View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085_1D_low_4 (Length: 576)
Name: NF2085_1D_low_4
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 25 - 464
Target Start/End: Original strand, 40234007 - 40234447
Alignment:
| Q |
25 |
gaagacttcccagtggaatannnnnnngaataagtggattagtgatttt-tccattttcaaaaggtgaaaataaaacttccaaactttttcaatacctaa |
123 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40234007 |
gaagacttcccagtggaatatttttttgcataagtggattagtgattttttccattttcaaaaggtgaaaataaaacttccaaactttttcaatacctaa |
40234106 |
T |
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| Q |
124 |
actttatatataaaacagttattacaaagaaaacaagtgactttaacctaatgaaggttttcaaattcaattctgatcaacaattagcaataacatttca |
223 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40234107 |
actttatagataaaacagttattacaaagaaaacaagtgactttaacctaatgaaggttttcaaattcaattctgatcaacaattagcaataacatttca |
40234206 |
T |
|
| Q |
224 |
accattgtgcattgcaatattcaaatgtaaaatcagagaaatgattctgcaatagttgaaacttaataatattatccaatgaggcatagataaaagtggt |
323 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40234207 |
accattgtgcattgcaatcttccaatgtaaaatcagagaaatgattctgcaatagttgaaactaaataatattatccaatgaggcatagataaaagtggt |
40234306 |
T |
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| Q |
324 |
catcatagtcatggcagaaactgttccataagaaagttataaaaacacccttcataaaaatattttacaagtaaacaagtttcaagttaatagaagtact |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40234307 |
catcatagtcatggcagaaactgttccataagaaagttataaaaacacccttcataaaaatattttacaaataaacaagtttcaagttaatagaagtact |
40234406 |
T |
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| Q |
424 |
tttgctgcttgactcattcattcctaataacgtgcacccta |
464 |
Q |
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| T |
40234407 |
tttgctgcttgactcattcgttcctaataacgtgcacccta |
40234447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 41183865 - 41183815
Alignment:
| Q |
337 |
gcagaaactgttccataagaaagttataaaaacacccttcataaaaatatt |
387 |
Q |
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| T |
41183865 |
gcagaaaccatttcataagaaagttataaaaacacacttcataaaaatatt |
41183815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 413
Target Start/End: Complemental strand, 7281680 - 7281644
Alignment:
| Q |
377 |
ataaaaatattttacaagtaaacaagtttcaagttaa |
413 |
Q |
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||||||||||||||||| ||||||||||||||||||| |
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| T |
7281680 |
ataaaaatattttacaaataaacaagtttcaagttaa |
7281644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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