View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2085_1D_low_49 (Length: 223)

Name: NF2085_1D_low_49
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2085_1D_low_49
NF2085_1D_low_49
[»] chr4 (7 HSPs)
chr4 (13-217)||(49229233-49229434)
chr4 (149-217)||(21208641-21208709)
chr4 (146-217)||(21790108-21790179)
chr4 (154-205)||(31089895-31089947)
chr4 (151-188)||(43616241-43616278)
chr4 (149-205)||(29006840-29006896)
chr4 (149-205)||(54164892-54164948)
[»] chr7 (11 HSPs)
chr7 (151-217)||(47708408-47708474)
chr7 (149-217)||(47534975-47535043)
chr7 (152-217)||(47712487-47712552)
chr7 (151-202)||(3967712-3967763)
chr7 (151-217)||(2456343-2456409)
chr7 (149-205)||(3967784-3967840)
chr7 (149-202)||(34750410-34750464)
chr7 (150-203)||(44182528-44182580)
chr7 (151-203)||(3105953-3106005)
chr7 (167-205)||(45339541-45339579)
chr7 (150-203)||(35436307-35436360)
[»] chr1 (8 HSPs)
chr1 (151-217)||(748716-748782)
chr1 (151-217)||(15057664-15057730)
chr1 (149-203)||(20273201-20273255)
chr1 (151-205)||(39617315-39617369)
chr1 (155-207)||(5246218-5246270)
chr1 (157-193)||(42074224-42074260)
chr1 (149-205)||(42915725-42915781)
chr1 (149-205)||(52923402-52923458)
[»] chr2 (8 HSPs)
chr2 (149-205)||(44587722-44587778)
chr2 (175-217)||(2577742-2577784)
chr2 (151-223)||(19268067-19268139)
chr2 (149-205)||(44587648-44587704)
chr2 (151-202)||(40363226-40363277)
chr2 (153-203)||(38871453-38871503)
chr2 (149-205)||(2577679-2577736)
chr2 (149-217)||(25625915-25625983)
[»] chr6 (4 HSPs)
chr6 (149-203)||(3203676-3203730)
chr6 (157-192)||(3846444-3846479)
chr6 (150-203)||(3203752-3203805)
chr6 (152-205)||(33472694-33472747)
[»] chr8 (6 HSPs)
chr8 (153-205)||(12736364-12736416)
chr8 (157-203)||(27988092-27988138)
chr8 (157-203)||(28045394-28045440)
chr8 (149-207)||(10934608-10934666)
chr8 (150-188)||(17871859-17871897)
chr8 (149-205)||(13964424-13964480)
[»] chr3 (5 HSPs)
chr3 (149-205)||(50603592-50603648)
chr3 (149-192)||(36270081-36270124)
chr3 (149-205)||(34036551-34036607)
chr3 (150-205)||(39682615-39682670)
chr3 (157-203)||(26331231-26331277)
[»] chr5 (3 HSPs)
chr5 (149-188)||(7613363-7613402)
chr5 (149-205)||(13356216-13356272)
chr5 (149-205)||(42910791-42910847)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 49229434 - 49229233
Alignment:
Q  13 tgaataagacataaaccatttaatcaactcaattgcgttatgtcgttcaactgtgacgggagaaccatacacggtacgacatgtcaaaatcatatactag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  49229434 tgaataagacataaaccatttaatcaactcaattgcgttatgtcgttcaactgtgacgggagaaccatacacggtacgacatgtcaaaatcatatactaa 49229335  T
Q  113 tagtacgtttgaaagataggacatacttcctcgtcgggtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgtagacatt 212  Q
    | |||||| |||||||||||||||||||||   ||||||||||| |||||| |||||| ||||||||| ||| ||||||||| |||| |||||| |||||    
T  49229334 tcgtacgtatgaaagataggacatacttcc---tcgggtcactactataagtaaaaaataattttttaggtttattgaatgaatgatatatgtaaacatt 49229238  T
Q  213 aatat 217  Q
    |||||    
T  49229237 aatat 49229233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 21208709 - 21208641
Alignment:
Q  149 ggtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgtagacattaatat 217  Q
    ||||||||||||||||||||||  |||||||| ||||||||||| |||||||||| ||  |||||||||    
T  21208709 ggtcactattataagcaaaaaattattttttaggttcattgaataagtgatgtatataaccattaatat 21208641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 21790108 - 21790179
Alignment:
Q  146 tcgggtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgtagacattaatat 217  Q
    |||||||| ||||||||| |||||| | ||||||||||| ||||||||||||||| |||| | |||||||||    
T  21790108 tcgggtcattattataagaaaaaaatatttttttaagtttattgaatgagtgatgaatgtggtcattaatat 21790179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 31089895 - 31089947
Alignment:
Q  154 ctattataagcaaaaaa-caattttttaagttcattgaatgagtgatgtatgt 205  Q
    ||||||||||||||||| | |||||||| ||||||||||||||||||||||||    
T  31089895 ctattataagcaaaaaaactattttttaggttcattgaatgagtgatgtatgt 31089947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 43616278 - 43616241
Alignment:
Q  151 tcactattataagcaaaaaacaattttttaagttcatt 188  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  43616278 tcactattataagcaaaaatcaattttttaaattcatt 43616241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 29006840 - 29006896
Alignment:
Q  149 ggtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgt 205  Q
    ||||||||||||||||||||| | ||||||||  |||||| ||| | ||||||||||    
T  29006840 ggtcactattataagcaaaaatctattttttagattcattcaataaatgatgtatgt 29006896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 54164948 - 54164892
