View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2085_1D_low_68 (Length: 205)

Name: NF2085_1D_low_68
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2085_1D_low_68
NF2085_1D_low_68
[»] scaffold0107 (2 HSPs)
scaffold0107 (10-203)||(31065-31258)
scaffold0107 (10-203)||(39398-39595)
[»] chr8 (20 HSPs)
chr8 (10-203)||(15319466-15319659)
chr8 (10-203)||(15499835-15500028)
chr8 (10-203)||(271667-271860)
chr8 (10-203)||(644060-644253)
chr8 (10-203)||(829795-829988)
chr8 (10-203)||(13662572-13662764)
chr8 (10-203)||(24717170-24717363)
chr8 (10-203)||(22006565-22006760)
chr8 (10-203)||(13721235-13721424)
chr8 (10-203)||(3431588-3431778)
chr8 (12-201)||(39114875-39115064)
chr8 (10-203)||(16873358-16873547)
chr8 (12-203)||(4233662-4233849)
chr8 (53-203)||(17501946-17502098)
chr8 (11-203)||(24239419-24239607)
chr8 (100-151)||(16039433-16039485)
chr8 (100-150)||(274095-274146)
chr8 (100-150)||(641703-641754)
chr8 (100-150)||(827509-827560)
chr8 (100-155)||(24386296-24386352)
[»] scaffold0076 (1 HSPs)
scaffold0076 (10-203)||(38859-39052)
[»] chr7 (22 HSPs)
chr7 (10-203)||(27101944-27102137)
chr7 (10-203)||(27109292-27109485)
chr7 (10-203)||(7829795-7829988)
chr7 (10-203)||(38784036-38784229)
chr7 (10-203)||(7822484-7822677)
chr7 (10-203)||(27176189-27176382)
chr7 (10-203)||(370847-371037)
chr7 (10-201)||(32494510-32494700)
chr7 (10-201)||(1937308-1937496)
chr7 (10-201)||(15951098-15951285)
chr7 (10-203)||(13758130-13758319)
chr7 (10-203)||(15927328-15927517)
chr7 (10-203)||(14251205-14251394)
chr7 (13-203)||(18980331-18980516)
chr7 (12-203)||(28720471-28720655)
chr7 (53-203)||(16383517-16383667)
chr7 (100-155)||(2028568-2028624)
chr7 (100-155)||(15525118-15525174)
chr7 (100-155)||(111819-111874)
chr7 (100-150)||(3894682-3894732)
chr7 (100-189)||(18364484-18364573)
chr7 (100-155)||(2190728-2190784)
[»] chr6 (24 HSPs)
chr6 (10-203)||(16376680-16376873)
chr6 (10-203)||(16384004-16384197)
chr6 (10-203)||(22226045-22226238)
chr6 (10-203)||(10488455-10488648)
chr6 (10-203)||(16556446-16556641)
chr6 (10-203)||(16633002-16633197)
chr6 (10-203)||(35015465-35015655)
chr6 (34-203)||(16649702-16649871)
chr6 (10-203)||(19983599-19983789)
chr6 (10-203)||(16231652-16231841)
chr6 (10-203)||(25904901-25905096)
chr6 (10-203)||(23977529-23977718)
chr6 (10-203)||(18087130-18087318)
chr6 (53-201)||(33314557-33314705)
chr6 (78-203)||(19168630-19168755)
chr6 (11-199)||(16136069-16136254)
chr6 (46-203)||(31467899-31468056)
chr6 (10-155)||(13621101-13621242)
chr6 (11-167)||(21931026-21931179)
chr6 (102-199)||(19174945-19175042)
chr6 (100-155)||(15735305-15735361)
chr6 (99-151)||(25650886-25650938)
chr6 (100-155)||(18776803-18776858)
chr6 (100-169)||(18003046-18003116)
[»] chr5 (16 HSPs)
chr5 (10-203)||(22883391-22883584)
chr5 (10-203)||(35581792-35581985)
chr5 (10-203)||(36990077-36990270)
chr5 (10-203)||(21932688-21932881)
chr5 (10-203)||(21938858-21939051)
chr5 (10-203)||(1219827-1220018)
chr5 (10-203)||(9730690-9730880)
chr5 (10-201)||(10778277-10778464)
chr5 (13-203)||(23514318-23514507)
chr5 (12-203)||(28901972-28902163)
chr5 (12-203)||(28938367-28938558)
chr5 (99-203)||(21297531-21297635)
chr5 (99-154)||(21109544-21109599)
chr5 (153-203)||(21399031-21399081)
chr5 (99-153)||(21311074-21311128)
chr5 (100-155)||(21204574-21204630)
[»] chr3 (22 HSPs)
chr3 (10-203)||(1468046-1468239)
chr3 (10-203)||(49232193-49232385)
chr3 (10-203)||(16820897-16821088)
chr3 (10-203)||(18910753-18910942)
chr3 (1-201)||(28557807-28558006)
chr3 (10-203)||(54038588-54038778)
chr3 (11-203)||(16934282-16934481)
chr3 (10-203)||(17956292-17956482)
chr3 (13-203)||(30206997-30207188)
chr3 (12-203)||(40039206-40039393)
chr3 (11-203)||(19430689-19430878)
chr3 (99-169)||(8604643-8604713)
chr3 (99-153)||(15517475-15517529)
chr3 (153-203)||(50351050-50351100)
chr3 (100-169)||(13326918-13326987)
chr3 (100-155)||(16261108-16261164)
chr3 (99-150)||(3992204-3992255)
chr3 (100-155)||(11061553-11061608)
chr3 (100-155)||(11882596-11882651)
chr3 (10-49)||(45581384-45581422)
chr3 (100-150)||(54423666-54423716)
chr3 (100-155)||(53770687-53770743)
[»] chr2 (25 HSPs)
chr2 (10-203)||(11231645-11231838)
chr2 (10-203)||(24686088-24686281)
chr2 (10-203)||(28776114-28776307)
chr2 (10-203)||(22513492-22513685)
chr2 (10-203)||(12728146-12728341)
chr2 (43-203)||(34824205-34824365)
chr2 (10-203)||(8943606-8943795)
chr2 (10-203)||(12636175-12636364)
chr2 (10-203)||(12641949-12642138)
chr2 (10-203)||(22283713-22283903)
chr2 (10-203)||(3798910-3799099)
chr2 (10-203)||(22274480-22274670)
chr2 (10-203)||(42178276-42178457)
chr2 (12-203)||(22775480-22775669)
chr2 (12-203)||(22780858-22781047)
chr2 (12-201)||(16935197-16935383)
chr2 (12-201)||(17005857-17006043)
chr2 (99-155)||(20273347-20273403)
chr2 (109-203)||(24383426-24383520)
chr2 (14-203)||(24087662-24087847)
chr2 (99-199)||(45617782-45617882)
chr2 (100-169)||(21274600-21274670)
chr2 (99-155)||(25876463-25876519)
chr2 (100-169)||(19659679-19659748)
chr2 (100-155)||(9653438-9653493)
[»] scaffold0213 (1 HSPs)
scaffold0213 (10-203)||(28918-29111)
[»] chr1 (9 HSPs)
chr1 (10-203)||(17004394-17004587)
chr1 (10-203)||(38055398-38055590)
chr1 (10-203)||(18060065-18060258)
chr1 (10-203)||(44035278-44035471)
chr1 (10-203)||(21859049-21859239)
chr1 (10-203)||(21650347-21650540)
chr1 (10-203)||(17148328-17148516)
chr1 (12-203)||(16656419-16656610)
chr1 (100-150)||(35054433-35054483)
[»] scaffold0023 (1 HSPs)
scaffold0023 (10-203)||(154314-154506)
[»] scaffold0016 (2 HSPs)
scaffold0016 (10-203)||(162487-162680)
scaffold0016 (10-203)||(166565-166755)
[»] chr4 (13 HSPs)
chr4 (10-203)||(18168728-18168919)
chr4 (10-203)||(7132372-7132561)
chr4 (10-203)||(20000483-20000672)
chr4 (10-201)||(25119516-25119704)
chr4 (10-203)||(5682835-5683025)
chr4 (53-203)||(15213937-15214087)
chr4 (11-203)||(54363570-54363759)
chr4 (53-203)||(17375607-17375757)
chr4 (17-189)||(13043062-13043231)
chr4 (100-155)||(30233061-30233116)
chr4 (100-155)||(52266073-52266128)
chr4 (101-155)||(12837742-12837796)
chr4 (101-155)||(15851909-15851963)
[»] scaffold0184 (1 HSPs)
scaffold0184 (10-200)||(31588-31775)
[»] scaffold0078 (1 HSPs)
scaffold0078 (10-200)||(41069-41256)
[»] scaffold0034 (3 HSPs)
scaffold0034 (10-201)||(79462-79652)
scaffold0034 (10-194)||(40290-40471)
scaffold0034 (10-194)||(45773-45954)
[»] scaffold0686 (1 HSPs)
scaffold0686 (10-203)||(6391-6581)
[»] scaffold0039 (1 HSPs)
scaffold0039 (10-201)||(19365-19555)
[»] scaffold0077 (1 HSPs)
scaffold0077 (10-201)||(15930-16118)
[»] scaffold0342 (2 HSPs)
scaffold0342 (10-201)||(758-946)
scaffold0342 (100-150)||(5594-5644)
[»] scaffold0456 (2 HSPs)
scaffold0456 (11-203)||(1839-2028)
scaffold0456 (11-203)||(8984-9173)
[»] scaffold0103 (1 HSPs)
scaffold0103 (10-203)||(33264-33454)
[»] scaffold0452 (1 HSPs)
scaffold0452 (12-201)||(3065-3251)
[»] scaffold1204 (1 HSPs)
scaffold1204 (12-203)||(367-553)
[»] scaffold0409 (2 HSPs)
scaffold0409 (12-205)||(1622-1809)
scaffold0409 (12-205)||(9877-10064)
[»] scaffold0269 (1 HSPs)
scaffold0269 (87-201)||(16218-16332)
[»] scaffold0521 (1 HSPs)
scaffold0521 (10-189)||(10726-10902)
[»] scaffold0251 (1 HSPs)
scaffold0251 (100-155)||(13939-13995)
[»] scaffold0447 (2 HSPs)
scaffold0447 (101-169)||(4202-4270)
scaffold0447 (101-169)||(8816-8884)
[»] scaffold0383 (1 HSPs)
scaffold0383 (101-169)||(6810-6878)
[»] scaffold0175 (1 HSPs)
scaffold0175 (100-155)||(14595-14651)
[»] scaffold0021 (1 HSPs)
scaffold0021 (78-150)||(87949-88021)
[»] scaffold0047 (1 HSPs)
scaffold0047 (11-49)||(77074-77111)
[»] scaffold0125 (1 HSPs)
scaffold0125 (153-202)||(28322-28371)
[»] scaffold0574 (1 HSPs)
scaffold0574 (100-155)||(10059-10115)
[»] scaffold0303 (1 HSPs)
scaffold0303 (100-155)||(551-607)
[»] scaffold0004 (1 HSPs)
scaffold0004 (100-155)||(187081-187137)


Alignment Details
Target: scaffold0107 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 31258 - 31065
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  31258 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 31159  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31158 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 31065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 39595 - 39398
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaacttt----ttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaattt 105  Q
    ||||||||||||||||||||| ||||||||    |  ||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  39595 gtgttcatgtgaaggaccaaagtgaactttgatatatatatatatatggttgttgactgaaattttgtaattgttggatgaattgaacctatgagaattt 39496  T
Q  106 ctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39495 ctattttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 39398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 15319466 - 15319659
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  15319466 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 15319565  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15319566 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 15319659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 15499835 - 15500028
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  15499835 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 15499934  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15499935 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 15500028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 271667 - 271860
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  271667 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 271766  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  271767 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaatgagtgat 271860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 644253 - 644060
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  644253 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 644154  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  644153 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacggatttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 644060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 829988 - 829795
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  829988 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 829889  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  829888 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaatgagtgat 829795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 13662572 - 13662764
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13662572 gtgttcatgtgaaggaccaaaatgaactttt-gatatatatatggttgttgattgaaattttgttattgttggatgaattgaacctatgagaatttctgt 13662670  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13662671 tttaatgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 13662764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 24717170 - 24717363
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| || ||||||||||||    
T  24717170 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacataggagaatttctgt 24717269  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  24717270 tttcatattgtggttgtgttagttgagtcgtttgggagaaaacgggtttttcatgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 24717363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 22006565 - 22006760
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaacttt--ttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttct 107  Q
    ||||||||||||||||||||| ||||||||  |  ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||    
T  22006565 gtgttcatgtgaaggaccaaagtgaactttgatatatatatatatggttgttgactgaaaatttgttattgttggatgaattgaacctatgagaatttct 22006664  T
