View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085_1D_low_62 (Length: 212)
Name: NF2085_1D_low_62
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 6 - 209
Target Start/End: Original strand, 845488 - 845691
Alignment:
| Q |
6 |
atttttgtaatacatttatctttattattcttaaaatcaggtgactacaggggttgaaatggataatacttgtgtgagagatgtccaaattatggatgag |
105 |
Q |
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| T |
845488 |
atttttgtaatacatttatctttattattcttaaaatcaggtgactacaggggttgaaatggataatacttgtgtgagagatgtccaaattacggatgag |
845587 |
T |
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| Q |
106 |
acaaagtcggatataagaagtaccaatgcagctacagtcgacgatgaagttacaaaaagttctgattcaaaaaggaaactacattcttgtccaactccaa |
205 |
Q |
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| T |
845588 |
acaaagtcggatataagaagtaccaatgcagctacagtcgacgatgaagttacaaaaagttctgattcaaaaaggaaactacattcttgtccaactacaa |
845687 |
T |
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| Q |
206 |
actc |
209 |
Q |
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|||| |
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| T |
845688 |
actc |
845691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 10456011 - 10456108
Alignment:
| Q |
30 |
ttattcttaaaatcaggtgactacaggggttgaaatggataatacttgtgtgagagatgtccaaattatggatgagacaaagtcggatataagaagta |
127 |
Q |
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| T |
10456011 |
ttattcttaaaatcaggtgacaaaagggcttcaaacggataatacatgtgcaagagatgtacaaactatagatgacacacagtcgaatataagaagta |
10456108 |
T |
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