgtttttaacggtgttagattttataaggc |
198 |
Q |
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| T |
36455738 |
tatttggatcgttgctatggaagggttagtaggaagaaacttaaggagaaattggttaaaggttgtgtttttaacggagttagattttacaaggc |
36455832 |
T |
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