View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2085_1D_low_7 (Length: 473)

Name: NF2085_1D_low_7
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2085_1D_low_7
NF2085_1D_low_7
[»] chr2 (24 HSPs)
chr2 (1-102)||(24361314-24361415)
chr2 (124-214)||(24361652-24361742)
chr2 (224-356)||(16514427-16514559)
chr2 (224-340)||(6721970-6722086)
chr2 (253-342)||(15011297-15011386)
chr2 (224-327)||(38933619-38933722)
chr2 (224-320)||(6217227-6217323)
chr2 (221-320)||(14470592-14470691)
chr2 (224-319)||(37961746-37961841)
chr2 (224-320)||(14229356-14229452)
chr2 (246-341)||(8534164-8534259)
chr2 (271-356)||(29508741-29508826)
chr2 (253-320)||(2828623-2828690)
chr2 (231-320)||(29925580-29925669)
chr2 (284-356)||(9173044-9173116)
chr2 (313-358)||(45213892-45213937)
chr2 (310-358)||(14470593-14470641)
chr2 (297-356)||(6722027-6722086)
chr2 (297-356)||(16514500-16514559)
chr2 (270-320)||(2894002-2894052)
chr2 (297-355)||(33018621-33018679)
chr2 (221-358)||(24115921-24116058)
chr2 (224-356)||(32545789-32545923)
chr2 (224-320)||(14892300-14892395)
[»] scaffold0586 (2 HSPs)
scaffold0586 (222-358)||(7048-7183)
scaffold0586 (297-358)||(7048-7109)
[»] chr3 (22 HSPs)
chr3 (225-356)||(51046077-51046208)
chr3 (253-358)||(33689177-33689282)
chr3 (221-356)||(30734402-30734537)
chr3 (224-356)||(41752967-41753099)
chr3 (244-356)||(47492070-47492182)
chr3 (249-358)||(55223233-55223342)
chr3 (224-355)||(50524706-50524837)
chr3 (224-320)||(1801449-1801545)
chr3 (249-316)||(29031742-29031809)
chr3 (253-320)||(30476506-30476573)
chr3 (224-355)||(30580759-30580890)
chr3 (274-356)||(43139762-43139844)
chr3 (270-320)||(47677304-47677354)
chr3 (297-358)||(30734403-30734464)
chr3 (297-356)||(45103112-45103171)
chr3 (259-342)||(50549992-50550075)
chr3 (247-353)||(18321657-18321763)
chr3 (247-310)||(34060234-34060297)
chr3 (221-283)||(33689176-33689238)
chr3 (288-353)||(39057024-39057089)
chr3 (249-310)||(49418719-49418780)
chr3 (224-292)||(45103112-45103180)
[»] chr8 (21 HSPs)
chr8 (224-356)||(5033164-5033296)
chr8 (225-356)||(10086760-10086891)
chr8 (224-356)||(5667100-5667232)
chr8 (224-356)||(33841594-33841726)
chr8 (224-356)||(35440972-35441104)
chr8 (225-356)||(43844475-43844604)
chr8 (221-356)||(8796425-8796560)
chr8 (224-327)||(6296637-6296740)
chr8 (224-358)||(4958601-4958733)
chr8 (224-356)||(45191130-45191262)
chr8 (253-358)||(34229642-34229747)
chr8 (271-356)||(8243438-8243523)
chr8 (253-306)||(34541835-34541888)
chr8 (225-320)||(39850994-39851089)
chr8 (297-355)||(10086833-10086891)
chr8 (297-356)||(5033237-5033296)
chr8 (240-298)||(31159912-31159970)
chr8 (289-356)||(2581828-2581895)
chr8 (297-356)||(33841594-33841653)
chr8 (297-356)||(35440972-35441031)
chr8 (297-358)||(8796498-8796559)
[»] chr5 (29 HSPs)
chr5 (224-356)||(19655161-19655293)
chr5 (224-342)||(29699384-29699502)
chr5 (221-358)||(12913804-12913941)
chr5 (224-320)||(28818956-28819052)
chr5 (224-331)||(2093940-2094047)
chr5 (224-356)||(291100-291232)
chr5 (224-320)||(16971183-16971279)
chr5 (224-355)||(30117831-30117962)
chr5 (224-306)||(2953243-2953325)
chr5 (252-333)||(38134404-38134485)
chr5 (224-320)||(3899878-3899974)
chr5 (259-358)||(3180098-3180196)
chr5 (270-320)||(16439177-16439227)
chr5 (269-355)||(39031199-39031285)
chr5 (297-358)||(12913879-12913940)
chr5 (303-356)||(13312267-13312320)
chr5 (300-356)||(30117831-30117887)
chr5 (274-353)||(2935883-2935961)
chr5 (297-356)||(16971220-16971279)
chr5 (274-356)||(19598335-19598417)
chr5 (221-316)||(2356317-2356409)
chr5 (297-356)||(291173-291232)
chr5 (297-356)||(2093940-2093999)
chr5 (297-356)||(2953266-2953325)
chr5 (297-356)||(3899915-3899974)
chr5 (253-320)||(16802483-16802550)
chr5 (221-327)||(26662431-26662538)
chr5 (221-327)||(26934026-26934133)
chr5 (295-356)||(1638460-1638521)
[»] chr4 (31 HSPs)
chr4 (224-356)||(6271705-6271837)
chr4 (224-356)||(51265448-51265580)
chr4 (227-356)||(23444275-23444404)
chr4 (223-356)||(35682169-35682302)
chr4 (249-320)||(40789218-40789289)
chr4 (224-342)||(47661859-47661977)
chr4 (233-356)||(47762611-47762734)
chr4 (253-331)||(52028577-52028655)
chr4 (223-320)||(53954649-53954746)
chr4 (247-310)||(28693949-28694012)
chr4 (269-356)||(30861822-30861909)
chr4 (253-356)||(26186048-26186149)
chr4 (224-320)||(42375049-42375145)
chr4 (310-356)||(2325069-2325115)
chr4 (244-306)||(25818396-25818458)
chr4 (297-357)||(35682242-35682302)
chr4 (259-306)||(45591448-45591495)
chr4 (297-356)||(47661918-47661977)
chr4 (253-320)||(55090028-55090095)
chr4 (270-331)||(38714851-38714912)
chr4 (253-306)||(50384137-50384190)
chr4 (297-353)||(23444275-23444331)
chr4 (308-356)||(30709987-30710035)
chr4 (297-356)||(42375086-42375145)
chr4 (253-320)||(47404617-47404684)
chr4 (294-356)||(3862619-3862681)
chr4 (294-356)||(3871376-3871438)
chr4 (310-356)||(44380019-44380065)
chr4 (253-306)||(24006102-24006155)
chr4 (284-341)||(31532752-31532809)
chr4 (297-357)||(53954686-53954746)
[»] chr1 (33 HSPs)
chr1 (224-356)||(48993920-48994052)
chr1 (266-358)||(9157311-9157403)
chr1 (225-356)||(29179601-29179732)
chr1 (269-356)||(36290455-36290542)
chr1 (253-356)||(37155049-37155152)
chr1 (270-356)||(1091593-1091679)
chr1 (253-331)||(47303423-47303501)
chr1 (224-356)||(5995372-5995504)
chr1 (228-356)||(32540755-32540883)
chr1 (253-356)||(17127596-17127699)
chr1 (221-320)||(29371407-29371506)
chr1 (253-358)||(4608997-4609102)
chr1 (224-320)||(15220850-15220946)
chr1 (253-352)||(45728294-45728393)
chr1 (247-333)||(46333972-46334058)
chr1 (283-356)||(21630045-21630118)
chr1 (271-356)||(44706834-44706919)
chr1 (253-327)||(8337883-8337957)
chr1 (297-358)||(29371444-29371505)
chr1 (253-319)||(741534-741600)
chr1 (288-353)||(28395643-28395708)
chr1 (249-331)||(38674533-38674613)
chr1 (297-356)||(48993920-48993979)
chr1 (227-333)||(33219599-33219705)
chr1 (297-358)||(17127565-17127626)
chr1 (295-356)||(46932000-46932061)
chr1 (279-356)||(48498418-48498495)
chr1 (297-356)||(15220887-15220946)
chr1 (253-304)||(28928811-28928862)
chr1 (253-320)||(34062248-34062315)
chr1 (274-316)||(5694942-5694984)
chr1 (297-355)||(29179601-29179659)
chr1 (297-353)||(33219649-33219705)
[»] chr6 (11 HSPs)
chr6 (221-358)||(17750904-17751040)
chr6 (224-314)||(13043502-13043592)
chr6 (227-320)||(12343139-12343232)
chr6 (253-320)||(10521881-10521948)
chr6 (270-356)||(24587464-24587550)
chr6 (224-326)||(24618604-24618706)
chr6 (271-356)||(551215-551300)
chr6 (303-356)||(24618604-24618657)
chr6 (279-320)||(31654344-31654385)
chr6 (297-356)||(7384491-7384550)
chr6 (297-358)||(17750978-17751039)
[»] chr7 (17 HSPs)
chr7 (224-356)||(11016872-11017004)
chr7 (253-356)||(41018260-41018363)
chr7 (224-356)||(4290548-4290680)
chr7 (224-356)||(38975808-38975940)
chr7 (274-341)||(22764753-22764820)
chr7 (253-356)||(34854727-34854830)
chr7 (224-327)||(42628327-42628430)
chr7 (244-353)||(15027548-15027657)
chr7 (271-358)||(30217504-30217590)
chr7 (279-356)||(45231908-45231985)
chr7 (297-356)||(11016945-11017004)
chr7 (253-320)||(27028825-27028892)
chr7 (271-320)||(7671961-7672010)
chr7 (227-320)||(48000776-48000869)