Q  108 gttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  22006665 gttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgtcaataagtgat 22006760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 13721235 - 13721424
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||| ||||||||     ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  13721235 gtgttcatgtgaaggaccaaattgaactttg----atatatatggttgttgactgaaattttgttattgttggatgaattgaacctaggagaatttctgt 13721330  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13721331 tttcatgttgtggttatgttagttgagttgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 13721424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 3431588 - 3431778
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  3431588 gtgttcatgtgaaggaccaaaatgaacttttg---atatatatggttgttgattgaaattttgttattgttggatgaattgaacctaggagaatttctgt 3431684  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  3431685 tttcatgttgtggttatgttagttgagttgtttgggagaaaacggatttttcgtgtgaaatgttgatgtttaagcattttcgccaataagtgat 3431778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 39115064 - 39114875
Alignment:
Q  12 gttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttt 111  Q
    ||||||||||||||||||||||||||||| |||||||||| |||| |||| ||||| |||||||| |||| ||||||||||||||| ||||||| |||||    
T  39115064 gttcatgtgaaggaccaaaatgaactttt-gatatatatagggtttttgactgaaactttgttattgttgaatgaattgaacctataagaatttatgttt 39114966  T
Q  112 tcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttt-tgtgtgaaatgtcgatgtttaagcgttttcgccaataagtg 201  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||    
T  39114965 tcatgttgtggttgtgttagttgagtcgtttgggagaaaacgggtttttccgtgtgaaatgtcgatgtttaagtgttttcgccaataagtg 39114875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 16873358 - 16873547
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||| ||||||||     |||| |||||||||||| |||||||||||||| |||||||| |||||||||| ||| |||||| |    
T  16873358 gtgttcatgtgaaggaccaaattgaactttg----atatttatggttgttgactgaaattttgttattgttggatggattgaacctaggaggatttctat 16873453  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  16873454 tttcatgttgtggttatgttagttgagttatttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttatgcgttttcgccaataagtgat 16873547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 4233849 - 4233662
Alignment:
Q  12 gttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttt 111  Q
    |||||||||||||||||||||||| ||| |    || ||  ||||||||| |||| ||||| | | |||||||||||||||||||  |||| || |||||    
T  4233849 gttcatgtgaaggaccaaaatgaattttgt----tacatgaggttgttgactgaatttttgatgttgttggatgaattgaacctagaagaacttatgttt 4233754  T
Q  112 tcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||| |||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  4233753 tcatgttgtggttgtgttagttgagttgtttgggagaaaaccggttttttgtgtaaaatgtcgatgtttaagcgttttcaccaataagtgat 4233662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 53 - 203
Target Start/End: Complemental strand, 17502098 - 17501946
Alignment:
Q  53 ggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaac 152  Q
    ||||||||| |||| ||||| | | |||||||||||||||||||  ||||||| || ||||||||||||||  |||||||||||||||||||||||||||    
T  17502098 ggttgttgactgaatttttgatgttgttggatgaattgaacctagaagaatttatggtttcatgttgtggtcgtgttagttgagtcgtttgggagaaaac 17501999  T
Q  153 gggtttttt--gtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||  |||| |||||||||||||||||| |||| |||| ||||||||    
T  17501998 gggtttttttcgtgtaaaatgtcgatgtttaagcatttttgccactaagtgat 17501946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 24239607 - 24239419
Alignment:
Q  11 tgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgtt 110  Q
    ||||||||||||||||||||||||| ||| |    |  ||  ||||||||| |||  |||||  || |||| ||||||||||||||  ||||||| ||||    
T  24239607 tgttcatgtgaaggaccaaaatgaattttgt----tgcatgaggttgttgactgagtttttgacatggttgaatgaattgaacctagaagaatttatgtt 24239512  T
Q  111 ttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||| ||||||| ||| |||||||||||||||  |||||| |    ||||||||||||||||||||||| |||||||||||||    
T  24239511 ttcatgttgtggttgtgttagtcgagacgtttgggagaaaacaagtttttcggaataaatgtcgatgtttaagcgtttttgccaataagtgat 24239419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 16039433 - 16039485
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcg-tttgggagaaaa 151  Q
    ||||||||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  16039433 gaatttctgtttttatgttgtggttatgttagtcgagtcgttttgggagaaaa 16039485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 274146 - 274095
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcg-tttgggagaaa 150  Q
    ||||||||||||| |||||||||||||| |||| |||||| |||||||||||    
T  274146 gaatttctgtttttatgttgtggttatgctagtcgagtcgttttgggagaaa 274095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 641703 - 641754
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcg-tttgggagaaa 150  Q
    ||||||||||||| |||||||||||||| |||| |||||| |||||||||||    
T  641703 gaatttctgtttttatgttgtggttatgctagtcgagtcgttttgggagaaa 641754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 827509 - 827560
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcg-tttgggagaaa 150  Q
    ||||||||||||| |||||||||||||| |||| |||||| |||||||||||    
T  827509 gaatttctgtttttatgttgtggttatgctagtcgagtcgttttgggagaaa 827560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 24386296 - 24386352
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcg-tttgggagaaaacggg 155  Q
    ||||||||||||| ||||||||||||||  |||  ||||| ||||||||||||||||    
T  24386296 gaatttctgtttttatgttgtggttatgacagtcaagtcgttttgggagaaaacggg 24386352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 39052 - 38859
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  39052 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 38953  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38952 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 38859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 178; Significance: 3e-96; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 27101944 - 27102137
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  27101944 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 27102043  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27102044 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 27102137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 27109292 - 27109485
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  27109292 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 27109391  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27109392 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 27109485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 7829988 - 7829795
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  7829988 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 7829889  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7829888 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacggatttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 7829795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 38784036 - 38784229
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  38784036 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 38784135  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38784136 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacggatttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 38784229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 7822677 - 7822484
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||    
T  7822677 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacttatgagaatttctgt 7822578  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7822577 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacggatttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 7822484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 27176382 - 27176189
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  27176382 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 27176283  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27176282 tttcacgttgtggttatgttagttgattcgtttgggagaaaacggatttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 27176189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 371037 - 370847
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  371037 gtgttcatgtgaaggaccaaaatgaacttttg---atatatatggttgttgattgaaattttgttattgttggatgaattgaacctaggagaatttctgt 370941  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  370940 tttcatgttgtggttatgttagttgagttgtttgggagaaaacgggtttttcgtgtgaaatgttgatgtttaagcattttcgccaataagtgat 370847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 32494510 - 32494700
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||||||||||||||||  |||||||||||    
T  32494510 gtgttcatgtgaaggaccaaaatgaactttt-gatatatatagggttgttgactgaaattttgttattgttggatgaattgaacctagaagaatttctgt 32494608  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtg 201  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  32494609 tttcatgttgtggttgtgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgctttcgccaataagtg 32494700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 1937308 - 1937496
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  1937308 gtgttcatgtgaaggaccaaaatgaacttttg---atatatatggttgttgattgaaattttgttattgttggatgaattgaacctaggagaatttctgt 1937404  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtg 201  Q
    |||||| |||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  1937405 tttcatattgtggttgtgttagttgagtcgtttgagagaaaacgggtttttcgtgtgaaatgtcgatgcttaagcgttttcgccaataagtg 1937496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 15951098 - 15951285
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||  |||||||     |||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  15951098 gtgttcatgtgaaggaccaaatcgaacttt----gatatttatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 15951193  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtg 201  Q
    ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15951194 ttttatgttgtggttatgttagttgagtcgtttgggagaaaatgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtg 15951285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 13758319 - 13758130
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||| ||||||||     |||| |||||||||||| |||||||||||||| |||||||| |||||||||| ||||||||||||    
T  13758319 gtgttcatgtgaaggaccaaattgaactttg----atatttatggttgttgactgaaattttgttattgttggatggattgaacctaggagaatttctgt 13758224  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  13758223 tttcatgttgtggttatgttagttgagttgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttatgcgttttcgccaataagtgat 13758130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 15927517 - 15927328
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||| ||||||||     |||| |||||| ||||| |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  15927517 gtgttcatgtgaaggaccaaattgaactttg----atatttatggtggttgactgaaattttgttattgttggatgaattgaacctaggagaatttctgt 15927422  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  15927421 tttcatgttgtggttatgttagttgagttgtttgggagaaaacgggtttttcgtgtgaaatgtcaatgtttaagcgttttcgccaataagtgat 15927328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 14251205 - 14251394
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||| ||||||||     |||| |||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  14251205 gtgttcatgtgaaggaccaaattgaactttg----atatttatggttgttgactgaaattttgttattgttggatgaattgaacctaggagaatttctgt 14251300  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    || |||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  14251301 ttccatgttgtggttatgtcagttgagttgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgtcaataagtgat 14251394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 18980331 - 18980516