Alignment:
Q  149 ggtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgt 205  Q
    ||||||||||||||||||||| | ||||||||  |||||| ||| | ||||||||||    
T  54164948 ggtcactattataagcaaaaatctattttttagattcattcaataaatgatgtatgt 54164892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 47708408 - 47708474
Alignment:
Q  151 tcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgtagacattaatat 217  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | |||||||||    
T  47708408 tcactattataagcaaaaaactactttttaagttcattgaatgagtgatgtatgttgtcattaatat 47708474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 47534975 - 47535043
Alignment:
Q  149 ggtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgtagacattaatat 217  Q
    ||||||||||||||||||||||| | |||||||||||||| |||||||||||||| | | |||||||||    
T  47534975 ggtcactattataagcaaaaaactactttttaagttcattaaatgagtgatgtatcttgtcattaatat 47535043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 47712487 - 47712552
Alignment:
Q  152 cactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgtagacattaatat 217  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||| ||| | | |||||||||    
T  47712487 cactattataagcaaaaaactatttttgaagttcattgaatgagtgatatatcttgtcattaatat 47712552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 3967712 - 3967763
Alignment:
Q  151 tcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgta 202  Q
    ||||||||||||||||||||| | |||||| |||||||||||||||||||||    
T  3967712 tcactattataagcaaaaaactactttttaggttcattgaatgagtgatgta 3967763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 2456343 - 2456409
Alignment:
Q  151 tcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgtagacattaatat 217  Q
    ||||||||||||||||||| | | |||||| ||||||||||| | |||||||||| |||||||||||    
T  2456343 tcactattataagcaaaaatctactttttaggttcattgaattaatgatgtatgtggacattaatat 2456409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 3967840 - 3967784
Alignment:
Q  149 ggtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgt 205  Q
    ||||||||||||||||||||||| | |||||| ||||||||||| | ||||||||||    
T  3967840 ggtcactattataagcaaaaaactactttttaggttcattgaataaatgatgtatgt 3967784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 34750464 - 34750410
Alignment:
Q  149 ggtcactattataagcaaaaaa-caattttttaagttcattgaatgagtgatgta 202  Q
    |||||||||||||||||||||| | | |||||||||||||||||| |||||||||    
T  34750464 ggtcactattataagcaaaaaaactactttttaagttcattgaataagtgatgta 34750410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 44182528 - 44182580
Alignment:
Q  150 gtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtat 203  Q
    |||||||||||||||||||||||||||||| | |||||||||| | ||||||||    
T  44182528 gtcactattataagcaaaaaacaattttttga-ttcattgaataaatgatgtat 44182580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 3105953 - 3106005
Alignment:
Q  151 tcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtat 203  Q
    ||||||||||||||||||||  |||||||| ||| |||||||||||| |||||    
T  3105953 tcactattataagcaaaaaattattttttaggtttattgaatgagtgttgtat 3106005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 45339579 - 45339541
Alignment:
Q  167 aaaacaattttttaagttcattgaatgagtgatgtatgt 205  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  45339579 aaaacaattttttaaattcattcaatgagtgatgtatgt 45339541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 35436360 - 35436307
Alignment:
Q  150 gtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtat 203  Q
    |||||||||||||| ||||||| | |||||| ||||||||||| | ||||||||    
T  35436360 gtcactattataagtaaaaaaccactttttaggttcattgaataattgatgtat 35436307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 748782 - 748716
Alignment:
Q  151 tcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgtagacattaatat 217  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||  |||||||||    
T  748782 tcactattataagcaaaaaacaattttttagattcattgaatgagtgatgtatgtaaccattaatat 748716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 15057664 - 15057730
Alignment:
Q  151 tcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgtagacattaatat 217  Q
    ||||||||||||||||||||| | ||||||  ||||||||||||||||||||||| | |||||||||    
T  15057664 tcactattataagcaaaaaactactttttagattcattgaatgagtgatgtatgtggtcattaatat 15057730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 20273255 - 20273201
Alignment:
Q  149 ggtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtat 203  Q
    ||||||| ||||||||||||||||| ||||| | |||||||||| | ||||||||    
T  20273255 ggtcactgttataagcaaaaaacaacttttttaattcattgaataaatgatgtat 20273201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 39617315 - 39617369