chr7 (273-320)||(29053366-29053413)
chr7 (224-355)||(41945859-41945990)
chr7 (309-356)||(42628383-42628430)
[»] scaffold0161 (2 HSPs)
scaffold0161 (224-356)||(27223-27355)
scaffold0161 (304-356)||(27223-27275)
[»] scaffold0180 (2 HSPs)
scaffold0180 (221-310)||(19122-19211)
scaffold0180 (297-358)||(19123-19184)
[»] scaffold0016 (2 HSPs)
scaffold0016 (224-320)||(49706-49802)
scaffold0016 (297-356)||(49706-49765)
[»] scaffold0047 (1 HSPs)
scaffold0047 (253-320)||(63796-63863)
[»] scaffold0481 (1 HSPs)
scaffold0481 (249-306)||(2915-2972)
[»] scaffold1033 (1 HSPs)
scaffold1033 (270-306)||(2266-2302)
[»] scaffold1029 (1 HSPs)
scaffold1029 (270-306)||(2266-2302)


Alignment Details
Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 24361314 - 24361415
Alignment:
Q  1 tcagaattaatttatctcatttcgatttcttttcaaaattagataaagataggatataatacaatataaatgttaaagatagtctatttttaacactttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24361314 tcagaattaatttatctcatttcgatttcttttcaaaattaaataaagatatgatataatacaatataaatgttaaagatactctatttttaacactttc 24361413  T
Q  101 gt 102  Q
    ||    
T  24361414 gt 24361415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 24361652 - 24361742
Alignment:
Q  124 gtgagtgtattgttgaaaagaaaatgtcgatagtacactaatacaattatcttacaagacttttgttatcttggctttaacaatgacacag 214  Q
    ||||||||| ||||||||||||||||||  ||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||    
T  24361652 gtgagtgtactgttgaaaagaaaatgtctttagtacactaatacaattatcttaccagacgtttgttatcttggcttcaacaatgacacag 24361742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 224 - 356
Target Start/End: Complemental strand, 16514559 - 16514427
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    ||||||||||||||  ||| |||| ||| |||| ||||| | ||| |||||||| ||||||||||||||||||||||| ||||||| ||| |||||| |     
T  16514559 gtgacatagagttgggtgagattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattatggcatagtgattggc 16514460  T
Q  324 caatatcatcaatgtcacctaactctatgtcac 356  Q
    |||| ||| |||||||||| |||||||||||||    
T  16514459 caatgtcaccaatgtcacccaactctatgtcac 16514427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 224 - 340
Target Start/End: Complemental strand, 6722086 - 6721970
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    ||||||||||||||  ||| |||  |||||||||||||| | ||| |||||||| ||||||||||||||||||||||| |||| ||| ||||||||| ||    
T  6722086 gtgacatagagttggttgacattagtgatattggccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtgatattgtgattggt 6721987  T
Q  324 caatatcatcaatgtca 340  Q
    |||| ||| ||||||||    
T  6721986 caatgtcaccaatgtca 6721970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 253 - 342
Target Start/End: Complemental strand, 15011386 - 15011297
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacc 342  Q
    |||||||||| | ||| |||||||| |||||||||||||||||||||||||||| || |||||||||| | |||||||| ||||||||||    
T  15011386 attggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatatcaccaatgtcacc 15011297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 224 - 327
Target Start/End: Complemental strand, 38933722 - 38933619
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    ||||||||||||||  ||| |||| |||  ||||||||| ||||| |||||||| ||||||||||||||||||||||| |||| || |||||||||| ||    
T  38933722 gtgacatagagttgggtgacattggtgacgttggccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggt 38933623  T
Q  324 caat 327  Q
    ||||    
T  38933622 caat 38933619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 224 - 320
Target Start/End: Original strand, 6217227 - 6217323
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    ||||||||||||||  ||| |||| ||| |||||||||| | |||  ||||||| |||||||||||||||||||||||||||| || ||||||||||    
T  6217227 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgatt 6217323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 221 - 320
Target Start/End: Original strand, 14470592 - 14470691
Alignment:
Q  221 tgtgtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||||||||||||||||  ||| |||| ||| |||| ||||| | ||| |  ||||| |||||||||||||||||||||||||||| |||||||||||||    
T  14470592 tgtgtgacatagagttgggtgacattggtgacattgaccaatcacaatgttgcaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgatt 14470691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 224 - 319
Target Start/End: Complemental strand, 37961841 - 37961746
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgat 319  Q
    ||||||||||||||  |||||||  ||| |||| ||||| | |||  ||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  37961841 gtgacatagagttgagtgatatttgtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattatggcattgtgat 37961746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 320
Target Start/End: Original strand, 14229356 - 14229452
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||||||||||||   ||| |||| ||| ||||| |||| | ||| |||||||| ||||||||||||||||||||||| |||| |||||||||||||    
T  14229356 gtgacatagagttcggtgacattggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgatt 14229452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 341
Target Start/End: Complemental strand, 8534259 - 8534164
Alignment:
Q  246 tgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcac 341  Q
    |||||||||||| |||||| ||| |||||||  |||||||| ||||||||||||||| ||| | ||||||| |||  ||||| |||||||||||||    
T  8534259 tgatgatattggtcaattacaatgtcacaattcttgtgaaatagagagaaacacaaatatttttacattgtaattgatcaatgtcatcaatgtcac 8534164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 356
Target Start/End: Original strand, 29508741 - 29508826
Alignment:
Q  271 cacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||||| ||||||||||||||||||||||| ||||  | |||||||||| | |||| ||| |||| ||||| |||||||||||||    
T  29508741 cacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcaccaatatcacccaactctatgtcac 29508826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 2828690 - 2828623
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||||||||| | ||| |||||||| || |||||||||||||||||||| |||| |||||||||||||    
T  2828690 attggccaatcacaatgtcacaatgcttctgaaagagagagaaacacaagcattttgacattgtgatt 2828623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 29925580 - 29925669
Alignment:
Q  231 agagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||||||  |||||||| ||| |||||||  | | ||| ||| |||| |||||||||||||||||||||||||||| || ||||||||||    
T  29925580 agagttgggtgatattggtgacattggcccctcacaatgtcagaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgatt 29925669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 356
Target Start/End: Original strand, 9173044 - 9173116
Alignment:
Q  284 aaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||| ||||||| |||| |||| || |||||||||| | |||||||| |||||||||| |||||||||||||    
T  9173044 aaagaaagagaaatacaagcattgtggcattgtgattggccaatatcaccaatgtcacccaactctatgtcac 9173116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 45213892 - 45213937
Alignment:
Q  313 ttgtgatttgtcaatatcatcaatgtcacctaactctatgtcacac 358  Q
    |||||||| |||||| |||||||||||||| |||||||||||||||    
