View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2085_1D_low_52 (Length: 221)

Name: NF2085_1D_low_52
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2085_1D_low_52
NF2085_1D_low_52
[»] chr4 (11 HSPs)
chr4 (8-215)||(31758548-31758758)
chr4 (116-214)||(2324728-2324828)
chr4 (118-214)||(2247648-2247744)
chr4 (123-215)||(21433941-21434035)
chr4 (133-204)||(21433860-21433933)
chr4 (134-190)||(15134555-15134613)
chr4 (118-190)||(15134660-15134734)
chr4 (146-213)||(19382299-19382366)
chr4 (147-214)||(42516514-42516581)
chr4 (173-214)||(993246-993287)
chr4 (121-190)||(52374892-52374963)
[»] chr2 (8 HSPs)
chr2 (121-214)||(18719708-18719801)
chr2 (148-206)||(8090921-8090979)
chr2 (147-204)||(16209378-16209435)
chr2 (137-190)||(1469730-1469785)
chr2 (134-214)||(6978958-6979038)
chr2 (125-190)||(9430230-9430297)
chr2 (134-214)||(42094272-42094353)
chr2 (137-211)||(39090369-39090445)
[»] chr3 (8 HSPs)
chr3 (118-215)||(37341200-37341294)
chr3 (121-210)||(3901566-3901656)
chr3 (145-211)||(40763440-40763506)
chr3 (153-210)||(3901508-3901565)
chr3 (134-212)||(36007426-36007506)
chr3 (120-190)||(36480681-36480753)
chr3 (147-211)||(11532507-11532571)
chr3 (121-214)||(19560604-19560699)
[»] chr1 (7 HSPs)
chr1 (134-189)||(40669023-40669078)
chr1 (136-214)||(40374106-40374183)
chr1 (134-214)||(7444269-7444351)
chr1 (134-190)||(34437690-34437748)
chr1 (134-214)||(38663639-38663721)
chr1 (169-214)||(23317934-23317979)
chr1 (157-213)||(2542772-2542828)
[»] chr7 (5 HSPs)
chr7 (121-214)||(26862982-26863077)
chr7 (147-208)||(49106980-49107041)
chr7 (134-211)||(5443602-5443680)
chr7 (121-214)||(10056692-10056787)
chr7 (134-190)||(12275728-12275784)
[»] chr6 (3 HSPs)
chr6 (117-214)||(1473586-1473685)
chr6 (133-187)||(10729959-10730013)
chr6 (121-214)||(12731623-12731718)
[»] chr8 (5 HSPs)
chr8 (147-204)||(35586482-35586539)
chr8 (121-212)||(8402549-8402640)
chr8 (147-214)||(40175963-40176030)
chr8 (125-163)||(23848245-23848283)
chr8 (138-215)||(42072654-42072731)
[»] chr5 (3 HSPs)
chr5 (146-214)||(3907723-3907793)
chr5 (151-204)||(33029501-33029554)
chr5 (121-183)||(42419992-42420056)
[»] scaffold0137 (1 HSPs)
scaffold0137 (121-212)||(8251-8343)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 31758548 - 31758758
Alignment:
Q  8 agagaagaaagcccaacccaacagtattaattagaaaaatgaatctgtgaaaccaataaagaaaagaaaatgaatgata---tatgtgaaaccaatttag 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||   ||||||||||||||||||    
T  31758548 agagaagaaagcccaacccaacagtattaattagaaaaatgaatctgtgaaaccaataaaaaaaagaaaatgaatgatagtatatgtgaaaccaatttag 31758647  T
Q  105 aaaacaattagaatttgaggaatggtaaaaacacacattttaacacacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaat 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  31758648 aaaacaattagaatttgaggaatggtaaaaacacacattttaacacacttttcaacacattctatttgattggttaaaattcacataagctccaccaaat 31758747  T
Q  205 catgtgggtct 215  Q
    |||||||||||    
T  31758748 catgtgggtct 31758758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 2324728 - 2324828
Alignment:
Q  116 aatttgaggaatggtaaaaacacacattttaac--acacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggt 213  Q
    |||| |||||||| ||| |||||||||||||||  ||||||||||| | | ||  ||| |||||||||||||||||| || | |||||||||||||||||    
T  2324728 aattagaggaatgataacaacacacattttaacgcacacttttcaatatactctctttgattggttaaaattcacatgagtttcaccaaatcatgtgggt 2324827  T
Q  214 c 214  Q
    |    
T  2324828 c 2324828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 2247744 - 2247648
Alignment:
Q  118 tttgaggaatggtaaaaacacacattttaacacacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggtc 214  Q
    ||||||||||| ||| |||||||||||||||||||||| |||| || ||  ||| ||||||||||||| ||||     |||||||||||||||||||    
T  2247744 tttgaggaatgctaacaacacacattttaacacactttccaacccactctctttgattggttaaaattaacatggatcccaccaaatcatgtgggtc 2247648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 21434035 - 21433941
Alignment:
Q  123 ggaatggtaaaaacacacattttaaca--cacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggtct 215  Q
    |||||||||  ||||||||||||||||  |||||||||||||| ||   || ||||||||||||||||||     ||||||||||||||||||||    