Alignment:
Q  13 ttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgtttt 112  Q
    |||||||||||||||||| ||||||||     |||| |||||||||||| |||||||||||||| ||||||||||||||| ||| |||||||||||||||    
T  18980331 ttcatgtgaaggaccaaattgaactttg----atatttatggttgttgactgaaattttgttattgttggatgaattgaatctaggagaatttctgtttt 18980426  T
Q  113 catgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||    
T  18980427 catgttgtggttatgttagttgagttg-ttgggagaaaacgggtttttcatgtgaaatgtcgatgtttaagcgttctcgccaataagtgat 18980516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 28720655 - 28720471
Alignment:
Q  12 gttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttt 111  Q
    |||||||||||||| ||| ||||||||||    ||||||| ||||||||| |||||||||| | | |||||||||||||||||||  |||||||||||||    
T  28720655 gttcatgtgaaggatcaatatgaacttttg---atatataaggttgttgactgaaattttgatgttgttggatgaattgaacctagaagaatttctgttt 28720559  T
Q  112 tcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||||| ||    ||||||||||||||||||||||||||||||||||||    
T  28720558 tcacgttgtggttgtgttagttgagtcgtttgggagaaaacgggtttttcgt----aatgtcgatgtttaagcgttttcgccaataagtgat 28720471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 53 - 203
Target Start/End: Complemental strand, 16383667 - 16383517
Alignment:
Q  53 ggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaac 152  Q
    ||||||||| |||| ||| | | | |||||||||||||||||||| ||||||| |||||||||||||||||| ||||| |||||||||||||||||||||    
T  16383667 ggttgttgactgaattttcgatgttgttggatgaattgaacctataagaatttatgttttcatgttgtggttgtgttacttgagtcgtttgggagaaaac 16383568  T
Q  153 gggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||| ||||||||||||||||||||||| |||||| |||||||||||    
T  16383567 gggtttttcgtgtgaaatgtcgatgtttaagcattttcgtcaataagtgat 16383517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 2028624 - 2028568
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcg-tttgggagaaaacggg 155  Q
    ||||||||||||| |||||||||||||| |||| |||||| ||||||||||||||||    
T  2028624 gaatttctgtttttatgttgtggttatgatagtcgagtcgttttgggagaaaacggg 2028568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 15525118 - 15525174
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcg-tttgggagaaaacggg 155  Q
    ||||||||||||| |||||||||||||| |||| |||||| ||||||||||||||||    
T  15525118 gaatttctgtttttatgttgtggttatgatagtcgagtcgttttgggagaaaacggg 15525174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 111819 - 111874
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacggg 155  Q
    ||||||||||||| ||||||| ||| || |||| ||||||||||||||||| ||||    
T  111819 gaatttctgtttttatgttgtagttgtgatagtcgagtcgtttgggagaaatcggg 111874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 3894732 - 3894682
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaa 150  Q
    ||||||||||||| ||||||| ||| || |||| |||||||||||||||||    
T  3894732 gaatttctgtttttatgttgtagttgtgatagtcgagtcgtttgggagaaa 3894682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 18364484 - 18364573
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgtttt 189  Q
    ||||||||||||| ||  |  |||||||||||| || |||||||||||||||||||  ||| ||||||    |||| |||||||||||||    
T  18364484 gaatttctgtttttatactaaggttatgttagtcgattcgtttgggagaaaacgggaatttcgtgtgactaatcgacgtttaagcgtttt 18364573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 2190728 - 2190784
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcg-tttgggagaaaacggg 155  Q
    ||||||||||||| ||||| |||||| |||||| |||||| ||||| ||||||||||    
T  2190728 gaatttctgtttttatgttatggttacgttagtcgagtcgttttggaagaaaacggg 2190784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 178; Significance: 3e-96; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 16376680 - 16376873
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  16376680 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 16376779  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16376780 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 16376873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 16384004 - 16384197
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  16384004 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 16384103  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16384104 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 16384197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 22226045 - 22226238
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||    
T  22226045 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgatttgaacctatgagaatttctgt 22226144  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22226145 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 22226238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 10488648 - 10488455
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  10488648 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 10488549  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10488548 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacggatttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 10488455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 16556446 - 16556641
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatat--atatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttct 107  Q
    |||||||||||||||||||||||||||||||| ||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  16556446 gtgttcatgtgaaggaccaaaatgaactttttcatatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttct 16556545  T
Q  108 gttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16556546 gttttcatgttgtggttatgttagttgagtcgtttgagagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 16556641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 16633002 - 16633197
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatat--atatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttct 107  Q
    |||||||||||||||||||||||||||||||| ||||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  16633002 gtgttcatgtgaaggaccaaaatgaactttttcatatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttct 16633101  T
Q  108 gttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16633102 gttttcatgttgtggttatgttagttgagtcgtttgagagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 16633197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 35015465 - 35015655
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  35015465 gtgttcatgtgaaggaccaaaatgaacttttg---atatatatggttgttgactgaaattttgttattgttggatgaattgaacctaggagaatttctgt 35015561  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35015562 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacaggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 35015655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 34 - 203
Target Start/End: Original strand, 16649702 - 16649871
Alignment:
Q  34 aactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttttcatgttgtggttatgttagtt 133  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16649702 aactttttgatatatatatggttgttgactgaaattttgttattgttggatgcattgaacctatgagaatttctgttttcatgttgtggttatgttagtt 16649801  T
Q  134 gagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16649802 gagtcgtttgagagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 16649871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 19983599 - 19983789
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||||| |||||||    ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  19983599 gtgttcatgtgaaggaccaaaataaacttttg---atatatatggttgttgactgaaattttgttattgttggatgaattgaacctaggagcatttctgt 19983695  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19983696 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacggttttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 19983789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 16231841 - 16231652
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||| ||||||||     |||| |||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  16231841 gtgttcatgtgaaggaccaaattgaactttg----atatttatggttgttgactgaaattttgttattgttggatgaattgaacctaggagaatttctgt 16231746  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16231745 tttcatgttgtggttatgttagttgagttgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 16231652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 25905096 - 25904901
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatat--ggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||    
T  25905096 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatatggttgttgactgaaattttattattgttggatgaattgaacctatgagaatttct 25904997  T
Q  108 gttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||||||||||||||||||  |||  ||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||    
T  25904996 gttttcatgttgtggttatgttagttgagtaatttaagagaaaacgggttattcgtgtgaaatgtcgatgtttaaacgttttcgccaataagtgat 25904901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 23977718 - 23977529
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||| ||||||||     |||| |||||||||||| |||||||||||||| |||||||| |||||||||| ||||||||||||    
T  23977718 gtgttcatgtgaaggaccaaattgaactttg----atatttatggttgttgactgaaattttgttattgttggatggattgaacctaggagaatttctgt 23977623  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| ||||||||||||||| |||||||||||||||||||||    
T  23977622 tttcatgttgtggttatgttagttgagttgtttgggagaaagcgggtttttcgtgtaaaatgtcgatgtttatgcgttttcgccaataagtgat 23977529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 18087130 - 18087318
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||| ||||||||     |||| |||||||||||| |||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  18087130 gtgttcatgtgaaggaccaaattgaactttg----atatttatggttgttgactgaaattttgttattgttggatgaattgaatctaggagaatttctgt 18087225  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||    
T  18087226 tttcatgttgtggttatgttagttgagttg-ttgggagaaaacgggtttttcatgtgaaatgtcgatgtttaagcgttctcgccaataagtgat 18087318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 53 - 201
Target Start/End: Original strand, 33314557 - 33314705
Alignment:
Q  53 ggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaac 152  Q
    ||||||||| |||| ||||| | | ||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33314557 ggttgttgactgaatttttgatgttgttggataaattgaacctataagaatttctgttttcatgttgtggttgtgttagttgagtcgtttgggagaaaac 33314656  T
Q  153 gggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtg 201  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  33314657 gggtttttcgtgtgaaatgtcgatgtttaagcattttcgccaataagtg 33314705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 19168755 - 19168630
Alignment:
Q  78 gttggatgaattgaacctatgagaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatg 177  Q
    |||||||||||||||||||  |||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||  | ||||||||||||     
T  19168755 gttggatgaattgaacctagaagaatttctgttttcatgttatggttgtgttagttgagtcgtttgggagaaaacgagtttttcctatgaaatgtcgatc 19168656  T
Q  178 tttaagcgttttcgccaataagtgat 203  Q
    |||||||||||| |||||||||||||    
T  19168655 tttaagcgtttttgccaataagtgat 19168630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 16136254 - 16136069
Alignment:
Q  11 tgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgtt 110  Q
    ||||||||||||||||||||| ||||||||    ||| ||| ||||||| | |||||||||| | |  |||||||| ||  | |||  ||||||| ||||    
T  16136254 tgttcatgtgaaggaccaaaaagaacttttg---atacataaggttgttaactgaaattttgatgttattggatgagttagatctagtagaatttatgtt 16136158  T
Q  111 ttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataag 199  Q
    ||||||| |||||| ||||||| |||||||||||||||||||||| |||| |||||| | |||| ||||||||| |||| || ||||||    