T  45213892 ttgtgattggtcaatgtcatcaatgtcacccaactctatgtcacac 45213937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 14470641 - 14470593
Alignment:
Q  310 acattgtgatttgtcaatatcatcaatgtcacctaactctatgtcacac 358  Q
    ||||||||||| |||||| ||| |||||||||| |||||||||||||||    
T  14470641 acattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacac 14470593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 6722027 - 6722086
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    |||||||||| ||||||||||||| | ||||||||  ||||||| | |||||||||||||    
T  6722027 cacaaacattgtgacattgtgattggccaatatcactaatgtcaaccaactctatgtcac 6722086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 16514500 - 16514559
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||| |||| ||||||||||||| |||||| ||| |||| ||||| |||||||||||||    
T  16514500 cacaagcattgtgacattgtgattggtcaatgtcaccaatctcacccaactctatgtcac 16514559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 2894052 - 2894002
Alignment:
Q  270 tcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||||||| |||||||||||||||||| |||| |||| ||| |||||||||    
T  2894052 tcacaatgcttgtgaaagagagagaaatacaagcattgtgagattgtgatt 2894002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 33018621 - 33018679
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtca 355  Q
    ||||| |||| |||||||||||||   |||||||| |||||||||| ||||||||||||    
T  33018621 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtca 33018679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 358
Target Start/End: Complemental strand, 24116058 - 24115921
Alignment:
Q  221 tgtgtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||||||||||||||||  ||  |||  ||||||||| |||| | ||| || ||||| ||||||||||| | ||||||||  |||| | |||||||||||    
T  24116058 tgtgtgacatagagttgggtgccattagtgatattggtcaatcacaatgtcgcaatgcttgtgaaagagtgtgaaacacaggcattgtaacattgtgatt 24115959  T
Q  321 tgtcaatatcatcaatgtcacctaactctatgtcacac 358  Q
     | |||| | | |||||| ||  |||||||| ||||||    
T  24115958 ggccaatgttaccaatgtgactcaactctatctcacac 24115921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 356
Target Start/End: Complemental strand, 32545923 - 32545789
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaac---attatgacattgtgatt 320  Q
    |||||||||||||   ||| |||| ||| |||||||||| ||||| |||||||| || ||||||||||| ||| | ||||    || |||||| ||| ||    
T  32545923 gtgacatagagtttagtgacattggtgacattggccaatcataatgtcacaatgcttatgaaagagagataaa-aaaaacttacttgtgacatcgtggtt 32545825  T
Q  321 tgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
       |||| ||| ||||||||||||||||||||||||    
T  32545824 gaccaatgtcaccaatgtcacctaactctatgtcac 32545789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 320
Target Start/End: Complemental strand, 14892395 - 14892300
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||||||||||||| |||| |||| ||| ||||  |||| | ||| | |||||  || ||||||||||||||| ||||||| | |||||||||||||    
T  14892395 gtgacatagagttggatgacattggtgacattgatcaatcacaatgttacaatacttatgaaagagagagaaagacaaaca-tgtgacattgtgatt 14892300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 222 - 358
Target Start/End: Original strand, 7048 - 7183
Alignment:
Q  222 gtgtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgattt 321  Q
    ||||||||||||||||  ||| |||| ||||||| |||||| | ||| |||||||| ||||||||||||||||||||||| |||| |||||||||||||     
T  7048 gtgtgacatagagttgggtgacattggtgatattagccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattg 7147  T
Q  322 gtcaatatcatcaatgtcacctaactctatgtcacac 358  Q
    | |||| ||| |||||||||| |||||||||||||||    
T  7148 gccaatgtcaccaatgtcacc-aactctatgtcacac 7183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 7109 - 7048
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcacac 358  Q
    ||||| |||| ||||||||||||| |  ||||||| |||||||||| |||||||||||||||    
T  7109 cacaagcattgtgacattgtgattggctaatatcaccaatgtcacccaactctatgtcacac 7048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 225 - 356
Target Start/End: Original strand, 51046077 - 51046208
Alignment:
Q  225 tgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtc 324  Q
    ||||||||||||| ||||||||| ||| ||||  |||| ||||| |||||||| ||||||||||||||||||||||| ||||||| |||||||||| | |    
T  51046077 tgacatagagttggatgatattggtgacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattatggcattgtgattggcc 51046176  T
Q  325 aatatcatcaatgtcacctaactctatgtcac 356  Q
    ||| ||| |||||||| | |||||||||||||    
T  51046177 aatgtcaccaatgtcatccaactctatgtcac 51046208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 253 - 358
Target Start/End: Complemental strand, 33689282 - 33689177
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatg 352  Q
    |||||||||| | ||| |||||||| ||||||||||||||||||||||| |||| |||||||||||||   ||||||||||||||||||| |||||||||    
T  33689282 attggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatatcatcaatgtcacccaactctatg 33689183  T
Q  353 tcacac 358  Q
    ||||||    
T  33689182 tcacac 33689177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 221 - 356
Target Start/End: Original strand, 30734402 - 30734537
Alignment:
Q  221 tgtgtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    ||||||||||||||||   ||| |||||||| |||| || || | ||| |||||||| |||||||||| ||||||||||||  |||||||||||||||||    
T  30734402 tgtgtgacatagagtttggtgacattgatgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgatt 30734501  T
Q  321 tgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
     | |||| ||| ||||||||||||||||||||||||    
T  30734502 ggccaatgtcaccaatgtcacctaactctatgtcac 30734537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 224 - 356
Target Start/End: Complemental strand, 41753099 - 41752967
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    ||||||||||||||  ||| |||| ||| |||||||||| | |||  ||||||| |||||||||||| ||||||||||||||| || |||||||||| |     
T  41753099 gtgacatagagttgagtgacattggtgacattggccaatcacaatgccacaatgcttgtgaaagagaaagaaacacaaacattgtggcattgtgattggc 41753000  T
Q  324 caatatcatcaatgtcacctaactctatgtcac 356  Q
    |||| ||| |||||||||| |||||||||||||    
T  41752999 caatgtcaccaatgtcacccaactctatgtcac 41752967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 356
Target Start/End: Original strand, 47492070 - 47492182
Alignment:
Q  244 attgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacct 343  Q
    |||| ||| |||||||||| | ||| |||||||| |||||||| |||||||||||||| |||| ||||||||||||| | |||||| | ||||||||||     
T  47492070 attggtgacattggccaatcacaatgtcacaatgcttgtgaaaaagagagaaacacaagcattgtgacattgtgattggccaatatgaccaatgtcaccc 47492169  T
Q  344 aactctatgtcac 356  Q
    |||||||||||||    
T  47492170 aactctatgtcac 47492182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 249 - 358
Target Start/End: Complemental strand, 55223342 - 55223233
Alignment:
Q  249 tgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactc 348  Q
    ||||||||| |||| ||||| |||||||| |||||||||||||||||||| ||  ||| | | |||||||||   |||||||| ||||||||||||||||    
T  55223342 tgatattggtcaatcataatgtcacaatgcttgtgaaagagagagaaacataagtattctaatattgtgattgaccaatatcaccaatgtcacctaactc 55223243  T