T  21434035 ggaatggtagcaacacacattttaacatacacttttcaacacactctcattgattggttaaaattcacatggatcccaccaaatcatgtgggtct 21433941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 21433860 - 21433933
Alignment:
Q  133 aaacacacattttaacacac--ttttcaacacattcgatttaattggttaaaattcacataagctccaccaaat 204  Q
    ||||||||||||||||||||  ||||||||||| ||  ||| |||||||||||||||||| ||  |||||||||    
T  21433860 aaacacacattttaacacacatttttcaacacactctctttgattggttaaaattcacatgagacccaccaaat 21433933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 15134555 - 15134613
Alignment:
Q  134 aacacacattttaacacac--ttttcaacacattcgatttaattggttaaaattcacat 190  Q
    |||||| ||||||||||||  ||||||||||||||  ||| ||||||||||||||||||    
T  15134555 aacacaaattttaacacacatttttcaacacattctcttttattggttaaaattcacat 15134613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 15134734 - 15134660
Alignment:
Q  118 tttgaggaatggtaaaaacacacattttaa--cacacttttcaacacattcgatttaattggttaaaattcacat 190  Q
    ||||||||||| ||| ||||||||||||||  |||||||||||||||| |   | | ||||||||||||||||||    
T  15134734 tttgaggaatgctaacaacacacattttaacgcacacttttcaacacactgtctgtgattggttaaaattcacat 15134660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 19382299 - 19382366
Alignment:
Q  146 aacacacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggt 213  Q
    |||||||||| ||||||| || |||| ||||||||||||||||||     ||||||||||||||||||    
T  19382299 aacacactttccaacacactctatttgattggttaaaattcacatggatcccaccaaatcatgtgggt 19382366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 42516581 - 42516514
Alignment:
Q  147 acacacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggtc 214  Q
    ||||||||||||||||||||  |||| |||||| |||||||||||||   ||| ||| ||||||||||    
T  42516581 acacacttttcaacacattctctttatttggtttaaattcacataagtcacactaaaccatgtgggtc 42516514  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 993246 - 993287
Alignment:
Q  173 attggttaaaattcacataagctccaccaaatcatgtgggtc 214  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  993246 attggttaaaattcacatgagtcccaccaaatcatgtgggtc 993287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 52374892 - 52374963
Alignment:
Q  121 gaggaatggtaaaaacacacatttta--acacacttttcaacacattcgatttaattggttaaaattcacat 190  Q
    |||||||| ||| |||||||||||||  ||||||||||||||||| ||  ||| || | |||||||||||||    
T  52374892 gaggaatgctaacaacacacattttaacacacacttttcaacacactctctttgatagattaaaattcacat 52374963  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 18719708 - 18719801
Alignment:
Q  121 gaggaatggtaaaaacacacattttaacacacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggtc 214  Q
    |||||||| ||  |||||||||| ||||||| ||||||||||| ||  ||| |||||||||||||||||  || ||||||||||||||||||||    
T  18719708 gaggaatgctagcaacacacattctaacacatttttcaacacactctttttgattggttaaaattcacacgagttccaccaaatcatgtgggtc 18719801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 8090979 - 8090921
Alignment:
Q  148 cacacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatca 206  Q
    |||||||||||||||| || |||||||| ||||||||||||||| | || |||||||||    
T  8090979 cacacttttcaacacactcaatttaatttgttaaaattcacatatgttctaccaaatca 8090921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 16209378 - 16209435
Alignment:
Q  147 acacacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaat 204  Q
    ||||||||| ||||||| ||  |||||||||||||||||||||| || ||||||||||    
T  16209378 acacactttccaacacactctctttaattggttaaaattcacatgagttccaccaaat 16209435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 1469730 - 1469785
Alignment:
Q  137 acacattttaacacac--ttttcaacacattcgatttaattggttaaaattcacat 190  Q
    |||||||||||||||   ||||||||||| || |||||||||||||||||||||||    
T  1469730 acacattttaacacatatttttcaacacactctatttaattggttaaaattcacat 1469785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 6978958 - 6979038
Alignment:
Q  134 aacacacattttaacacacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggtc 214  Q
    |||||||||||||||| | |||||||  ||||   |||||||||||||||||||||| ||  | | |||||||||||||||    
T  6978958 aacacacattttaacaaatttttcaatgcattttctttaattggttaaaattcacatgagtcctatcaaatcatgtgggtc 6979038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 9430297 - 9430230