T  16136157 ttcatgtggtggttgtgttagtcgagtcgtttgggagaaaacgggattttcgtgtgagaagtcggtgtttaagcatttttgcaaataag 16136069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 46 - 203
Target Start/End: Original strand, 31467899 - 31468056
Alignment:
Q  46 tatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttttcatgttgtggttatgttagttgagtcgtttggg 145  Q
    |||||| | ||||||| |||||||||| | | ||||| ||| ||  |||||  ||||||||||||||||||||| ||||  |||||| ||||||||||||    
T  31467899 tatataggattgttgactgaaattttgatgttgttgggtgagttagacctagtagaatttctgttttcatgttgaggttgcgttagtggagtcgtttggg 31467998  T
Q  146 agaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||| |||| |  ||||| |||| ||| ||| |||||| || ||||||||||    
T  31467999 agaaaacgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagtgat 31468056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 13621101 - 13621242
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacct-atgagaatttctg 108  Q
    ||||||||||||||||||||| ||||||||     |||| |||||||| ||| |||||||||||||  |||||||||||||||| | ||| |||||||||    
T  13621101 gtgttcatgtgaaggaccaaattgaacttt----gatatttatggttg-tgactgaaattttgttaatgttggatgaattgaacttgatg-gaatttctg 13621194  T
Q  109 ttttcatgttgtggttatgttagttgagtcg-tttgggagaaaacggg 155  Q
    |||| ||||||| |||||| ||||  ||||| ||||||||||||||||    
T  13621195 tttttatgttgtagttatgatagtcaagtcgttttgggagaaaacggg 13621242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 21931179 - 21931026
Alignment:
Q  11 tgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgtt 110  Q
    |||||||||| |||||||||||||||||||    ||||||  ||||||||| |||||||||  | | ||||||||| ||  | ||   ||||||| ||||    
T  21931179 tgttcatgtggaggaccaaaatgaacttttg---atatatgaggttgttgactgaaattttaatgttgttggatgagttagatcttgtagaatttatgtt 21931083  T
Q  111 ttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtga 167  Q
    ||||||| |||||| |||||||  |||||||||||||||||| || |||| ||||||    
T  21931082 ttcatgtggtggttgtgttagtcaagtcgtttgggagaaaacaggattttcgtgtga 21931026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 19175042 - 19174945
Alignment:
Q  102 atttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataag 199  Q
    |||||||||||||||| |||||| ||||||| |||||| ||| || |||||||| |||| || ||| | |||| |||||||||| ||| || ||||||    
T  19175042 atttctgttttcatgtggtggttgtgttagtcgagtcgattgtgacaaaacgggattttcgtttgagaagtcggtgtttaagcgcttttgcaaataag 19174945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 15735305 - 15735361
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcg-tttgggagaaaacggg 155  Q
    ||||||||||||| |||||||||||||| |||| |||||| ||||||||||||||||    
T  15735305 gaatttctgtttttatgttgtggttatgatagtcgagtcgttttgggagaaaacggg 15735361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 25650938 - 25650886
Alignment:
Q  99 agaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaa 151  Q
    |||||||||||||| ||||||||||| || |||| ||||||||||||||||||    
T  25650938 agaatttctgtttttatgttgtggttgtgatagtcgagtcgtttgggagaaaa 25650886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 18776858 - 18776803
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacggg 155  Q
    ||||||||||||| ||||||| ||| || |||| ||||||||||||||||| ||||    
T  18776858 gaatttctgtttttatgttgtagttgtgatagtcgagtcgtttgggagaaatcggg 18776803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 18003046 - 18003116
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcgttt-gggagaaaacgggttttttgtgtgaaa 169  Q
    |||||||| |||| ||||||||| |||| |||| ||||||||| |||||||||||||  |||||| |||||    
T  18003046 gaatttctatttttatgttgtggatatgatagtcgagtcgttttgggagaaaacgggagttttgtttgaaa 18003116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 178; Significance: 3e-96; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 22883391 - 22883584
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  22883391 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 22883490  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22883491 tttcatgttgtggttatgttagttgagtcgtttgggaggaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 22883584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 35581985 - 35581792
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  35581985 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 35581886  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35581885 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 35581792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 36990077 - 36990270
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||    
T  36990077 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttatttttggatgaattgaacctatgagaatttctgt 36990176  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36990177 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 36990270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 21932688 - 21932881
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  21932688 gtgttcatgtgaaggaccaaaatgaacttttcgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 21932787  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21932788 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 21932881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 21938858 - 21939051
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  21938858 gtgttcatgtgaaggaccaaaatgaacttttcgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 21938957  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21938958 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 21939051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 1219827 - 1220018
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||| ||||||||  |||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  1219827 gtgttcatgtgaaggaccaaagtgaacttt--gatatatatatgtttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 1219924  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  1219925 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttctccaataagtgat 1220018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 9730690 - 9730880
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  9730690 gtgttcatgtgaaggaccaaaatgaacttttg---atatatatggttgttgattgaaattttgttattgttggatgaattgaacctaggagaatttctgt 9730786  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  9730787 tttcatgttgtggttatgttagttgagttgtttgggagaaaacgggtttttcgtgtgaaatgttgatgtttaagcattttcgccaataagtgat 9730880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 10778277 - 10778464
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||| ||||||||     |||| |||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||    
T  10778277 gtgttcatgtgaaggaccaaattgaactttg----atatttatggttgttgactgaaattttgttattgttggaggaattgaacctatgagaatttctgt 10778372  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10778373 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtg 10778464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 23514507 - 23514318
Alignment:
Q  13 ttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgtttt 112  Q
    |||||||||||||||||| ||||||||     |||| |||||||||||| |||||||||||||| ||||||||||||||||||| |||||||| | ||||    
T  23514507 ttcatgtgaaggaccaaattgaactttg----atatttatggttgttgactgaaattttgttattgttggatgaattgaacctaggagaatttttttttt 23514412  T
Q  113 ---catgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
       ||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |||||||| ||||||||||    
T  23514411 tttcatgttgtggttatgttagttgagtcgtttgggagaaaatgggtttttcgtatgaaatgtcgatgtttaagtgttttcgctaataagtgat 23514318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 28902163 - 28901972
Alignment:
Q  12 gttcatgtgaaggaccaaaatgaactttttg-atatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgtt 110  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||||| | | |||||||||||||||||||  |||||||  |||    
T  28902163 gttcatgtgaaggaccaaaatgaacttttgatatatatatatggttgttgactgaaattttgatgttgttggatgaattgaacctagaagaatttacgtt 28902064  T
Q  111 ttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||| |||| |||||||||||| |||| |||||||||  |||||| ||||||||||||||| |||||||||||| |||||||||||||    
T  28902063 ttcatgttgcggttgtgttagttgagttgtttaggagaaaacatgtttttcgtgtgaaatgtcgatatttaagcgtttt-gccaataagtgat 28901972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 28938558 - 28938367
Alignment:
Q  12 gttcatgtgaaggaccaaaatgaactttttg-atatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgtt 110  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||||| | | |||||||||||||||||||  |||||||  |||    
T  28938558 gttcatgtgaaggaccaaaatgaacttttgatatatatatatggttgttgactgaaattttgatgttgttggatgaattgaacctagaagaatttacgtt 28938459  T
Q  111 ttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||| |||| |||||||||||| |||| |||||||||  |||||| ||||||||||||||| |||||||||||| |||||||||||||    
T  28938458 ttcatgttgcggttgtgttagttgagttgtttaggagaaaacatgtttttcgtgtgaaatgtcgatatttaagcgtttt-gccaataagtgat 28938367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 203
Target Start/End: Original strand, 21297531 - 21297635
Alignment:
Q  99 agaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataa 198  Q
    ||||||| |||| |||||||| ||||  |||||| |||||||||||||||||||||| |||| |  ||||| |||| ||| ||| |||||| || |||||    
T  21297531 agaatttttgttgtcatgttgaggttgcgttagtcgagtcgtttgggagaaaacgggattttcgcttgaaaagtcgctgtctaaacgtttttgcaaataa 21297630  T
Q  199 gtgat 203  Q
    |||||    
T  21297631 gtgat 21297635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 21109599 - 21109544
Alignment:
Q  99 agaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgg 154  Q
    |||||||||||||| ||||||| ||| || |||| |||||||||||||||||||||    
T  21109599 agaatttctgtttttatgttgtagttgtgatagtcgagtcgtttgggagaaaacgg 21109544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 21399031 - 21399081
Alignment:
Q  153 gggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||| ||||||| |||||||||||||| ||||| |||||||||||||    
T  21399031 gggtttttcgtgtgaagtgtcgatgtttaagtgtttttgccaataagtgat 21399081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 21311074 - 21311128
Alignment:
Q  99 agaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacg 153  Q
    ||||||| |||||||| |||| ||||  |||||| ||||||||||||||||||||    
T  21311074 agaatttatgttttcacgttgaggttgcgttagtcgagtcgtttgggagaaaacg 21311128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 21204630 - 21204574
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcg-tttgggagaaaacggg 155  Q
    |||||||| |||| ||||||||||| || |||| |||||| ||||||||||||||||    
T  21204630 gaatttctttttttatgttgtggttttgatagtcgagtcgttttgggagaaaacggg 21204574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 3e-96; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 1468046 - 1468239
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  1468046 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 1468145  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1468146 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 1468239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 49232385 - 49232193
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||    
T  49232385 gtgttcatgtgaaggaccaaaatgaacttttgg-tatatatatggttgttgactgaaattttgatattgttggatgaattgaacctatgagaatttctgt 49232287  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  49232286 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcaatgtttaagcgttttcgccaataagtgat 49232193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 16821088 - 16820897
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||| ||||||||  |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||||    
