View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085_1D_low_41 (Length: 231)
Name: NF2085_1D_low_41
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 7333945 - 7333844
Alignment:
| Q |
27 |
acttaagaaacagaacacgctcctccgacaataacagacaaaccaagtaccctatggtccacaacattcttccacacactctttcaaagtttctctctca |
126 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7333945 |
acttaagaaacagaacacgcttctccgacaataacagacaaaccaagtaccctatggtccacaacattcttccacacactctttcaaagtttctctctca |
7333846 |
T |
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| Q |
127 |
ca |
128 |
Q |
| |
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|| |
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| T |
7333845 |
ca |
7333844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 7299728 - 7299832
Alignment:
| Q |
24 |
aacacttaagaaacagaacacgctcctccgacaataacagacaaaccaagtaccctatggtccacaacattcttccacacactctttcaaagtttctctc |
123 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
7299728 |
aacacttacgaaacagaacacgctcctccgacaataacagacaaaccaagtaccctatggtccccaacattcttccacacactctttgaaagtttctctc |
7299827 |
T |
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| Q |
124 |
tcaca |
128 |
Q |
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||||| |
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| T |
7299828 |
tcaca |
7299832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 7340697 - 7340629
Alignment:
| Q |
37 |
cagaacacgctcctccgacaataacagacaaaccaagtaccctatggtccacaacattcttccacacac |
105 |
Q |
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||||||| ||||||| ||||||||||||| |||||| || |||||||| | ||||||| |||||||||| |
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| T |
7340697 |
cagaacatgctcctctgacaataacagacgaaccaaatatcctatggttcccaacattattccacacac |
7340629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 7299872 - 7299905
Alignment:
| Q |
168 |
catttttcatcaccaaaatctcacaaacaccaaa |
201 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
7299872 |
catttttcatcaccaaaatctcacaaacaacaaa |
7299905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 7333804 - 7333771
Alignment:
| Q |
168 |
catttttcatcaccaaaatctcacaaacaccaaa |
201 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
7333804 |
catttttcatcaccaaaatctcacaaacaacaaa |
7333771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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