View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085_1D_low_56 (Length: 218)
Name: NF2085_1D_low_56
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 44377646 - 44377444
Alignment:
| Q |
1 |
aaaagtggcgtgctatgtctcagacgacggtgcagctatgctaacatttgaagccctttccgaaacttcagagtttgcaagaaaatgggttccattctgc |
100 |
Q |
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| T |
44377646 |
aaaagtggcgtgctatgtctcagacgacggtgcagctatgctaacatttgaagccctttcagaaacttcagagtttgcaagaaaatgggttccattctgc |
44377547 |
T |
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| Q |
101 |
aagaagttcagcatcgaaccacgggctcctgagtggtattttgctcagaaggttgactatctaaaagacaaagtggacgcggctttcatcaaggagcgtc |
200 |
Q |
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| T |
44377546 |
aagaagttcagcattgaaccgcgggctcctgagtggtattttgctcagaaggttgactatctaaaagacaaagtggacgcggctttcatcaaggagcgtc |
44377447 |
T |
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| Q |
201 |
gtg |
203 |
Q |
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||| |
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| T |
44377446 |
gtg |
44377444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 13826346 - 13826201
Alignment:
| Q |
11 |
tgctatgtctcagacgacggtgcagctatgctaacatttgaagccctttccgaaacttcagagtttgcaagaaaatgggttccattctgcaagaagttca |
110 |
Q |
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| T |
13826346 |
tgctatgtttctgatgacggcgccgctatgttgacatttgaagctcttgctgaaacatcagagtttgcaagaaaatgggttccattcaccaagaagtata |
13826247 |
T |
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| Q |
111 |
gcatcgaaccacgggctcctgagtggtattttgctcagaaggttga |
156 |
Q |
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| T |
13826246 |
atattgaaccccgcgcacccgagtggtactttgcacagaagattga |
13826201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 9477841 - 9477932
Alignment:
| Q |
14 |
tatgtctcagacgacggtgcagctatgctaacatttgaagccctttccgaaacttcagagtttgcaagaaaatgggttccattctgcaagaa |
105 |
Q |
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| T |
9477841 |
tatgtctctgatgatggtgctgctatgttgacatttgaagctcttgccgagacatcagaatttgcaaggaaatgggttcctttctgcaagaa |
9477932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 142
Target Start/End: Complemental strand, 1177510 - 1177400
Alignment:
| Q |
32 |
gcagctatgctaacatttgaagccctttccgaaacttcagagtttgcaagaaaatgggttccattctgcaagaagttcagcatcgaaccacgggctcctg |
131 |
Q |
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| T |
1177510 |
gcagcaatgttaacatttgaggcattatctgaaacttctgaatttgcaaggaaatgggttcctttttgtaagaagttcaacattgaacctagagctccag |
1177411 |
T |
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| Q |
132 |
agtggtatttt |
142 |
Q |
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| T |
1177410 |
aatggtatttt |
1177400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 43436291 - 43436252
Alignment:
| Q |
68 |
tcagagtttgcaagaaaatgggttccattctgcaagaagt |
107 |
Q |
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| T |
43436291 |
tcagagtttgcgagaaaatgggttcctttctgcaagaagt |
43436252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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