T  16821088 gtgttcatgtgaaggaccaaagtgaacttt--gatatatatatggttgttgactgaaattttgttattgttggatgaatcgaacctaggagaatttctgt 16820991  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16820990 tttcatgttgtggttatgttagttgagttgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 16820897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 18910942 - 18910753
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||| ||||||||     |||| |||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  18910942 gtgttcatgtgaaggaccaaattgaactttg----atatttatggttgttgactgaaattttgttattgttggatgaattgaacctaggagaatttctgt 18910847  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18910846 tttcatgttgtggttatgttagttgagttgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 18910753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 28558006 - 28557807
Alignment:
Q  1 tcgagtttggtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgag 100  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||||||||||||||||  ||    
T  28558006 tcgagttaagtgttcatgtgaaggaccaaaatgaactttt-gatatatataaggttgttgactgaaattttgttattgttggatgaattgaacctagaag 28557908  T
Q  101 aatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagt 200  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  28557907 aatttctgttttcatgttgtggttgtgttagttgagtcctttgggagaaaacgggtctttcgtgtgaaatgtcgatgtttaagcattttcgccaataagt 28557808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 54038588 - 54038778
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||| |||||||||||    ||||||| ||||||| | |||||||||||||| | |||||||||||||||||  ||||||| |||    
T  54038588 gtgttcatgtgaaggaccagaatgaacttttg---atatatagggttgttaactgaaattttgttattgctggatgaattgaacctagaagaatttatgt 54038684  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54038685 tttcatgttgtggttgtgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 54038778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 16934282 - 16934481
Alignment:
Q  11 tgttcatgtgaaggaccaaaatgaactttttg-------atatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaat 103  Q
    ||||||||||||||||||||||||||||||         ||||||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||||    
T  16934282 tgttcatgtgaaggaccaaaatgaacttttgatatatatatatatatatggttgttgactaaaattttgttattgttggatgaattgaacctaagagaat 16934381  T
Q  104 ttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||||    
T  16934382 ttttgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacaggttttttgtgtgaaatgtcatagtttaagcgttttcgccaataagtgat 16934481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 17956292 - 17956482
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||| |||||||||||||||||||||    |||||||||||||| || |||||||||||| | ||||||||| |||||||||  | ||||| |||    
T  17956292 gtgttcatgagaaggaccaaaatgaacttttg---atatatatggttgtcgactgaaattttgttgttgttggatgatttgaacctagaaaaatttatgt 17956388  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  17956389 tttcatattgtggttatgctagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcaatgtttaagcgttttcgccaataagtgat 17956482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 30207188 - 30206997
Alignment:
Q  13 ttcatgtgaaggaccaaaatgaactttttg-atatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaa-tttctgtt 110  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||  |||||||||| | | |||||||||||||||| || ||||| ||||||||    
T  30207188 ttcatgtgaaggaccaaaatgaacttttgatatatatatatggttgttggctgaaattttgatgttgttggatgaattgaactta-gagaaatttctgtt 30207090  T
Q  111 ttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||||||||||||||||||||||    
T  30207089 ttcatgttgtggttgtgttagttgagtcgtttgggagaaaacgggtttttcgggtggaatgtcgaagtttaagcgttttcgccaataagtgat 30206997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 40039206 - 40039393
Alignment:
Q  12 gttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttt 111  Q
    |||||||||||||||||||||||| ||| |    || ||  ||||||||| |||| ||||| | | |||||||||||||| ||||   ||||||||||||    
T  40039206 gttcatgtgaaggaccaaaatgaattttgt----tacatgaggttgttgactgaatttttgatgttgttggatgaattgagcctagatgaatttctgttt 40039301  T
Q  112 tcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||| |||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40039302 tcatgttgtggttgtgttagttgaatcgtttgggagaaaatgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 40039393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 19430878 - 19430689
Alignment:
Q  11 tgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgtt 110  Q
    ||||||||||||||||||||||||||||||    ||||||  |||||||||||||  | ||| | |  |||| ||| ||  |||||    ||||||||||    
T  19430878 tgttcatgtgaaggaccaaaatgaacttttg---atatatgaggttgttgattgagttcttgatgttcttgggtgagttatacctagtcaaatttctgtt 19430782  T
Q  111 ttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||| ||||||| |||| |||||||||| | || | |||| |||||||| ||||| ||||||||||||| |  ||||||||||    
T  19430781 ttcatgttgtggttgtgttagtcgagtagtttgggagacagcgagattttcgtgtgaaaagtcgaggtttaagcgtttttgaaaataagtgat 19430689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 8604713 - 8604643
Alignment:
Q  99 agaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaa 169  Q
    |||||||||||||| ||||||||||| || |||| ||||| ||||||||||||||||  ||| ||||||||    
T  8604713 agaatttctgtttttatgttgtggttgtgatagtcgagtcatttgggagaaaacgggagtttcgtgtgaaa 8604643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 15517529 - 15517475
Alignment:
Q  99 agaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacg 153  Q
    ||||||||||||||||||||| ||||  |||||| ||||||||||||||||||||    
T  15517529 agaatttctgttttcatgttgaggttgcgttagtcgagtcgtttgggagaaaacg 15517475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 50351050 - 50351100
Alignment:
Q  153 gggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||| ||||||| |||||||||||||||||||| |||||||||||||    
T  50351050 gggtttttcgtgtgaagtgtcgatgtttaagcgtttttgccaataagtgat 50351100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 13326918 - 13326987
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaa 169  Q
    ||||||||||||| ||||||| |||||| |||| |||||||||||||||||| |||  ||| ||||||||    
T  13326918 gaatttctgtttttatgttgtagttatgatagtcgagtcgtttgggagaaaatgggagtttcgtgtgaaa 13326987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 16261164 - 16261108
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcg-tttgggagaaaacggg 155  Q
    ||||||||||||| |||||||||||  |||||| |||||| ||||||||||||||||    
T  16261164 gaatttctgtttttatgttgtggttgcgttagtggagtcgttttgggagaaaacggg 16261108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 3992255 - 3992204
Alignment:
Q  99 agaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaa 150  Q
    |||||||||||||||||||||| ||| || |||| ||||||| |||||||||    
T  3992255 agaatttctgttttcatgttgtagttgtgatagtcgagtcgtgtgggagaaa 3992204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 11061553 - 11061608
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacggg 155  Q
    ||||||||||||| ||||||| ||| || |||| ||||||||||||||||| ||||    
T  11061553 gaatttctgtttttatgttgtagttgtgatagtcgagtcgtttgggagaaatcggg 11061608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 11882596 - 11882651
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacggg 155  Q
    ||||||||||||| ||||||| ||| || |||| ||||||||||||||||| ||||    
T  11882596 gaatttctgtttttatgttgtagttgtgatagtcgagtcgtttgggagaaatcggg 11882651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 45581422 - 45581384
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatata 49  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  45581422 gtgttcatgtgaaggaccaaaatgaac-ttttgatatata 45581384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 54423716 - 54423666
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaa 150  Q
    ||||||||||||| ||||||| ||| || |||| |||||||||||||||||    
T  54423716 gaatttctgtttttatgttgtagttgtgatagtcgagtcgtttgggagaaa 54423666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 53770743 - 53770687
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcg-tttgggagaaaacggg 155  Q
    ||||||||||||| ||||| |||||| |||||| |||||| ||||| ||||||||||    
T  53770743 gaatttctgtttttatgttatggttacgttagtcgagtcgttttggaagaaaacggg 53770687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 178; Significance: 3e-96; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 11231645 - 11231838
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  11231645 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 11231744  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11231745 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 11231838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 24686088 - 24686281
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  24686088 gtgttcatgtgaaggaccaaaataaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 24686187  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24686188 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 24686281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 28776114 - 28776307
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  28776114 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 28776213  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28776214 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 28776307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 22513492 - 22513685
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  22513492 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 22513591  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22513592 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacggatttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 22513685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 12728341 - 12728146
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaacttt--ttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttct 107  Q
    ||||||| ||||||||||||| ||||||||  |  ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  12728341 gtgttcaggtgaaggaccaaagtgaactttgatatatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttct 12728242  T
Q  108 gttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12728241 gttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 12728146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 43 - 203
Target Start/End: Complemental strand, 34824365 - 34824205
Alignment:
Q  43 atatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttttcatgttgtggttatgttagttgagtcgttt 142  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34824365 atatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgttttcatgttgtggttatgttagttgagtccttt 34824266  T
Q  143 gggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34824265 gggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 34824205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 8943795 - 8943606
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||| ||||||||     |||| |||||||||||| |||||||||| ||| ||||||||||||||||||| ||||||||||||    
T  8943795 gtgttcatgtgaaggaccaaattgaactttg----atatttatggttgttgactgaaattttggtattgttggatgaattgaacctaggagaatttctgt 8943700  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8943699 tttcatgttgtggttatgttagttgagttgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 8943606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 12636175 - 12636364
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||| ||||||||     |||| |||||||||||| |||||||||| ||| ||||||||||||||||||| ||||||||||||    
T  12636175 gtgttcatgtgaaggaccaaattgaactttg----atatttatggttgttgactgaaattttggtattgttggatgaattgaacctaggagaatttctgt 12636270  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12636271 tttcatgttgtggttatgttagttgagttgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 12636364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 12641949 - 12642138