Q  349 tatgtcacac 358  Q
    ||||||||||    
T  55223242 tatgtcacac 55223233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 224 - 355
Target Start/End: Complemental strand, 50524837 - 50524706
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    ||||||||||||||  ||| |||| ||||||| | |||| | ||| | || ||| |||||||||||||||||||||||||||| ||||||| ||||| ||    
T  50524837 gtgacatagagttgagtgacattggtgatattagtcaatcacaatgttacgatgcttgtgaaagagagagaaacacaaacattgtgacattatgattggt 50524738  T
Q  324 caatatcatcaatgtcacctaactctatgtca 355  Q
    |||| |||||| | ||||  ||||||||||||    
T  50524737 caatgtcatcattatcactcaactctatgtca 50524706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 224 - 320
Target Start/End: Original strand, 1801449 - 1801545
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    ||||||||||||||  ||| |||| ||| |||||||||| | |||  ||||||| |||||||||||||||||||||||||||| || ||||||||||    
T  1801449 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgatt 1801545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 29031742 - 29031809
Alignment:
Q  249 tgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgt 316  Q
    ||||||||| |||| | ||| |||||||| |||||||||||||||||||||||||||| |||||||||    
T  29031742 tgatattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgt 29031809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 30476506 - 30476573
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||||||||| | ||| |||||||| ||||||||||||||||||||||| |||| |||||||||||||    
T  30476506 attggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgatt 30476573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 224 - 355
Target Start/End: Original strand, 30580759 - 30580890
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    |||||||||| |||  ||| |||| |||||||| ||||| ||||| |||||||  |||||||||||| |||||||||| || | |||||||||||||       
T  30580759 gtgacatagaattgggtgacattggtgatattgaccaatcataatgtcacaatatttgtgaaagagatagaaacacaagcactgtgacattgtgattgac 30580858  T
Q  324 caatatcatcaatgtcacctaactctatgtca 355  Q
    |||| |||  ||||||||| || |||||||||    
T  30580859 caatgtcacaaatgtcacccaattctatgtca 30580890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 356
Target Start/End: Original strand, 43139762 - 43139844
Alignment:
Q  274 aatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    |||| ||||||||||||||||||||||| |||| || |||||| ||| | |||| ||| |||||||||| |||||||||||||    
T  43139762 aatgcttgtgaaagagagagaaacacaagcattgtggcattgttattggccaatgtcaccaatgtcacccaactctatgtcac 43139844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 47677304 - 47677354
Alignment:
Q  270 tcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  47677304 tcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgatt 47677354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 30734464 - 30734403
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcacac 358  Q
    ||||| |||| ||||||||||||  |||||| |||||||||||||| |||||||||||||||    
T  30734464 cacaagcattgtgacattgtgatcggtcaatgtcatcaatgtcaccaaactctatgtcacac 30734403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 45103171 - 45103112
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||| |||| |||||||||||||  ||||||||| |||||||||| |||||||||||||    
T  45103171 cacaagcattgtgacattgtgattgatcaatatcaccaatgtcacccaactctatgtcac 45103112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 342
Target Start/End: Complemental strand, 50550075 - 50549992
Alignment:
Q  259 caattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacc 342  Q
    |||| ||||| ||| |||| ||||||||||||||||||||||| |||| | | ||||||||| |||||| ||| |||| |||||    
T  50550075 caatcataatgtcataatgtttgtgaaagagagagaaacacaagcattgtaatattgtgattggtcaatgtcaccaatatcacc 50549992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 353
Target Start/End: Complemental strand, 18321763 - 18321657
Alignment:
Q  247 gatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaac 346  Q
    ||||| ||||| |||| | ||| ||||||||  ||||||| ||||| |||||||||| || |||||||||||||   |||| ||| |||| ||||| |||    
T  18321763 gatgacattggtcaatcacaatgtcacaatgcatgtgaaaaagagaaaaacacaaactttgtgacattgtgattgaccaatgtcaccaatatcacccaac 18321664  T
Q  347 tctatgt 353  Q
    |||||||    
T  18321663 tctatgt 18321657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 310
Target Start/End: Complemental strand, 34060297 - 34060234
Alignment:
Q  247 gatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatga 310  Q
    ||||||||| | |||| | |||||||||||  || ||||||||||| |||||||||||||||||    
T  34060297 gatgatatttgtcaatcacaatatcacaatacttatgaaagagagaaaaacacaaacattatga 34060234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 33689176 - 33689238
Alignment:
Q  221 tgtgtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtg 283  Q
    |||||||||||||||||  ||| |||||||||||||| |||| | ||| |||||||| |||||    
T  33689176 tgtgtgacatagagttgggtgacattgatgatattggtcaatcacaatgtcacaatgcttgtg 33689238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 353
Target Start/End: Original strand, 39057024 - 39057089
Alignment:
Q  288 agagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgt 353  Q
    ||||||||||||||||||  ||||||||| |||   | || ||| |||||||||||||||||||||    
T  39057024 agagagaaacacaaacatcgtgacattgtcattgtccgatgtcaccaatgtcacctaactctatgt 39057089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 49418719 - 49418780
Alignment:
Q  249 tgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatga 310  Q
    ||||||||| |||| | ||| ||| |||  ||||||||||||||||||||||| ||||||||    
T  49418719 tgatattggtcaatcacaatgtcataatatttgtgaaagagagagaaacacaagcattatga 49418780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 292
Target Start/End: Original strand, 45103112 - 45103180
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagaga 292  Q
    ||||||||||||||  ||| |||| ||||||||  |||| | ||| |||||||| ||||||||||||||    
T  45103112 gtgacatagagttgggtgacattggtgatattgatcaatcacaatgtcacaatgcttgtgaaagagaga 45103180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 356
Target Start/End: Complemental strand, 5033296 - 5033164
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    ||||||||||||||  ||| |||| ||| |||| ||||| | ||| |||||||| ||||||||||||||||||||||| |||| || |||||||||| ||    
T  5033296 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggt 5033197  T
Q  324 caatatcatcaatgtcacctaactctatgtcac 356  Q
    |||| ||| |||||||||| |||||||||||||    
T  5033196 caatgtcaccaatgtcacccaactctatgtcac 5033164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 225 - 356
Target Start/End: Complemental strand, 10086891 - 10086760
Alignment:
Q  225 tgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtc 324  Q
    |||||||||||||  ||| |||| ||| |||| ||||| | ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||   |    
T  10086891 tgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattgacc 10086792  T
Q  325 aatatcatcaatgtcacctaactctatgtcac 356  Q
    ||| |||  ||||||||| || ||||||||||    
T  10086791 aatgtcactaatgtcacccaattctatgtcac 10086760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 224 - 356