Alignment:
Q  125 aatggtaaaaacacacattttaacacac--ttttcaacacattcgatttaattggttaaaattcacat 190  Q
    |||| ||| |||||||||| ||||||||  ||||||||| |||| |||| ||||||||||||||||||    
T  9430297 aatgctaataacacacattctaacacacacttttcaacatattctatttgattggttaaaattcacat 9430230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 42094353 - 42094272
Alignment:
Q  134 aacacacattttaacacac--ttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggtc 214  Q
    |||||||||||||||||||  |||||||||||  |  ||| ||||||||||||||||||  |  |||||||||||||||||||    
T  42094353 aacacacattttaacacacacttttcaacacacactctttgattggttaaaattcacat-ggtcccaccaaatcatgtgggtc 42094272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 39090369 - 39090445
Alignment:
Q  137 acacattttaacaca--cttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgg 211  Q
    |||||||||||| ||  |||||||||||| || |||| |||| |||||||| | || || |||||||||||||||||    
T  39090369 acacattttaacccatacttttcaacacaatctattttattgcttaaaatttatatgagttccaccaaatcatgtgg 39090445  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 37341200 - 37341294
Alignment:
Q  118 tttgaggaatggtaaaaacacacattttaacacacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggtct 215  Q
    ||||||||||| ||| |||||||||||||||||||||| ||  ||||||  ||| ||| ||||||||||||||  | |||||||||||||||||||||    
T  37341200 tttgaggaatgttaacaacacacattttaacacactttcca--acattctttttgattagttaaaattcacat-gggtccaccaaatcatgtgggtct 37341294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 3901656 - 3901566
Alignment:
Q  121 gaggaatggtaaaaacacacatttta-acacacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtg 210  Q
    |||||||| ||| |||| |||||| | ||||||||||||||||| ||  ||| ||||||||||||||||||  |  |||||||||||||||    
T  3901656 gaggaatgctaacaacatacatttaacacacacttttcaacacactctctttgattggttaaaattcacatgggtcccaccaaatcatgtg 3901566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 40763506 - 40763440
Alignment:
Q  145 taacacacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgg 211  Q
    ||||||||||||||||| | ||  |||||||  ||||||||||| | || |||||||||||||||||    
T  40763506 taacacacttttcaacatactctctttaatttattaaaattcacctgagttccaccaaatcatgtgg 40763440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 3901508 - 3901565
Alignment:
Q  153 ttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtg 210  Q
    ||||||||||||||  ||| ||||||||||||||||||  |  |||||||||||||||    
T  3901508 ttttcaacacattctctttgattggttaaaattcacatgggtcccaccaaatcatgtg 3901565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 36007506 - 36007426
Alignment:
Q  134 aacacacattttaaca--cacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtggg 212  Q
    ||||||||||||||||  ||||||||||||||||   ||| | |||||||||||||||| ||| ||   ||||||||||||    
T  36007506 aacacacattttaacattcacttttcaacacattttctttgagtggttaaaattcacatgagcccccataaatcatgtggg 36007426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 36480681 - 36480753
Alignment:
Q  120 tgaggaatggtaaaaacacacattttaacaca--cttttcaacacattcgatttaattggttaaaattcacat 190  Q
    |||| |||| ||| ||||||||||||||||||  |||| ||||||| ||  ||| ||||||||||||||||||    
T  36480681 tgagaaatgctaacaacacacattttaacacaccctttccaacacactctctttgattggttaaaattcacat 36480753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 11532571 - 11532507
Alignment:
Q  147 acacacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgg 211  Q
    |||||||||  |||||| ||  ||| ||||||||||||||||||  | |||||||||||||||||    
T  11532571 acacactttctaacacactctctttgattggttaaaattcacatgggttccaccaaatcatgtgg 11532507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 19560604 - 19560699
Alignment:
Q  121 gaggaatggtaaaaacacacattttaac--acacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggtc 214  Q
    |||||||| ||| |||| ||||| ||||  ||||||||||| ||| ||| ||| ||||||| ||||||| ||  |  |||||||||||||||||||    
T  19560604 gaggaatgctaacaacatacattctaacgcacacttttcaatacactcgctttgattggttgaaattcatatgggtcccaccaaatcatgtgggtc 19560699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 40669078 - 40669023
Alignment:
Q  134 aacacacattttaacacacttttcaacacattcgatttaattggttaaaattcaca 189  Q
    |||||||||||||||||||||||||||||| ||  ||| |||||||||||||||||    