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||| ||||||||     |||| |||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  12641949 gtgttcatgtgaaggaccaaattgaactttg----atatttatggttgttgactgaaattttgttattgttggatgaattgaacctaggagaatttctgt 12642044  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  12642045 tttcatgttgtggttatgttagttgagttgtttgggagaaaacgggtttttcgtgtgaaatgttgatgtttaagcgttttcgccaataagtgat 12642138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 22283903 - 22283713
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||||| || ||||    ||||||||||||||||| |||||||||||||| |||||||||||| |||||| ||||||||||||    
T  22283903 gtgttcatgtgaaggaccaaaataaaattttg---atatatatggttgttgactgaaattttgttattgttggatgaattaaacctaggagaatttctgt 22283807  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||    
T  22283806 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgttgatgtttaaacgttttcgccaataagtgat 22283713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 3798910 - 3799099
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||| ||||||||     |||| |||||||||||| |||||||||||||| |||||||| |||||||||| ||||||||||||    
T  3798910 gtgttcatgtgaaggaccaaattgaactttg----atatttatggttgttgactgaaattttgttattgttggatggattgaacctaggagaatttctgt 3799005  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  3799006 tttcatgttgtggttatgttagttgagttgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttatgcgttttcgccaataagtgat 3799099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 22274670 - 22274480
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||| |||||||||||||| ||| |||||||| |||||| || ||||| |||    
T  22274670 gtgttcatgtgaaggaccaaaatgaactttta---atatatatggttgttgactgaaattttgttattgtttgatgaattaaacctaggacaatttttgt 22274574  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||    
T  22274573 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacggttttttcgtgtgaaatgtcgatgtttaagcgttttcgtcaataagtgat 22274480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 42178276 - 42178457
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||| ||||||||     |||| |||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  42178276 gtgttcatgtgaaggaccaaattgaactttg----atatttatggttgttgactgaaattttgttattgttggatgaattgaacctaggagaatttctgt 42178371  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||| |||        | |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42178372 tttcatgtcgtg--------aattgagttgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 42178457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 22775480 - 22775669
Alignment:
Q  12 gttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttt 111  Q
    |||||||||||||||||||||||| ||||    ||||||||||||||||| | |||||||||| | |||||||||||||||||||  |||||||||||||    
T  22775480 gttcatgtgaaggaccaaaatgaagttttg---atatatatggttgttgacttaaattttgttgttgttggatgaattgaacctagaagaatttctgttt 22775576  T
Q  112 tc-atgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |  ||||||||||| |||||||||||||||||||||||||| ||  |||| |||||||||  |||||||||||||||||||||||||||||||    
T  22775577 ttgatgttgtggttgtgttagttgagtcgtttgggagaaaatggaattttcgtgtgaaatcacgatgtttaagcgttttcgccaataagtgat 22775669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 22780858 - 22781047
Alignment:
Q  12 gttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttt 111  Q
    |||||||||||||||||||||||| ||||    ||||||||||||||||| | |||||||||| | |||||||||||||||||||  |||||||||||||    
T  22780858 gttcatgtgaaggaccaaaatgaagttttg---atatatatggttgttgacttaaattttgttgttgttggatgaattgaacctagaagaatttctgttt 22780954  T
Q  112 tc-atgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |  ||||||||||| |||||||||||||||||||||||||| ||  |||| |||||||||  |||||||||||||||||||||||||||||||    
T  22780955 ttgatgttgtggttgtgttagttgagtcgtttgggagaaaatggaattttcgtgtgaaatcacgatgtttaagcgttttcgccaataagtgat 22781047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 16935383 - 16935197
Alignment:
Q  12 gttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttt 111  Q
    ||||||||||||||||||||||||  ||||| |  | ||  ||||||||| |||| ||||| | | |||||||||||||||||||| |||| ||||||||    
T  16935383 gttcatgtgaaggaccaaaatgaa--ttttgttc-acatgaggttgttgactgaatttttgatgttgttggatgaattgaacctataagaaattctgttt 16935287  T
Q  112 tcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtg 201  Q
    ||||||||||||   |||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  16935286 tcatgttgtggtagagttagttgagtcatttgggagaaaacgggtttttcgtgtaaaatgtcgatgtttaagcgttttcgccaataagtg 16935197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 17006043 - 17005857
Alignment:
Q  12 gttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttt 111  Q
    ||||||||||||||||||||||||  ||||| |  | ||  ||||||||| |||| ||||| | | |||||||||||||||||||| |||| ||||||||    
T  17006043 gttcatgtgaaggaccaaaatgaa--ttttgttc-acatgaggttgttgactgaatttttgatgttgttggatgaattgaacctataagaaattctgttt 17005947  T
Q  112 tcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtg 201  Q
    ||||||||||||   |||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  17005946 tcatgttgtggtagagttagttgagtcatttgggagaaaacgggtttttcgtgtaaaatgtcgatgtttaagcgttttcgccaataagtg 17005857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 20273403 - 20273347
Alignment:
Q  99 agaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacggg 155  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  20273403 agaatttctgttttcatgttgtggttgtgttagtcgagtcgtttgggagaaaacggg 20273347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 24383520 - 24383426
Alignment:
Q  109 ttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||| ||||||| ||||| ||||||||||||  || |||| ||||| || ||||||||||||||| ||| || ||||||||||    
T  24383520 ttttcatgttgtggttgtgttagtcgagtcatttgggagaaaaatggattttcgtgtgcaaagtcgatgtttaagcgcttttgcaaataagtgat 24383426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 24087662 - 24087847
Alignment:
Q  14 tcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttttc 113  Q
    |||||||||| ||||||||||||||||    || |||  ||||||||| |||| ||||| | | ||||| |||  |  |||||  |||||||||||||||    
T  24087662 tcatgtgaagaaccaaaatgaacttttg---atgtatggggttgttgactgaatttttgatgttgttgggtgagctagacctagtagaatttctgttttc 24087758  T
Q  114 atgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||| ||||  |||||| |||||| ||||||||||||||| |||| |  ||||| |||| ||| ||| |||||| || ||||||||||    
T  24087759 atgttgaggttgcgttagtcgagtcgattgggagaaaacgggattttcgcttgaaaagtcggtgtctaaacgtttt-gcaaataagtgat 24087847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 45617782 - 45617882
Alignment:
Q  99 agaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataa 198  Q
    ||||||||| ||||||||||| |||| |||||||  |||| |||||||||||||||| |||| |||||||| |||  ||| ||||| |||| || |||||    
T  45617782 agaatttcttttttcatgttgcggttgtgttagtcaagtcatttgggagaaaacgggattttcgtgtgaaaagtccgtgtataagcatttttgcaaataa 45617881  T
Q  199 g 199  Q
    |    
T  45617882 g 45617882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 21274600 - 21274670
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcg-tttgggagaaaacgggttttttgtgtgaaa 169  Q
    ||||||||||||| |||||||||||||| |||| |||||| ||||||||||||||||  ||| ||||||||    
T  21274600 gaatttctgtttttatgttgtggttatgatagtcgagtcgttttgggagaaaacgggagtttcgtgtgaaa 21274670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 25876463 - 25876519
Alignment:
Q  99 agaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacggg 155  Q
    ||||||| |||||| ||||||||||| || |||| ||||||||||||||||||||||    
T  25876463 agaatttatgtttttatgttgtggttgtggtagtcgagtcgtttgggagaaaacggg 25876519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 19659748 - 19659679
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaa 169  Q
    ||||||||||||| ||||||| ||| || |||| ||||||||||||||||| ||||  ||| ||||||||    
T  19659748 gaatttctgtttttatgttgtagttgtgatagtcgagtcgtttgggagaaatcgggagtttcgtgtgaaa 19659679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 9653438 - 9653493
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacggg 155  Q
    ||||||||||||| ||||||| ||| || |||| |||||||||||| |||||||||    
T  9653438 gaatttctgtttttatgttgtagttgtgatagtcgagtcgtttgggggaaaacggg 9653493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 29111 - 28918
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||    
T  29111 gtgttcatgtgaaggaccataatgaactttttgatatatatatggttgttgactgaaattttgttattgttggttgaattgaacctatgagaatttctgt 29012  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29011 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 28918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 17004587 - 17004394
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  17004587 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 17004488  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17004487 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacggatttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 17004394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 38055398 - 38055590
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  38055398 gtgttcatgtgaaggaccaaaatgaactttt-gatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagaatttctgt 38055496  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38055497 tttcacgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 38055590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 18060065 - 18060258
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| | |||||||||||||    
T  18060065 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacttgtgagaatttctgt 18060164  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18060165 tttcatgttatggttatgttagttgagtcgtttgagagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 18060258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 44035278 - 44035471
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||  ||| |||    
T  44035278 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgactgaaattttgttatttttggatgaattgaacctatgagtttttttgt 44035377  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| |||||||||||    
T  44035378 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgagtttttcgtgtgaaatatcgatgtttaagcgttttcgtcaataagtgat 44035471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 21859239 - 21859049
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||| |||||||||||||| |||||||||||| ||||||  |||||||||||    
T  21859239 gtgttcatgtgaaggaccaaaatgaacttttg---atatatatggttgttgactgaaattttgttattgttggatgaattaaacctagaagaatttctgt 21859143  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  21859142 tttcatgttatggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatggttaagcgttttcgccaataagtgat 21859049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 21650347 - 21650540
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttg-atatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctg 108  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||| | ||||||||||||  |||||||||||||||||| |||||||||||    
T  21650347 gtgttcatgtgaaggaccaaaatgaacttttgatatatatatatggttgttgactaaaattttgttattattggatgaattgaacctaagagaatttctg 21650446  T
Q  109 ttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| ||||||   ||||||||||||||| |||||||||||    
T  21650447 ttttcatgttgtggttatgttagttgagtcgtttgggagaaaatgggtttttcatgtg-aatgtcatagtttaagcgttttcgtcaataagtgat 21650540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 17148516 - 17148328
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||| |||||||| ||||||||     |||| |||||||||||| |||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  17148516 gtgttcatgtgatggaccaaattgaactttg----atatttatggttgttgactgaaattttgttattgttggatgaattgaatctaggagaatttctgt 17148421  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||    