Target Start/End: Complemental strand, 5667232 - 5667100
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    |||||||||||||  |||| |||| ||| |||||||||||| ||| ||| |||| |||||||||||||||||| |||| |||| |||||||||||||       
T  5667232 gtgacatagagtttgatgacattggtgacattggccaattacaatgtcataatgcttgtgaaagagagagaaatacaagcattgtgacattgtgattgac 5667133  T
Q  324 caatatcatcaatgtcacctaactctatgtcac 356  Q
    |||| ||| |||||||| | |||||||||||||    
T  5667132 caatgtcaccaatgtcatccaactctatgtcac 5667100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 224 - 356
Target Start/End: Original strand, 33841594 - 33841726
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    ||||||||||||||  ||| |||| ||| |||| ||||| | | | |||||||| ||||||||||||||||||||||| |||| || |||| ||||| ||    
T  33841594 gtgacatagagttgggtgacattggtgacattgaccaatcacattgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattctgattggt 33841693  T
Q  324 caatatcatcaatgtcacctaactctatgtcac 356  Q
    |||| ||| |||||||||| |||||||||||||    
T  33841694 caatgtcaccaatgtcacccaactctatgtcac 33841726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 224 - 356
Target Start/End: Original strand, 35440972 - 35441104
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    ||||| ||||||||  ||| |||| ||| |||| ||||| | ||| |||||||| ||||||||||||||||||||||| |||| || |||||||||| |     
T  35440972 gtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggc 35441071  T
Q  324 caatatcatcaatgtcacctaactctatgtcac 356  Q
    |||| ||| |||||||||| |||||||||||||    
T  35441072 caatgtcaccaatgtcacccaactctatgtcac 35441104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 225 - 356
Target Start/End: Original strand, 43844475 - 43844604
Alignment:
Q  225 tgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtc 324  Q
    |||||||||||||  ||||||||||||||||||  ||| ||||| |||  ||| ||||||  ||||||||||||||| |||| |||||||||||||  ||    
T  43844475 tgacatagagttgggtgatattgatgatattggttaatcataatgtcaggatgcttgtga--gagagagaaacacaagcattgtgacattgtgattgatc 43844572  T
Q  325 aatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||||| |||||||| | |||||||||||||    
T  43844573 aatatcaccaatgtcatccaactctatgtcac 43844604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 221 - 356
Target Start/End: Complemental strand, 8796560 - 8796425
Alignment:
Q  221 tgtgtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||||||||||||| |   |||||||| ||| |||| ||||| | ||| |||||||| |||||||||| |||||||||||| |||| |||||||||||||    
T  8796560 tgtgtgacatagagctaggtgatattggtgacattgaccaatcaaaatgtcacaatgcttgtgaaagatagagaaacacaagcattgtgacattgtgatt 8796461  T
Q  321 tgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
       ||||||||  ||| |||||||||||||||||||    
T  8796460 gaccaatatcacaaatatcacctaactctatgtcac 8796425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 224 - 327
Target Start/End: Complemental strand, 6296740 - 6296637
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    |||| ||||||||| |||| |||  ||| ||| | |||||||||| |||||||  ||||||||||||||||||||||| |||||||||||||||||| ||    
T  6296740 gtgatatagagttggatgacattagtgacattagtcaattataatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggt 6296641  T
Q  324 caat 327  Q
    ||||    
T  6296640 caat 6296637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 224 - 358
Target Start/End: Complemental strand, 4958733 - 4958601
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    |||||||||||||  ||||||||  ||| |||| ||||| | ||  |||||||  |||||||||||||||||||||||||||||||||||||||||| |     
T  4958733 gtgacatagagttagatgatattagtgacattgaccaatcacaag-tcacaatacttgtgaaagagagagaaacacaaacattatgacattgtgattggc 4958635  T
Q  324 caatatcatcaatgtcacctaactctatgtcacac 358  Q
    |||| |||||||| ||| | || ||||||||||||    
T  4958634 caatgtcatcaatatca-caaattctatgtcacac 4958601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 224 - 356
Target Start/End: Original strand, 45191130 - 45191262
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    |||||||||||||| ||||||||| ||| ||||   ||| | |||  ||||||| || ||||||||||||||||||||||||| | ||||| ||||| ||    
T  45191130 gtgacatagagttggatgatattggtgacattgattaatcacaatgccacaatgcttatgaaagagagagaaacacaaacattgtaacattttgattggt 45191229  T
Q  324 caatatcatcaatgtcacctaactctatgtcac 356  Q
    |||| ||| |||| ||| | |||||||||||||    
T  45191230 caatgtcaccaatatcatccaactctatgtcac 45191262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 253 - 358
Target Start/End: Complemental strand, 34229747 - 34229642
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatg 352  Q
    ||||| |||| | |||||||||||| ||||||||||||||||||||||| |||| |||||||||||||     || |||  ||||||||| |||||||||    
T  34229747 attggtcaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattctgacattgtgattgactcatgtcactaatgtcacccaactctatg 34229648  T
Q  353 tcacac 358  Q
    ||||||    
T  34229647 tcacac 34229642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 356
Target Start/End: Original strand, 8243438 - 8243523
Alignment:
Q  271 cacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||||| ||||||||||||||||||||||| |||| || ||||||||||   |||  ||| |||||||||| |||||||||||||    
T  8243438 cacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaacgtcaccaatgtcacccaactctatgtcac 8243523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 34541835 - 34541888
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacatt 306  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||| ||||    
T  34541835 attggccaatcataatatcacaatgcttgtgaaagagagagaaacacaagcatt 34541888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 320
Target Start/End: Complemental strand, 39851089 - 39850994
Alignment:
Q  225 tgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    ||||||| |||||  ||| |||| ||| |||| ||||| | ||||| | |||| |||||||||||||||||||||||||||| || ||||||||||    
T  39851089 tgacataaagttgagtgacattggtgacattgaccaatcacaatattataatgcttgtgaaagagagagaaacacaaacattgtggcattgtgatt 39850994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 10086833 - 10086891
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtca 355  Q
    |||||||||| ||||||||||||| |||||| ||| |||||||||| ||||||||||||    
T  10086833 cacaaacattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtca 10086891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 5033237 - 5033296
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||| |||| ||||||||||||| |||||| ||| |||||||||| |||||||||||||    
T  5033237 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 5033296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 31159970 - 31159912
Alignment:
Q  240 tgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaaca 298  Q
    |||||||| ||| ||| |||||| ||||| |||||||| ||||||||||||||||||||    
T  31159970 tgatattggtgacattcgccaatcataatgtcacaatgcttgtgaaagagagagaaaca 31159912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 356
Target Start/End: Complemental strand, 2581895 - 2581828
Alignment:
Q  289 gagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||||||||||| |||| || |||||||||| | |||| ||| |||||||||| || ||||||||||    