T  40669078 aacacacattttaacacacttttcaacacactctctttgattggttaaaattcaca 40669023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 40374183 - 40374106
Alignment:
Q  136 cacacattttaacacacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggtc 214  Q
    |||||||||||||||| ||||||| ||  || |||| ||||||||||||||||||  || |||||||||||||||||||    
T  40374183 cacacattttaacacatttttcaatacgctctatttgattggttaaaattcacat-ggccccaccaaatcatgtgggtc 40374106  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 7444269 - 7444351
Alignment:
Q  134 aacacacattttaacacac--ttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggtc 214  Q
    |||||||||||||||||||  |||||||||||||   |||||| |||||||||||| | |    |||||||||||||||||||    
T  7444269 aacacacattttaacacacatttttcaacacattttctttaatcggttaaaattcaaagagttcccaccaaatcatgtgggtc 7444351  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 34437748 - 34437690
Alignment:
Q  134 aacacacattttaacac--acttttcaacacattcgatttaattggttaaaattcacat 190  Q
    |||||||||||||||||  ||||||||||||| ||  ||| ||||||||||||||||||    
T  34437748 aacacacattttaacacgcacttttcaacacactctctttgattggttaaaattcacat 34437690  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 38663639 - 38663721
Alignment:
Q  134 aacacacattttaacacac--ttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggtc 214  Q
    ||||||||||||||||||   ||||||||||| ||  ||| |||||||| |||||||||| |  |||||||||||| ||||||    
T  38663639 aacacacattttaacacatatttttcaacacactctctttgattggttacaattcacataggtcccaccaaatcatatgggtc 38663721  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 23317934 - 23317979
Alignment:
Q  169 tttaattggttaaaattcacataagctccaccaaatcatgtgggtc 214  Q
    ||||||| ||||||||||||||| |  |||||||||||||||||||    
T  23317934 tttaatttgttaaaattcacataggtcccaccaaatcatgtgggtc 23317979  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 2542828 - 2542772
Alignment:
Q  157 caacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggt 213  Q
    ||||||||||  ||| ||||||||||||||||||    |||||||||||||||||||    
T  2542828 caacacattctctttgattggttaaaattcacatggcttccaccaaatcatgtgggt 2542772  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 26863077 - 26862982
Alignment:
Q  121 gaggaatggtaaaaacacacattttaa--cacacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggtc 214  Q
    |||||||| ||  ||||||||||||||  ||||||||||| || | ||  ||||||||||||||||||||||  |  |||||||||||||||||||    
T  26863077 gaggaatgctagcaacacacattttaatacacacttttcatcaaactctctttaattggttaaaattcacatgggtcccaccaaatcatgtgggtc 26862982  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 49107041 - 49106980
Alignment:
Q  147 acacacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatg 208  Q
    ||||||||||||||||| ||  ||| ||||||||||||||||||| |  |||||||||||||    
T  49107041 acacacttttcaacacactctctttgattggttaaaattcacataggtcccaccaaatcatg 49106980  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 5443680 - 5443602
Alignment:
Q  134 aacacacattttaacacac--ttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgg 211  Q
    |||||||||| ||||||||  ||||||||| | |   ||| |||||||||||||||||| ||||||||||||| ||||||    
T  5443680 aacacacattctaacacacatttttcaacatactttctttgattggttaaaattcacat-agctccaccaaattatgtgg 5443602  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 10056787 - 10056692
Alignment:
Q  121 gaggaatggtaaaaacacacattttaacac--acttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggtc 214  Q
    |||||||| ||| |||||||||| ||||||  ||||||||||||| ||  ||||||| |||||||| || ||  |  || ||||||||||||||||    
T  10056787 gaggaatgctaacaacacacattctaacacgcacttttcaacacactctctttaattagttaaaatccatatgggtccctccaaatcatgtgggtc 10056692  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 12275728 - 12275784
Alignment:
Q  134 aacacacattttaacacacttttcaacacattcgatttaattggttaaaattcacat 190  Q
    |||||||||| ||||||||||| ||||||| ||  || |||||||||||| ||||||    
T  12275728 aacacacattctaacacactttccaacacactctcttcaattggttaaaaatcacat 12275784  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 1473586 - 1473685
Alignment:
Q  117 atttgaggaatggtaaaaacacacattttaacacac--ttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggtc 214  Q