T  17148420 tttcatgttgtggttatgttagttgagttg-ttgggagaaaacgggtttttcatgtgaaatgtcgatgtttaagcgttctcgccaataagtgat 17148328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 16656610 - 16656419
Alignment:
Q  12 gttcatgtgaaggaccaaaatgaactttttg-atatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgtt 110  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||||| | | |||||||||||||||||||  |||||||  |||    
T  16656610 gttcatgtgaaggaccaaaatgaacttttgatatatatatatggttgttgactgaaattttgatgttgttggatgaattgaacctagaagaatttacgtt 16656511  T
Q  111 ttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||| |||| |||||||||||| |||| |||||||||  |||||| ||||||||||||||| |||||||||||| |||||||||||||    
T  16656510 ttcatgttgcggttgtgttagttgagttgtttaggagaaaacatgtttttcgtgtgaaatgtcgatatttaagcgtttt-gccaataagtgat 16656419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 35054483 - 35054433
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaa 150  Q
    ||||||||||||| ||||||| ||| || |||| |||||||||||||||||    
T  35054483 gaatttctgtttttatgttgtagttgtgatagtcgagtcgtttgggagaaa 35054433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 154314 - 154506
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||    
T  154314 gtgttcatgtgaaggaccaaaatgaactttt-gatatatatatggttgttgactgaaatttttttattgttggatgaattgaacctatgagaatttctgt 154412  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  154413 tttcatgttgtggttgtgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 154506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 162487 - 162680
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  162487 gtgttcatgtgaaggaccaaaatgaacttttcgatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctaggagaatttctgt 162586  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  162587 tttcatgttgtgcttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagtgttttcgccaataagtgat 162680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 166565 - 166755
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  166565 gtgttcatgtgaaggaccaaaatgaacttttg---atatatatggttgttgactgaaattttgttattgttggatgaattgaacctaggagaatttctgt 166661  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  166662 tttcatgttgtgcttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagtgttttcgccaataagtgat 166755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 18168919 - 18168728
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||| ||||||||  |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||    
T  18168919 gtgttcatgtgaaggaccaaagtgaacttt--gatatatatatggttgttgactgaaattttgttattgttggatgaattgaacctatgagattttctgt 18168822  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  18168821 tttcatgttgtggttatgttagttgagtcgtttggaagaaaacgggtttttcgagtgaaatgtcgatgtttaagcgttttcgccaataagtgat 18168728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 7132372 - 7132561
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||| ||||||||     |||| |||||||||||| |||||| ||||||| ||| ||||||||||||||| ||||||||||||    
T  7132372 gtgttcatgtgaaggaccaaattgaactttg----atatttatggttgttgactgaaatgttgttattgttcgatgaattgaacctaggagaatttctgt 7132467  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  7132468 tttcatgttgtggttatgttagttgagttgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcaccaataagtgat 7132561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 20000672 - 20000483
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||| ||||||||     |||| |||||||||||| |||||||||||||| |||||||| |||||||||| |||||||| |||    
T  20000672 gtgttcatgtgaaggaccaaattgaactttg----atatttatggttgttgactgaaattttgttattgttggatggattgaacctaggagaatttttgt 20000577  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  20000576 tttcatgttgtggttatgttagttgagttgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttatgcgttttcgccaataagtgat 20000483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 25119516 - 25119704
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||| |||||| ||||||| |||| ||||||||||| || ||||||||||||    
T  25119516 gtgttcatgtgaaggaccaaaatgaacttttg---atatatatggttgttgactgaaatgttgttattgttgtatgaattgaacataagagaatttctgt 25119612  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtg 201  Q
    |||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  25119613 tttcatattgtggttgtgttagttgagtcgtttgggagaaaatgggtttttcgtgtgaaatgtcgaggtttaagcgttttcggcaataagtg 25119704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 5682835 - 5683025
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaa-tttctg 108  Q
    |||||||||||||||||||||||||||||||    || |||||||||||||| |||||||||| | | |||||||||||||||| || ||||| ||||||    
T  5682835 gtgttcatgtgaaggaccaaaatgaacttttg---atgtatatggttgttgactgaaattttgatgttgttggatgaattgaactta-gagaaatttctg 5682930  T
Q  109 ttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||| |||||||    
T  5682931 ttttcatgttgtggttgtgttagtcgagtcgtttgggagaaaacgggattttcgtgtgaaatgtcgaggtttaagcgttttcgccaacaagtgat 5683025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 53 - 203
Target Start/End: Original strand, 15213937 - 15214087
Alignment:
Q  53 ggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaac 152  Q
    ||||||||| |||| ||||  | | |||||||||||||||||||  ||||||| |||||| ||||||||||| |||||||||||| ||||||||||||||    
T  15213937 ggttgttgactgaattttttatgttgttggatgaattgaacctagaagaatttatgttttaatgttgtggttgtgttagttgagtagtttgggagaaaac 15214036  T
Q  153 gggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    || ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15214037 ggatttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 15214087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 54363570 - 54363759
Alignment:
Q  11 tgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgtt 110  Q
    ||||||||||||||||||||||||| |||||| || ||    ||||||||| |||| ||||| | |  ||||||||||||||||||  ||||||| ||||    
T  54363570 tgttcatgtgaaggaccaaaatgaa-tttttgttacatga--ggttgttgactgaatttttgatgttcttggatgaattgaacctagaagaatttttgtt 54363666  T
Q  111 ttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    || ||||||||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| |||| |||||||||||||    
T  54363667 ttgatgttgtggttgtgttagttgagtcgtttgggagaaaacggatttttcgtgcgaaatgtcgatgtttaagcatttttgccaataagtgat 54363759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 203
Target Start/End: Original strand, 17375607 - 17375757
Alignment:
Q  53 ggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaac 152  Q
    ||||||||| |||  |||||  || |||| ||||||||||||||  ||||||  |||||||||||| ||||| |||||||||||||||||||||||||||    
T  17375607 ggttgttgactgagtttttgacatggttgaatgaattgaacctagaagaattgatgttttcatgttctggttgtgttagttgagtcgtttgggagaaaac 17375706  T
Q  153 gggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||| || || |||||||| | ||||||||||| |||||||||||||    
T  17375707 gggtttttcgtatgtaatgtcgacgattaagcgtttttgccaataagtgat 17375757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 13043062 - 13043231
Alignment:
Q  17 tgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttttcatg 116  Q
    |||||||||||||||||||||||| |||||||  |  || ||||| ||| |||||| | | ||||||||| || |||||    ||||||||||||| |||    
T  13043062 tgtgaaggaccaaaatgaactttt-gatatatgaa--gtcgttgactgagattttgatgttgttggatgagttaaaccttgtggaatttctgtttttatg 13043158  T
Q  117 ttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgtttt 189  Q
    ||  |||||||||||| |||| ||||||||||||||||| ||||||||||||   ||||||||||||||||||    
T  13043159 ttaaggttatgttagtcgagttgtttgggagaaaacgggatttttgtgtgaacaatcgatgtttaagcgtttt 13043231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 30233061 - 30233116
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacggg 155  Q
    ||||||||||||| ||||||| ||| || |||| ||||||||||||||||| ||||    
T  30233061 gaatttctgtttttatgttgtagttgtgatagtcgagtcgtttgggagaaatcggg 30233116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 52266073 - 52266128
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacggg 155  Q
    ||||||||||||| ||||||| ||| || |||| ||||||||||||||||| ||||    
T  52266073 gaatttctgtttttatgttgtagttgtgatagtcgagtcgtttgggagaaatcggg 52266128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 12837742 - 12837796
Alignment:
Q  101 aatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacggg 155  Q
    |||||||||||| ||||||| ||| || |||| ||||||||||||||||| ||||    
T  12837742 aatttctgtttttatgttgtagttgtgatagtcgagtcgtttgggagaaatcggg 12837796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 15851909 - 15851963
Alignment:
Q  101 aatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacggg 155  Q
    ||||||| |||| ||||||||||| || |||| ||||||||||| ||||||||||    
T  15851909 aatttctttttttatgttgtggttgtgatagtcgagtcgtttggaagaaaacggg 15851963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 31588 - 31775
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||| |||||||||||||| |||||||||||||||| || ||||||||||||    
T  31588 gtgttcatgtgaaggaccaaaatgaacttttg---atatatatggttgttgactgaaattttgttattgttggatgaattgaacataggagaatttctgt 31684  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  31685 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatatcgatgtttaagcgttttcgccaataagt 31775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 41256 - 41069
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||| |||||||||||||| |||||||||||||||| || ||||||||||||    
T  41256 gtgttcatgtgaaggaccaaaatgaacttttg---atatatatggttgttgactgaaattttgttattgttggatgaattgaacataggagaatttctgt 41160  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  41159 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatatcgatgtttaagcgttttcgccaataagt 41069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 79652 - 79462
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||| |||||| ||||||| |||||||||| ||||||||| |||||||||||||| |||||||||||||||||||  |||||||||||    
T  79652 gtgttcatgtgaaggatcaaaattaactttt-gatatatatagggttgttgactgaaattttgttattgttggatgaattgaacctagaagaatttctgt 79554  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtg 201  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  79553 tttcatgttgtggttgtgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtg 79462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 40471 - 40290
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||| |||||||||||||| |||||||||||||||||||  | ||||| |||    
T  40471 gtgttcatgtgaaggaccaaaatgaacttttg---atatatatggttgttgactgaaattttgttattgttggatgaattgaacctagaataatttttgt 40375  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgcca 194  Q
    ||| || |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40374 tttgattttgtggttgtgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgcca 40290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 45954 - 45773
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||| ||||||||||||   |||||||||||||||||||  | |||||||||    
T  45954 gtgttcatgtgaaggaccaaaatgaacttttg---atatatatggttgttgactgaaattttgttgctgttggatgaattgaacctagaaaaatttctgt 45858  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgcca 194  Q
    ||| || |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45857 tttgatattgtggttgtgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgcca 45773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 6391 - 6581
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||| |||||||||||||||||||||    ||||||||||||||||  ||||||||||||||  ||||||||| |||||||| ||||||||||||    
T  6391 gtgttcatgagaaggaccaaaatgaacttttg---atatatatggttgttgtatgaaattttgttatttttggatgaactgaacctaggagaatttctgt 6487  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  6488 tttcatgttgtggttatgttagttgagtcgtttgggagaaaaagggtttttcgtgtgaaatctcgatgtttaagcgttttcgccaataagtgat 6581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 19365 - 19555
