View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085_1D_low_50 (Length: 222)
Name: NF2085_1D_low_50
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 40595987 - 40596178
Alignment:
| Q |
19 |
atcaagctatgtctggcaggggcctcatcactgcaggaccaatcaaaagtgtcagtcttaatctcagggacgacaacagaaagaattggcatgccagccc |
118 |
Q |
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| T |
40595987 |
atcaagctatgtctggcaggggcctcatcactgcaggaccaatcaaaagtgtcagtcttaatctcaggaacgacaacagaaagaattggcatgccagccc |
40596086 |
T |
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| Q |
119 |
tgtatttagccactaattttgcagtactccctcctctagttaaaaccaatataagtgctgctttagctgagttggccattttaactgcagaa |
210 |
Q |
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| T |
40596087 |
tgtatttagccactaattttgcagtactccctcctctagttaaaaccaatataagtgctgctttagctgagttggccattttaactgcagaa |
40596178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 32425281 - 32425472
Alignment:
| Q |
19 |
atcaagctatgtctggcaggggcctcatcactgcaggaccaatcaaaagtgtcagtcttaatctcagggacgacaacagaaagaattggcatgccagccc |
118 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| || || |||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
32425281 |
atcaagctatgtctggcagggacctcatcactgcaggaccaatcaaaggtatcggtcttaatctcaggaacgacaacagaaagaattggcatgcctgccc |
32425380 |
T |
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| Q |
119 |
tgtatttagccactaattttgcagtactccctcctctagttaaaaccaatataagtgctgctttagctgagttggccattttaactgcagaa |
210 |
Q |
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| T |
32425381 |
tatatttagccactaattttgcagtactccctcctctagttaaaaccaatataagtgctgctttagctgagtttgccattttaaccgcagaa |
32425472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 32419003 - 32419178
Alignment:
| Q |
19 |
atcaagctatgtctggcaggggcctcatcactgcaggaccaatcaaaagtgtcagtcttaatctcagggacgacaacagaaagaattggcatgccagccc |
118 |
Q |
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|||||||||||||| ||||||| |||||||||||| ||||||||||| || |||||| | | |||||| || |||||||||||||||||| |||| | || |
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| T |
32419003 |
atcaagctatgtctcgcaggggactcatcactgcatgaccaatcaaaggtatcagtcgttagctcaggaacaacaacagaaagaattggcgtgcctggcc |
32419102 |
T |
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| Q |
119 |
tgtatttagccactaattttgcagtactccctcctctagttaaaaccaatataagtgctgctttagctgagttggc |
194 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||| || |||||| |||| |||||||| |
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| T |
32419103 |
tgtatttagccaccaattttgcagtagtccctcctctagttaaaaccaatatgagagctgctctagcagagttggc |
32419178 |
T |
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