View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085_1D_low_65 (Length: 208)
Name: NF2085_1D_low_65
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 5e-98; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 3179762 - 3179578
Alignment:
| Q |
1 |
tataaagaaacatggtagtatttagatagtatctcttgaatttccccaacaaatatatttcattccctttatttcttgaacataacatcatcaccttctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3179762 |
tataaagaaacatggtagtatttagatagtatctcttgaatttccccaacaaatatatttcattccctttatttcttgaacataacatcatcaccttctc |
3179663 |
T |
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| Q |
101 |
cctgttacatgaaaatgactgatattggtatcctaacagcatgtttatcagacacccaagtgagagaaccctgagcgtaagtatt |
185 |
Q |
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| T |
3179662 |
cctgttacatgaaaatgactgatattggtatcctaacagcatgtttatcagacacccaagtgagagaaccctgagcataagtatt |
3179578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 3239072 - 3239262
Alignment:
| Q |
1 |
tataaagaaacatggtagtatttagatagtatctcttgaatttccccaacaaatatatttcattccctttatttcttgaacataacatcatcaccttctc |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| |||| |
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| T |
3239072 |
tataaagaaacatggtagtatttagttagtatctcttgaatttccccaacaaatatatttcattccctttatttcttgaacatcatatagtcaccctctc |
3239171 |
T |
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| Q |
101 |
cc------tgttacatgaaaatgactgatattggtatcctaacagcatgtttatcagacacccaagtgagagaaccctgagcgtaagtatt |
185 |
Q |
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| T |
3239172 |
ccttcatatatcacttgaaaataacagatattggtatcctaacagcatgtttatcagaaacccaagtgagagaaccctgagcataagtatt |
3239262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 110 - 185
Target Start/End: Original strand, 3244126 - 3244201
Alignment:
| Q |
110 |
tgaaaatgactgatattggtatcctaacagcatgtttatcagacacccaagtgagagaaccctgagcgtaagtatt |
185 |
Q |
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| T |
3244126 |
tgaaaatgactgatattggtatcctaacagcatgtttatcagacacccaagtgagagaaccctgagcataagtatt |
3244201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 52 - 174
Target Start/End: Original strand, 3230324 - 3230452
Alignment:
| Q |
52 |
aatatatttcattccctttatttcttgaacataacatcatcaccttctccctg------ttacatgaaaatgactgatattggtatcctaacagcatgtt |
145 |
Q |
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|||||||| ||||||||||||||||||||||| | ||||||||| ||||| | | || |||||||||| ||||| || | |||||||||||||| |
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| T |
3230324 |
aatatattccattccctttatttcttgaacatcatatcatcaccctctccattcatatatcacttgaaaatgacagatatcggcaccctaacagcatgtt |
3230423 |
T |
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| Q |
146 |
tatcagacacccaagtgagagaaccctga |
174 |
Q |
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| T |
3230424 |
tatcagacacccaagtgagggagccctga |
3230452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 3220157 - 3220221
Alignment:
| Q |
112 |
aaaatgactgatattggtatcctaacagcatgtttatcagacacccaagtgagagaaccctgagc |
176 |
Q |
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|||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3220157 |
aaaatgacagatatagggatcctaacagcatgtttatcagacacccaagtgagagagccctgagc |
3220221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 3225142 - 3225204
Alignment:
| Q |
112 |
aaaatgactgatattggtatcctaacagcatgtttatcagacacccaagtgagagaaccctga |
174 |
Q |
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|||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
3225142 |
aaaatgacagatattgggatcctaacagcatgtctatcagacacccaagtgagagagccctga |
3225204 |
T |
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