View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085_1D_low_6 (Length: 497)
Name: NF2085_1D_low_6
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 24 - 497
Target Start/End: Original strand, 40233094 - 40233565
Alignment:
| Q |
24 |
caacgtatgagaacaatacatatgcagatgacggtattgtggtaacacacatgtacagtttatattggtcaagtaaacttgtctgaaagactagcatatc |
123 |
Q |
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| T |
40233094 |
caacgtatgagaacaatacatatgcagatgacggtattgtggtaacacacatgtacagtttatattggtcaagtaaacttgtctgaaagactagcatatc |
40233193 |
T |
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| Q |
124 |
atttatgcagcctcatgttttgtcaataaatcccagtannnnnnnnaactgaaagctccactgcttgtaaacagtgcaagtatgtagataagaatggaaa |
223 |
Q |
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| T |
40233194 |
atttatgcagcctcatgttttgtcaataaatcccagtattttttttaactgaaagctcaactgcttgtaaacagtgcaagtatgtagataagaatggaaa |
40233293 |
T |
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| Q |
224 |
gcatagttggtctatgctgaaaaacttaagcagtggtagtgaatagtgattgttcagaataccagggttaaaaactgaattgcaaaagaaattgacatat |
323 |
Q |
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| T |
40233294 |
gcatagttggtctatgctggaaaactt--gcggtggtagtgaatagtgattgttcagaataccagggttaaaaactgaattgcaaaagaaattgacatat |
40233391 |
T |
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| Q |
324 |
ctttttcttgttttagctggtcgaacgagtgtgtcttgacccttgcaccataccatcactaaaagctcctcctgagcttaggaaaaagcggatgattttt |
423 |
Q |
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| T |
40233392 |
ctttttcttgttttagctggtcgaacgagtgtgtcttgacccttgcaccataccatcactaaaagctcctcctgagcttaggaaaaagcggatgattttt |
40233491 |
T |
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| Q |
424 |
cttgcttagtatcaactaaattctcatgttttttggacagatcatgcctcctaaacaaacaagtaagaatgtca |
497 |
Q |
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| T |
40233492 |
cttgcttagtatcaactaaattctcgtgttttttggacagatcatgcctcctaaacaaacaagtaagaatgtca |
40233565 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 17463290 - 17463156
Alignment:
| Q |
26 |
acgtatgagaacaatacatatgcagatgacggtattgtggtaacacacatgtacagtttatattggtcaagtaaacttgtctgaaagactagcatatcat |
125 |
Q |
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||||||||||||| | | ||||||||||| ||| || ||||| ||| ||| || ||||| || ||| ||| |||||||||||||||| |||||||||| |
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| T |
17463290 |
acgtatgagaacattccgtatgcagatgagggtgatgaggtaagacagttgtgcaatttatgttcgtcgagttaacttgtctgaaagacaagcatatcat |
17463191 |
T |
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| Q |
126 |
ttatgcagcctcatgttttgtcaataaatcccagt |
160 |
Q |
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| T |
17463190 |
ttatacatcctcatctattgtcagtaaattccagt |
17463156 |
T |
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