T  2581895 gagagaaacacaagcattgtggcattgtgattggccaatgtcaacaatgtcacccaattctatgtcac 2581828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 33841653 - 33841594
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||| |||| ||||| ||||||| |||||| ||| |||||||||| |||||||||||||    
T  33841653 cacaagcattgtgacaatgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 33841594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 35441031 - 35440972
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||| |||| ||||||||||||| |||||| ||| |||||||||| ||||||| |||||    
T  35441031 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcac 35440972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 8796498 - 8796559
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcacac 358  Q
    ||||| |||| ||||||| ||||| |||||| ||| |||| ||||||| |||||||||||||    
T  8796498 cacaagcattgtgacattttgattggtcaatgtcaccaatatcacctagctctatgtcacac 8796559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 356
Target Start/End: Complemental strand, 19655293 - 19655161
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    ||||||||||||||  ||| |||| ||| |||| ||||| | ||| |||||||| |||||||||||||||||||||||||||| || |||||||||| |     
T  19655293 gtgacatagagttgagtgacattggtgacattgtccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggc 19655194  T
Q  324 caatatcatcaatgtcacctaactctatgtcac 356  Q
    |||| ||| |||||||||| |||||||||||||    
T  19655193 caatgtcaccaatgtcacccaactctatgtcac 19655161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 224 - 342
Target Start/End: Complemental strand, 29699502 - 29699384
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    ||||||||||||||  |||||||| ||| |||||||||| | ||| |||||||| ||||||||||||||||||||||| |||| || |||||||||| |     
T  29699502 gtgacatagagttgggtgatattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggc 29699403  T
Q  324 caatatcatcaatgtcacc 342  Q
    |||| ||| ||||||||||    
T  29699402 caatgtcaccaatgtcacc 29699384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 221 - 358
Target Start/End: Complemental strand, 12913941 - 12913804
Alignment:
Q  221 tgtgtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||||||||||||||||  ||| |||| ||||||||| |||| | ||| ||| |||| |||||||||||||||| ||||||  ||| |||||||||||||    
T  12913941 tgtgtgacatagagttgggtgacattggtgatattggtcaatcacaatgtcataatgcttgtgaaagagagagatacacaagaattgtgacattgtgatt 12913842  T
Q  321 tgtcaatatcatcaatgtcacctaactctatgtcacac 358  Q
     | |||| ||| |||||||||  |||| ||||||||||    
T  12913841 ggccaatgtcaccaatgtcactcaactatatgtcacac 12913804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 224 - 320
Target Start/End: Complemental strand, 28819052 - 28818956
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    ||||||||||||||  |||||||| ||| ||||| |||| ||||| |||||||| |||||||||||||||||| ||||  ||| |||||||||||||    
T  28819052 gtgacatagagttgagtgatattggtgacattggtcaatcataatgtcacaatgcttgtgaaagagagagaaatacaagtattgtgacattgtgatt 28818956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 224 - 331
Target Start/End: Original strand, 2093940 - 2094047
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    ||||||||||||||  |||||||| ||| ||||  |||| | ||| ||| |||| ||||||||||||||||||||||| |||||||| | ||||||| ||    
T  2093940 gtgacatagagttgggtgatattggtgacattgatcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattatgatagtgtgattagt 2094039  T
Q  324 caatatca 331  Q
    ||||||||    
T  2094040 caatatca 2094047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 356
Target Start/End: Complemental strand, 291232 - 291100
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    |||| |||||||||  ||| |||| ||| ||||  |||| | ||| |||||||| |||||||||||| ||||| |||| |||| || |||||||||| |     
T  291232 gtgatatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgtttgtgaaagagaaagaaatacaagcattgtggcattgtgattggc 291133  T
Q  324 caatatcatcaatgtcacctaactctatgtcac 356  Q
    |||| ||| |||||||||| |||||||||||||    
T  291132 caatgtcaccaatgtcacccaactctatgtcac 291100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 320
Target Start/End: Complemental strand, 16971279 - 16971183
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    ||||||||||||||  ||| |||| ||| |||| ||||| | ||| |||||||| ||||||||||||||||||||||| |||| || ||||||||||    
T  16971279 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgatt 16971183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 224 - 355
Target Start/End: Original strand, 30117831 - 30117962
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    |||| |||||||||  ||| |||| |||||||| ||||| | ||| |||||||| || ||||| |||||||||||||| |||| || |||| |||||       
T  30117831 gtgatatagagttgggtgacattggtgatattgaccaatcacaatgtcacaatgtttatgaaaaagagagaaacacaagcattgtggcattatgattgac 30117930  T
Q  324 caatatcatcaatgtcacctaactctatgtca 355  Q
    |||||||| |||||||| | ||||||||||||    
T  30117931 caatatcaccaatgtcatccaactctatgtca 30117962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 2953325 - 2953243
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacatt 306  Q
    ||||||||||||||  ||| |||| ||| |||||||||| | ||| |||||||| ||||||||||||||||||||||| ||||    
T  2953325 gtgacatagagttgggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 2953243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 333
Target Start/End: Original strand, 38134404 - 38134485
Alignment:
Q  252 tattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatc 333  Q
    ||||||||||| | ||| |||||||| | |||||||||| |||||||||| |||| ||||||||||||| | ||||||||||    
T  38134404 tattggccaatcacaatgtcacaatgctagtgaaagagaaagaaacacaagcattgtgacattgtgattggccaatatcatc 38134485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 224 - 320
Target Start/End: Complemental strand, 3899974 - 3899878
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    ||||| ||||||||  ||| |||| ||| |||| ||||| | ||| |||||||| ||||||||||||||||||||||| |||| || ||||||||||    
T  3899974 gtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgatt 3899878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 358
Target Start/End: Original strand, 3180098 - 3180196
Alignment:
Q  259 caattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcacac 358  Q
    |||| ||||| |||||||| ||||||||||||||||||||||| |||| || ||||||||||   |||| ||| |||||| ||| |||||||||| ||||    
T  3180098 caatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgtcaccaatgttacc-aactctatgtgacac 3180196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 16439227 - 16439177
Alignment:
Q  270 tcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||||||| ||||||||||||||||||||||| |||| |||||||||||||    
T  16439227 tcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgatt 16439177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 39031199 - 39031285
Alignment:
Q  269 atcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtca 355  Q
    ||||||||| |||||||||| ||||||| ||||| ||||||| |||||||||  ||| | ||| ||||||||||  |||||||||||    
