View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085_1D_low_57 (Length: 218)
Name: NF2085_1D_low_57
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 38126542 - 38126716
Alignment:
| Q |
17 |
acctataacatgtaggattagttcacttattttaatgcacattccttaagttttatttctccatatttttgagaaatatttattaaatatatgcatgcct |
116 |
Q |
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| T |
38126542 |
acctataacatgtaggattagttcacttattttaattc--------------ttatttctccatatttttgagaaatatttattaaatatatgcatgcct |
38126627 |
T |
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| Q |
117 |
tattagttggaatgcatttgacactgattgtttaattatttggttatatataggttctgcttttttctttgaatgatatatacaggttc |
205 |
Q |
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| T |
38126628 |
tattagttggaatgcatttgacactgattgtttaattatttggttatatataggttctgcttttttctttgaatgatatatataggttc |
38126716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 39708558 - 39708616
Alignment:
| Q |
45 |
attttaatgcacattccttaagttttatttctccata-tttttgagaaatatttattaa |
102 |
Q |
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| T |
39708558 |
attttaatgcacattccttaagtcttatttctccatattttttcagaaatgtttattaa |
39708616 |
T |
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