Alignment:
Q  151 tcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgt 205  Q
    ||||||||||||| ||||||| | ||||||  || ||||||||||||||||||||    
T  39617315 tcactattataagtaaaaaactactttttagatttattgaatgagtgatgtatgt 39617369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 5246270 - 5246218
Alignment:
Q  155 tattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgtag 207  Q
    |||||||| |||||||| ||||||||  |||||||||| | ||||||||||||    
T  5246270 tattataaacaaaaaactattttttagattcattgaataaatgatgtatgtag 5246218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 42074260 - 42074224
Alignment:
Q  157 ttataagcaaaaaacaattttttaagttcattgaatg 193  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  42074260 ttataagcaaaaaactattttttaggttcattgaatg 42074224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 42915781 - 42915725
Alignment:
Q  149 ggtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgt 205  Q
    ||||||||||||||||||||||  | |||||||||||||| ||| | |||| |||||    
T  42915781 ggtcactattataagcaaaaaaacactttttaagttcattaaataaatgatatatgt 42915725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 52923458 - 52923402
Alignment:
Q  149 ggtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgt 205  Q
    ||||||||||||||||||||| | | |||||| ||||||| ||| | ||||||||||    
T  52923458 ggtcactattataagcaaaaatctactttttaggttcattcaataaatgatgtatgt 52923402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 44587778 - 44587722
Alignment:
Q  149 ggtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgt 205  Q
    ||||||||||||||||||||||| | ||||||  |||||||||||||||||||||||    
T  44587778 ggtcactattataagcaaaaaactactttttagattcattgaatgagtgatgtatgt 44587722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 2577784 - 2577742
Alignment:
Q  175 tttttaagttcattgaatgagtgatgtatgtagacattaatat 217  Q
    |||||||||||||||||||||| |||||||||| |||||||||    
T  2577784 tttttaagttcattgaatgagttatgtatgtagccattaatat 2577742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 19268067 - 19268139
Alignment:
Q  151 tcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgtagacattaatattgatga 223  Q
    ||||| ||||||||||||| ||| |||||||||||||| ||| | |||||||| ||| || |||||| |||||    
T  19268067 tcactgttataagcaaaaatcaactttttaagttcattcaataaatgatgtatttagtcaataatatagatga 19268139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 44587648 - 44587704
Alignment:
Q  149 ggtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgt 205  Q
    ||||| |||||||||||||| || |||||||| ||||||||||| | ||||||||||    
T  44587648 ggtcattattataagcaaaatactattttttaggttcattgaataaatgatgtatgt 44587704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 202
Target Start/End: Original strand, 40363226 - 40363277
Alignment:
Q  151 tcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgta 202  Q
    ||||||||||||||||||||| | |||||| ||||||||||| | |||||||    
T  40363226 tcactattataagcaaaaaactactttttaggttcattgaataaatgatgta 40363277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 38871453 - 38871503
Alignment:
Q  153 actattataagcaaaaaacaattttttaagttcattgaatgagtgatgtat 203  Q
    ||||||||||||||||||||||||| ||| || ||||||| | ||||||||    
T  38871453 actattataagcaaaaaacaattttctaaatttattgaataaatgatgtat 38871503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 2577679 - 2577736
Alignment:
Q  149 ggtcactattataagc-aaaaaacaattttttaagttcattgaatgagtgatgtatgt 205  Q
    |||||||||||||| | ||||||| |||||||| |||||||||| || ||||||||||    
T  2577679 ggtcactattataaacaaaaaaactattttttaggttcattgaacgaatgatgtatgt 2577736  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 25625983 - 25625915
Alignment:
Q  149 ggtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgtagacattaatat 217  Q
    |||||||||||||| |||| |||||| |||||  || ||||||| |||  ||||||||| |||||||||    
T  25625983 ggtcactattataaacaaacaacaatcttttagatttattgaataagttgtgtatgtagccattaatat 25625915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 3203676 - 3203730
Alignment:
Q  149 ggtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtat 203  Q
    ||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||    
T  3203676 ggtcactattataagcaaaaatcaattttttaggttcattcaatgaatgatgtat 3203730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 3846444 - 3846479
Alignment:
Q  157 ttataagcaaaaaacaattttttaagttcattgaat 192  Q
    |||||||||||||| |||||||||||||||||||||    
T  3846444 ttataagcaaaaaataattttttaagttcattgaat 3846479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 3203805 - 3203752
Alignment:
Q  150 gtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtat 203  Q