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||||||||||||||||  | ||||| |||    
T  19365 gtgttcatgtgaaggaccaaaatgaactttt-gatatatatagggttgttgactgaaattttgttattgttggatgaattgaacctagaaaaatttatgt 19463  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtg 201  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||| ||||||||||||||||    
T  19464 tttcatgttgtggttgtgttagttgagtcgtttgggagaaaaccggtttttcatgtgaaatgtcgatgtttaagcattttcgccaataagtg 19555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 15930 - 16118
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||| |||||||||||||| |||||||||||||||||||  |||| || |||    
T  15930 gtgttcatgtgaaggaccaaaatgaacttttg---atatatatggttgttgactgaaattttgttattgttggatgaattgaacctaaaagaaattttgt 16026  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtg 201  Q
     |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  16027 cttcatgttgtggttgtgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcaccaataagtg 16118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0342 (Bit Score: 130; Significance: 1e-67; HSPs: 2)
Name: scaffold0342
Description:

Target: scaffold0342; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 758 - 946
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||    |||| |||||||||||| |||||||||||||  |||||||||||||||||||  |||| || |||    
T  758 gtgttcatgtgaaggaccaaaatgaacttttg---atatgtatggttgttgactgaaattttgttactgttggatgaattgaacctagaagaaattatgt 854  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtg 201  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  855 tttcatgttgtggttgtgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagcattttcgccaataagtg 946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0342; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 5644 - 5594
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaa 150  Q
    ||||||||||||| ||||||| ||| || |||| |||||||||||||||||    
T  5644 gaatttctgtttttatgttgtagttgtgatagtcgagtcgtttgggagaaa 5594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 1839 - 2028
Alignment:
Q  11 tgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgtt 110  Q
    |||||||||| |||||||||||||||||||    ||||||||||||||||| |||||||||| | | |||||||||||||||| |||   ||||||||||    
T  1839 tgttcatgtggaggaccaaaatgaacttttg---atatatatggttgttgactgaaattttgatgttgttggatgaattgaacttatagaaatttctgtt 1935  T
Q  111 ttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1936 ttcatgttgtggttgtgttagttgagtcgtttgggagaaaatgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 2028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 8984 - 9173
Alignment:
Q  11 tgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgtt 110  Q
    |||||||||| |||||||||||||||||||    ||||||||||||||||| |||||||||| | | |||||||||||||||| |||   ||||||||||    
T  8984 tgttcatgtggaggaccaaaatgaacttttg---atatatatggttgttgactgaaattttgatgttgttggatgaattgaacttatagaaatttctgtt 9080  T
Q  111 ttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9081 ttcatgttgtggttgtgttagttgagtcgtttgggagaaaatgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 9173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 33454 - 33264
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||| ||||||||   | |  ||||||||||||||||||  |||||||||||    
T  33454 gtgttcatgtgaaggaccaaaatgaacttttg---atatatatggttgttgactgaaatttcaatgtttttggatgaattgaacctagaagaatttctgt 33358  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
    ||||||||||||||| |||||||||||||||||||   ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33357 tttcatgttgtggttgtgttagttgagtcgtttggtcaaaaacgggtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 33264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0452 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0452
Description:

Target: scaffold0452; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 3065 - 3251
Alignment:
Q  12 gttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttt 111  Q
    |||||| || |||||||||||||||||||    ||||||| ||||||||| |||||||||| | | |||||||||| |||||||   |||||||||||||    
T  3065 gttcatttggaggaccaaaatgaacttttg---atatataaggttgttgactgaaattttgatgttgttggatgaactgaacctggaagaatttctgttt 3161  T
Q  112 tcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtg 201  Q
    ||||||||||||| | |||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||| ||||||    
T  3162 tcatgttgtggttgttttagttgagtcgtttgggagaaaacgtgtttttcgtgtgaaatgtcaatgtttaagcgttttcgccactaagtg 3251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1204 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold1204
Description:

Target: scaffold1204; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 367 - 553
Alignment:
Q  12 gttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttt 111  Q
    |||||||||||||||||||||||| ||| |    || ||  ||||||||| |||| ||||  | | |||||||||||||||||||  |||||||||||||    
T  367 gttcatgtgaaggaccaaaatgaattttgt----tacatgaggttgttgactgaattttttatgttgttggatgaattgaacctagaagaatttctgttt 462  T
Q  112 tcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 203  Q
     |||||||||||| |||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  463 ccatgttgtggttgtgttagttgagtcgtttgggagaaaac-agtttttcgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgat 553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0409 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: scaffold0409
Description:

Target: scaffold0409; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 1622 - 1809
Alignment:
Q  12 gttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttt 111  Q
    ||||||||||| |||||||||||||||||    ||||||||||||||||  | |||||||  ||| ||||||||||||||||| |  ||||||| |||||    
T  1622 gttcatgtgaaagaccaaaatgaacttttg---atatatatggttgttggcttaaatttt--tat-gttggatgaattgaaccaagaagaatttatgttt 1715  T
Q  112 tcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgatga 205  Q
    ||||||||||||| ||||||  ||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||| |||||||||||||||    
T  1716 tcatgttgtggttgtgttagcagagtcgtttgggagaaaacaggtttttcgtgtgaaatgccgatgtttaagcgtttttgccaataagtgatga 1809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0409; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 9877 - 10064
Alignment:
Q  12 gttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgttt 111  Q
    ||||||||||| |||||||||||||||||    ||||||||||||||||  | |||||||  ||| ||||||||||||||||| |  ||||||| |||||    
T  9877 gttcatgtgaaagaccaaaatgaacttttg---atatatatggttgttggcttaaatttt--tat-gttggatgaattgaaccaagaagaatttatgttt 9970  T
Q  112 tcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtgatga 205  Q
    ||||||||||||| ||||||  ||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||| |||||||||||||||    
T  9971 tcatgttgtggttgtgttagcagagtcgtttgggagaaaacaggtttttcgtgtgaaatgccgatgtttaagcgtttttgccaataagtgatga 10064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 16332 - 16218
Alignment:
Q  87 attgaacctatgagaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgt 186  Q
    ||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  16332 attgaacctagaagaatttctgttttcatgttgtggttgtgttagttgagtcgtttgggagaaaacgggtttttcgtgtgaaatgtcgatgtttaagtgt 16233  T
Q  187 tttcgccaataagtg 201  Q
    |||||||||||||||    
T  16232 tttcgccaataagtg 16218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0521 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0521
Description:

Target: scaffold0521; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 10902 - 10726
Alignment:
Q  10 gtgttcatgtgaaggaccaaaatgaactttttgatatatatatggttgttgattgaaattttgttatcgttggatgaattgaacctatgagaatttctgt 109  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||| |||||||||| | | ||||||||||||  | |||  |||||||||||    
T  10902 gtgttcatgtgaaggaccaaaatgaacttttg---atatatatggttgttgactgaaattttgatgttgttggatgaattagatctagtagaatttctgt 10806  T
Q  110 tttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaatgtcgatgtttaagcgtttt 189  Q
    ||||| || |||||| ||||||| |||||||||||||||||||||| |||| |||||| | |||  ||||||||||||||    
T  10805 tttcacgtggtggttgtgttagtcgagtcgtttgggagaaaacgggattttcgtgtgagaagtccgtgtttaagcgtttt 10726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 13939 - 13995
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcg-tttgggagaaaacggg 155  Q
    ||||||||||||| |||||||||||||| |||| |||||| ||||||||||||||||    
T  13939 gaatttctgtttttatgttgtggttatgatagtcgagtcgttttgggagaaaacggg 13995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0447
Description:

Target: scaffold0447; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 4270 - 4202
Alignment:
Q  101 aatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaa 169  Q
    |||||||||||| ||||||| ||| || |||| ||||||||||||||||| ||||  ||||| ||||||    
T  4270 aatttctgtttttatgttgtagttgtgatagtcgagtcgtttgggagaaatcgggagttttgggtgaaa 4202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 8884 - 8816
Alignment:
Q  101 aatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaa 169  Q
    |||||||||||| ||||||| ||| || |||| ||||||||||||||||| ||||  ||||| ||||||    
T  8884 aatttctgtttttatgttgtagttgtgatagtcgagtcgtttgggagaaatcgggagttttgggtgaaa 8816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0383 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 6878 - 6810
Alignment:
Q  101 aatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaaacgggttttttgtgtgaaa 169  Q
    |||||||||||| ||||||| ||| || |||| ||||||||||||||||| ||||  ||||| ||||||    
T  6878 aatttctgtttttatgttgtagttgtgatagtcgagtcgtttgggagaaatcgggagttttgggtgaaa 6810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 14651 - 14595
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtc-gtttgggagaaaacggg 155  Q
    ||||||||||||| |||||||||||||| |||| |||||  ||||||||||||||||    
T  14651 gaatttctgtttttatgttgtggttatgatagtcgagtcattttgggagaaaacggg 14595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 88021 - 87949
Alignment:
Q  78 gttggatgaattgaacctatgagaatttctgttttcatgttgtggttatgttagttgagtcgtttgggagaaa 150  Q
    |||||||||||| ||| | |  ||||||||||||| ||||||| ||| || |||| |||||||||||||||||    
T  88021 gttggatgaattaaacatgttggaatttctgtttttatgttgtagttgtgatagtcgagtcgtttgggagaaa 87949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 77111 - 77074
Alignment:
Q  11 tgttcatgtgaaggaccaaaatgaactttttgatatata 49  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  77111 tgttcatgtgaaggaccaaaatgaac-ttttgatatata 77074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 28371 - 28322
Alignment:
Q  153 gggttttttgtgtgaaatgtcgatgtttaagcgttttcgccaataagtga 202  Q
    |||||||| ||||||| | |||||||||||| ||||| ||||||||||||    
T  28371 gggtttttcgtgtgaagtatcgatgtttaagtgtttttgccaataagtga 28322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0574 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0574
Description:

Target: scaffold0574; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 10059 - 10115
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcg-tttgggagaaaacggg 155  Q
    |||||||| |||| |||||||||||||| |||| |||||| ||||||| ||||||||    
T  10059 gaatttctatttttatgttgtggttatgatagtcgagtcgttttgggataaaacggg 10115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 551 - 607
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcg-tttgggagaaaacggg 155  Q
    ||||||||||||| ||||||| ||| || |||| |||||| ||||||||||||||||    
T  551 gaatttctgtttttatgttgtagttttgatagtcgagtcgttttgggagaaaacggg 607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 187081 - 187137
Alignment:
Q  100 gaatttctgttttcatgttgtggttatgttagttgagtcg-tttgggagaaaacggg 155  Q
    ||||||||||||| ||||||||||||||  |||  ||||| ||||||||||||||||    
T  187081 gaatttctgtttttatgttgtggttatgaaagtcaagtcgttttgggagaaaacggg 187137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University