T  39031199 atcacaatgcttgtgaaagaaagagaaatacaaatattatgatattgtgattgatcagtgtcaccaatgtcaccccactctatgtca 39031285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 12913879 - 12913940
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcacac 358  Q
    ||||| ||||||||||||||||||   |||||||| |||||||||| |||||||||||||||    
T  12913879 cacaagcattatgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcacac 12913940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 13312320 - 13312267
Alignment:
Q  303 cattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    |||| |||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  13312320 cattgtgacattgtgattgatcaatgtcatcaatgtcacctaactctatgtcac 13312267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 30117887 - 30117831
Alignment:
Q  300 aaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||    
T  30117887 aaacattgtgacattgtgattggtcaatatcaccaatgtcacccaactctatatcac 30117831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 353
Target Start/End: Original strand, 2935883 - 2935961
Alignment:
Q  274 aatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgt 353  Q
    |||| |||| ||||| ||||||||||||||||| |||||||||| ||  ||||||||| |||||||||| |||| |||||    
T  2935883 aatgtttgtaaaagatagagaaacacaaacattgtgacattgtggttgttcaatatca-caatgtcaccaaactttatgt 2935961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 16971220 - 16971279
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||| |||| ||||||||||||| |||||| ||| |||||||||| |||||||||||||    
T  16971220 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 16971279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 356
Target Start/End: Complemental strand, 19598417 - 19598335
Alignment:
Q  274 aatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    |||| ||||||||||||||||||||||| |||| ||  |||||||||   |||| ||| |||||| ||| |||||||||||||    
T  19598417 aatgcttgtgaaagagagagaaacacaagcattgtggtattgtgattgaccaatgtcaccaatgttacccaactctatgtcac 19598335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 316
Target Start/End: Complemental strand, 2356409 - 2356317
Alignment:
Q  221 tgtgtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgt 316  Q
    ||||||||||||||||| |||| |||| ||| |||||||||| |  || |||||||| || ||||  |||||||||||||| |||||| |||||||    
T  2356409 tgtgtgacatagagttggatgacattggtgacattggccaatca-catgtcacaatgcttatgaa--agagagaaacacaagcattataacattgt 2356317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 291173 - 291232
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    |||||||||| |||||||||||||  ||||| ||| |||||||||| |||||||| ||||    
T  291173 cacaaacattgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatatcac 291232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 2093999 - 2093940
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||| ||||||||||||||||||  ||||| ||| |||| ||||| |||||||||||||    
T  2093999 cacaagcattatgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcac 2093940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 2953266 - 2953325
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||| |||| ||||||||||||| | |||| ||| |||||||||| |||||||||||||    
T  2953266 cacaagcattgtgacattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 2953325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 3899915 - 3899974
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||| |||| ||||||||||||| |||||| ||| |||||||||| ||||||| |||||    
T  3899915 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcac 3899974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 16802550 - 16802483
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||| ||||| | ||| |||||||| |||| ||||||||||||||||||| ||| | |||||||||||    
T  16802550 attgaccaatcagaatgtcacaatgcttgtaaaagagagagaaacacaaatattgttacattgtgatt 16802483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 327
Target Start/End: Complemental strand, 26662538 - 26662431
Alignment:
Q  221 tgtgtgacatagagttgtatgatattgatgatattggccaatt-ataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgat 319  Q
    |||||||| ||||||||  |||||||| ||| ||||| ||| | | ||| |||||||  |||||||| |||||||||||||| || | | ||||||||||    
T  26662538 tgtgtgacttagagttgggtgatattggtgacattggtcaaatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgat 26662439  T
Q  320 ttgtcaat 327  Q
    | ||||||    
T  26662438 tggtcaat 26662431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 327
Target Start/End: Complemental strand, 26934133 - 26934026
Alignment:
Q  221 tgtgtgacatagagttgtatgatattgatgatattggccaatt-ataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgat 319  Q
    |||||||| ||||||||  |||||||| ||| ||||| ||| | | ||| |||||||  |||||||| |||||||||||||| || | | ||||||||||    
T  26934133 tgtgtgacttagagttgggtgatattggtgacattggtcaaatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgat 26934034  T
Q  320 ttgtcaat 327  Q
    | ||||||    
T  26934033 tggtcaat 26934026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 1638521 - 1638460
Alignment:
Q  295 aacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    |||||||||||| ||||||||||||| | ||||||||  ||| ||||| |||||||| ||||    
T  1638521 aacacaaacattgtgacattgtgattggccaatatcacaaatatcacccaactctatatcac 1638460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 356
Target Start/End: Complemental strand, 6271837 - 6271705
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    ||||||||||||||  |||||||| ||| |||||||||| | ||| |||||||| ||||||||||||||||||||||| |||| || |||||||||| |     
T  6271837 gtgacatagagttgagtgatattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggc 6271738  T
Q  324 caatatcatcaatgtcacctaactctatgtcac 356  Q
    |||| ||| |||| ||||| |||||||||||||    
T  6271737 caatgtcaccaatatcacccaactctatgtcac 6271705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 224 - 356
Target Start/End: Complemental strand, 51265580 - 51265448
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    ||||| ||||||||  ||| |||| ||| |||| ||||| ||||| |||||||| ||||||||||||||||||||||| |||| || |||||||||| |     
T  51265580 gtgacttagagttgggtgacattggtgacattgaccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggc 51265481  T
Q  324 caatatcatcaatgtcacctaactctatgtcac 356  Q
    |||| ||| |||||||||| |||||||||||||    
T  51265480 caatgtcaccaatgtcacccaactctatgtcac 51265448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 227 - 356
Target Start/End: Original strand, 23444275 - 23444404
Alignment:
Q  227 acatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaa 326  Q
    |||||||||||  ||| |||| ||| |||| ||||| | ||| |||||||| ||||||||||||||||||||||| |||| || |||||||||| | |||    
T  23444275 acatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaa 23444374  T
Q  327 tatcatcaatgtcacctaactctatgtcac 356  Q
    | ||| |||||||||| |||||||||||||    
T  23444375 tgtcaccaatgtcacccaactctatgtcac 23444404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 223 - 356
Target Start/End: Complemental strand, 35682302 - 35682169
Alignment:
Q  223 tgtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttg 322  Q
    ||||||||||||||   ||| |||| ||| |||| || || | ||| |||||||| |||||||||| ||||||||||||  ||||||||||||||||| |    