    |||||||||||||||||||| ||| |||||| ||||||| ||| | ||||||||    
T  3203805 gtcactattataagcaaaaatcaactttttaggttcatttaataaatgatgtat 3203752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 33472694 - 33472747
Alignment:
Q  152 cactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgt 205  Q
    |||||||||||| |||||   ||||||||| |||||| ||||||||||||||||    
T  33472694 cactattataagtaaaaacatattttttaaattcattaaatgagtgatgtatgt 33472747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 12736364 - 12736416
Alignment:
Q  153 actattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgt 205  Q
    ||||||||||||||||||| | |||||| ||||||||||||| ||||||||||    
T  12736364 actattataagcaaaaaactactttttaggttcattgaatgattgatgtatgt 12736416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 27988092 - 27988138
Alignment:
Q  157 ttataagcaaaaaacaattttttaagttcattgaatgagtgatgtat 203  Q
    ||||||||||||||||| |||||||||||||||||| ||| ||||||    
T  27988092 ttataagcaaaaaacaactttttaagttcattgaataagtaatgtat 27988138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 28045394 - 28045440
Alignment:
Q  157 ttataagcaaaaaacaattttttaagttcattgaatgagtgatgtat 203  Q
    ||||||||||||||||| |||||||||||||||||| ||| ||||||    
T  28045394 ttataagcaaaaaacaactttttaagttcattgaataagtaatgtat 28045440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 10934608 - 10934666
Alignment:
Q  149 ggtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgtag 207  Q
    ||||||||||||||||||||||| || |||||  |||||| ||| | ||||||||||||    
T  10934608 ggtcactattataagcaaaaaactatattttacattcatttaattaatgatgtatgtag 10934666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 17871897 - 17871859
Alignment:
Q  150 gtcactattataagcaaaaaacaattttttaagttcatt 188  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  17871897 gtcactattataagcaaaaatcaattttttaggttcatt 17871859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 13964424 - 13964480
Alignment:
Q  149 ggtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgt 205  Q
    ||||||||||||||||||||| |||  |||||| |||||| ||| | ||||||||||    
T  13964424 ggtcactattataagcaaaaatcaacattttaaattcattcaataaatgatgtatgt 13964480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 50603648 - 50603592
Alignment:
Q  149 ggtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgt 205  Q
    ||||||||||||||||||||| | |||||||||||||||| ||| | ||||||||||    
T  50603648 ggtcactattataagcaaaaatctattttttaagttcattcaataaatgatgtatgt 50603592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 36270124 - 36270081
Alignment:
Q  149 ggtcactattataagcaaaaaacaattttttaagttcattgaat 192  Q
    ||||||||||||||||||||||| |||||||| |||||||||||    
T  36270124 ggtcactattataagcaaaaaaccattttttatgttcattgaat 36270081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 34036551 - 34036607
Alignment:
Q  149 ggtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgt 205  Q
    |||||||||| ||||||||||   | |||||||||||||||||| ||||||||||||    
T  34036551 ggtcactattttaagcaaaaatgcactttttaagttcattgaataagtgatgtatgt 34036607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 39682615 - 39682670
Alignment:
Q  150 gtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgt 205  Q
    |||||||||||||| ||||||  |||||||| ||||||||||| | ||||||||||    
T  39682615 gtcactattataagtaaaaaattattttttaggttcattgaataaatgatgtatgt 39682670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 26331231 - 26331277
Alignment:
Q  157 ttataagcaaaaaacaattttttaagttcattgaatgagtgatgtat 203  Q
    ||||||||||||||||||||| || ||||||||||||| | ||||||    
T  26331231 ttataagcaaaaaacaattttctaggttcattgaatgactaatgtat 26331277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 7613363 - 7613402
Alignment:
Q  149 ggtcactattataagcaaaaaacaattttttaagttcatt 188  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  7613363 ggtcactattataagcaaaaatcaactttttaagttcatt 7613402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 13356272 - 13356216
Alignment:
Q  149 ggtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgt 205  Q
    ||||| ||||||||||||||| | | |||||||||||||| ||| | ||||||||||    
T  13356272 ggtcattattataagcaaaaatctactttttaagttcattcaataaatgatgtatgt 13356216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 42910847 - 42910791
Alignment:
Q  149 ggtcactattataagcaaaaaacaattttttaagttcattgaatgagtgatgtatgt 205  Q
    ||||||||||||||| |||| || | |||||| ||| ||||||||||||||| ||||    
T  42910847 ggtcactattataagtaaaatactactttttaggtttattgaatgagtgatgaatgt 42910791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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