View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085_1D_low_46 (Length: 226)
Name: NF2085_1D_low_46
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 31131311 - 31131509
Alignment:
| Q |
19 |
acaatggatttctgacatcctccaaactataccttcctccacctttgtcctccaccgccccttcggctcctgctcagtcatcacggcaaaccccgccgta |
118 |
Q |
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| T |
31131311 |
acaatggatttctgacatcctccaaactataccttcctccacctttgtcctccaccgccccttcggctcctgctcagtcatcacggcaaaccccgtcgta |
31131410 |
T |
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| Q |
119 |
gtccaacacattctcaaaactaacttcccttgttacaacaaaggtcccacatttcatcaatccctcgttgagtttcttggtaacggtatcttcaacacc |
217 |
Q |
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| T |
31131411 |
gtccaacacattctaaaaaccaacttcccttgttacaacaaaggtcccacatttcatcaatccctcgttgagtttcttggtaacggtatcttcaacacc |
31131509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 23 - 164
Target Start/End: Original strand, 31077289 - 31077430
Alignment:
| Q |
23 |
tggatttctgacatcctccaaactataccttcctccacctttgtcctccaccgccccttcggctcctgctcagtcatcacggcaaaccccgccgtagtcc |
122 |
Q |
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| T |
31077289 |
tggatctccgacatcctccaaaccatcccttcttccaccttcatcctccaccgctccttcggttcccgccaagttttcacggcaaaccccgccgtagtgc |
31077388 |
T |
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| Q |
123 |
aacacattctcaaaactaacttcccttgttacaacaaaggtc |
164 |
Q |
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|||| ||||||||||| ||||||||||| ||| |||||||| |
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| T |
31077389 |
aacatattctcaaaaccaacttcccttgctaccgcaaaggtc |
31077430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 31126603 - 31126748
Alignment:
| Q |
19 |
acaatggatttctgacatcctccaaactataccttcctccacctttgtcctccaccgccccttcggctcctgctcagtcatcacggcaaaccccgccgta |
118 |
Q |
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||||||||| |||| || |||||||| || |||||||||||||| || |||||||| ||||||| ||| | |||| ||||||||||||| ||||| |
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| T |
31126603 |
acaatggatagctgatattctccaaaccatcccttcctccaccttcatcttccaccgcgccttcggttcccgtcaagtcttcacggcaaaccctgccgtg |
31126702 |
T |
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| Q |
119 |
gtccaacacattctcaaaactaacttcccttgttacaacaaaggtc |
164 |
Q |
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|| ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
31126703 |
gtgcaacacattctcaaaaccaacttcccttgctacaacaaaggtc |
31126748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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