    |||||| ||||| ||  |||||||||||||| ||||  ||||||||||| |   ||| ||||||||||||||||||  | ||||||||||||||||||||    
T  1473586 atttgaagaatgctagcaacacacattttaatacacatttttcaacacactatctttgattggttaaaattcacatgggttccaccaaatcatgtgggtc 1473685  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 10730013 - 10729959
Alignment:
Q  133 aaacacacattttaacacacttttcaacacattcgatttaattggttaaaattca 187  Q
    ||||||||||||||||||||||||||||||  ||  ||| || ||||||||||||    
T  10730013 aaacacacattttaacacacttttcaacacgctctctttgatcggttaaaattca 10729959  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 12731718 - 12731623
Alignment:
Q  121 gaggaatggtaaaaacacacattttaacacactttt--caacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggtc 214  Q
    |||||||| ||  |||||| ||| |||||||| |||  ||||||| ||  ||| ||||||||||||| |||||   ||||||||||||||||||||    
T  12731718 gaggaatgctagcaacacatattataacacacattttccaacacactctttttgattggttaaaatttacatagcttccaccaaatcatgtgggtc 12731623  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 35586539 - 35586482
Alignment:
Q  147 acacacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaat 204  Q
    ||||||||||||||||||||  |||||||| |||||||||||||| |  |||||||||    
T  35586539 acacacttttcaacacattctctttaattgattaaaattcacataggacccaccaaat 35586482  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 212
Target Start/End: Complemental strand, 8402640 - 8402549
Alignment:
Q  121 gaggaatggtaaaaacacacattttaacacac--ttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtggg 212  Q
    |||||||| ||  |||||||||||||||||||  ||||||||||| |  |||| ||||||||||| || |||  || |||||||||||||||||    
T  8402640 gaggaatgctagcaacacacattttaacacacacttttcaacacact--atttgattggttaaaactctcatgggccccaccaaatcatgtggg 8402549  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 40176030 - 40175963
Alignment:
Q  147 acacacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggtc 214  Q
    |||||||||| |||||| ||  ||||||||||||||||||||||  |  ||||||||| |||||||||    
T  40176030 acacactttttaacacactccttttaattggttaaaattcacatgggtcccaccaaattatgtgggtc 40175963  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 23848245 - 23848283
Alignment:
Q  125 aatggtaaaaacacacattttaacacacttttcaacaca 163  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  23848245 aatgctaacaacacacattttaacacacttttcaacaca 23848283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 42072654 - 42072731
Alignment:
Q  138 cacattttaacacacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggtct 215  Q
    |||||||||||||||  ||||||||| ||  ||| ||||||||| ||||||||  |  |||||||||||| |||||||    
T  42072654 cacattttaacacacacttcaacacactctctttgattggttaacattcacatgggtcccaccaaatcatatgggtct 42072731  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 3907793 - 3907723
Alignment:
Q  146 aacacactttt--caacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtgggtc 214  Q
    |||||||||||  ||||||||||  ||| ||||||||||||||||||  |  |||||||||||||||||||    
T  3907793 aacacactttttccaacacattctttttgattggttaaaattcacatgggtcccaccaaatcatgtgggtc 3907723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 33029501 - 33029554
Alignment:
Q  151 acttttcaacacattcgatttaattggttaaaattcacataagctccaccaaat 204  Q
    ||||||||||||||||  ||||||| ||||||||||| |||||  |||||||||    
T  33029501 acttttcaacacattctctttaattagttaaaattcatataagtcccaccaaat 33029554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 42419992 - 42420056
Alignment:
Q  121 gaggaatggtaaaaacacacattttaacacac--ttttcaacacattcgatttaattggttaaaa 183  Q
    |||||||| ||| ||||| |||| ||||||||  ||||||||||||||  |||||||||||||||    
T  42419992 gaggaatgctaacaacactcattctaacacacatttttcaacacattctctttaattggttaaaa 42420056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 212
Target Start/End: Complemental strand, 8343 - 8251
Alignment:
Q  121 gaggaatggtaaaaacacacatttta-acacacttttcaacacattcgatttaattggttaaaattcacataagctccaccaaatcatgtggg 212  Q
    |||||||| ||| |||| |||||| | |||||||||||||| |||||  ||| ||||| |||||||||||| |   ||||||||| |||||||    
T  8343 gaggaatgctaacaacatacatttaacacacacttttcaacgcattctttttgattggctaaaattcacatgaatcccaccaaattatgtggg 8251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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