T  35682302 tgtgacatagagttaggtgacattggtgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattgg 35682203  T
Q  323 tcaatatcatcaatgtcacctaactctatgtcac 356  Q
     |||| ||| |||| |||||||||||||||||||    
T  35682202 ccaatgtcaccaatatcacctaactctatgtcac 35682169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 249 - 320
Target Start/End: Complemental strand, 40789289 - 40789218
Alignment:
Q  249 tgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||||||||||||| | ||| |||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  40789289 tgatattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgatt 40789218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 224 - 342
Target Start/End: Complemental strand, 47661977 - 47661859
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    ||||||||||||||  ||| |||| ||| |||| ||||| | ||| |||||||| ||||||||||||||||||||||| |||| || |||||||||| |     
T  47661977 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggc 47661878  T
Q  324 caatatcatcaatgtcacc 342  Q
    |||| ||| ||||||||||    
T  47661877 caatgtcaccaatgtcacc 47661859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 356
Target Start/End: Complemental strand, 47762734 - 47762611
Alignment:
Q  233 agttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcat 332  Q
    ||||| ||||||||| ||| ||||| |||  ||||| |||||||| |||||||||||||||||||| ||||||| | ||||||||||| |||||| |||     
T  47762734 agttggatgatattggtgacattggtcaaccataatgtcacaatgcttgtgaaagagagagaaacataaacattgtaacattgtgattggtcaatgtcac 47762635  T
Q  333 caatgtcacctaactctatgtcac 356  Q
     ||| ||||  | |||||||||||    
T  47762634 aaatatcactcagctctatgtcac 47762611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 331
Target Start/End: Complemental strand, 52028655 - 52028577
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatca 331  Q
    |||||||||| | ||| |||||||| |||||||||||||||||||||||||||| |||||| |||||| | ||||||||    
T  52028655 attggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacatcgtgattggccaatatca 52028577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 223 - 320
Target Start/End: Complemental strand, 53954746 - 53954649
Alignment:
Q  223 tgtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||||||||||||||  ||| |||| ||| |||| ||||||| ||| |||||||| ||||||||||| ||||||||| | |||| |||||||||||||    
T  53954746 tgtgacatagagttgggtgacattggtgacattgtccaattacaatgtcacaatgcttgtgaaagagtgagaaacactagcattgtgacattgtgatt 53954649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 28693949 - 28694012
Alignment:
Q  247 gatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatga 310  Q
    ||||| |||| ||||| | |||||||||||| ||||||||||||||||||||||||||||||||    
T  28693949 gatgacattgaccaatcacaatatcacaatgtttgtgaaagagagagaaacacaaacattatga 28694012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 269 - 356
Target Start/End: Original strand, 30861822 - 30861909
Alignment:
Q  269 atcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||||||| ||||||||||||||||||||||| |||| || |||||||||| | |||| ||| |||| ||| | |||||||||||||    
T  30861822 atcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatatcatccaactctatgtcac 30861909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 253 - 356
Target Start/End: Original strand, 26186048 - 26186149
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatg 352  Q
    ||||| |||| | ||| |||||||| |||||||||||  |||||||||| |||| ||| ||||||||| | |||| |||||||||| ||| |||||||||    
T  26186048 attggtcaatcacaatgtcacaatgcttgtgaaagag--agaaacacaagcattgtgaaattgtgattggccaatgtcatcaatgttacccaactctatg 26186145  T
Q  353 tcac 356  Q
    ||||    
T  26186146 tcac 26186149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 224 - 320
Target Start/End: Complemental strand, 42375145 - 42375049
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    ||||||||||||||  ||| |||| ||| ||||  |||| | ||| |||||||| ||||||||||||||||||||||| |||| || ||||||||||    
T  42375145 gtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgatt 42375049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 2325069 - 2325115
Alignment:
Q  310 acattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||    
T  2325069 acattgtgatttgtcaatgtcatcaatgtcaccaaactctatgtcac 2325115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 25818396 - 25818458
Alignment:
Q  244 attgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacatt 306  Q
    |||||||| ||||| |||| | ||| |||||||||||||||||||||||||||||||| ||||    
T  25818396 attgatgacattggtcaatcacaatgtcacaatgattgtgaaagagagagaaacacaatcatt 25818458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 35682242 - 35682302
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcaca 357  Q
    ||||| |||| ||||||||||||  |||||| ||| |||||||||||||||||||||||||    
T  35682242 cacaagcattgtgacattgtgatcggtcaatgtcaccaatgtcacctaactctatgtcaca 35682302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 45591448 - 45591495
Alignment:
Q  259 caattataatatcacaatgattgtgaaagagagagaaacacaaacatt 306  Q
    |||| ||||| |||||||| ||||||||||||||||||||||||||||    
T  45591448 caatcataatgtcacaatgcttgtgaaagagagagaaacacaaacatt 45591495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 47661918 - 47661977
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||| |||| ||||||||||||| |||||| ||| |||||||||| |||||||||||||    
T  47661918 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 47661977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 55090028 - 55090095
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    ||||| |||| | ||| |||||||| |||||||||||||||| |||||| |||| |||||||||||||    
T  55090028 attggtcaatcacaatgtcacaatgcttgtgaaagagagagagacacaagcattgtgacattgtgatt 55090095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 38714912 - 38714851
Alignment:
Q  270 tcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatca 331  Q
    |||||||| |||||||||| | ||||||| ||| ||||||||||||||||| | ||||||||    
T  38714912 tcacaatgtttgtgaaagaaatagaaacataaatattatgacattgtgattggccaatatca 38714851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 50384137 - 50384190
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacatt 306  Q
    |||||||||| | ||| |||||||| ||||||||||||||||||||||| ||||    
T  50384137 attggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcatt 50384190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 23444331 - 23444275
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgt 353  Q
    ||||| |||| ||||||||||||| |||||| ||| |||||||||| ||||||||||    
T  23444331 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgt 23444275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 30709987 - 30710035
Alignment:
Q  308 tgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||||||||||| | |||| ||| ||||||||||||||||||||||||    
T  30709987 tgacattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 30710035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 42375086 - 42375145
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||| |||| |||||||||||||  ||||| ||| |||||||||| |||||||||||||    
T  42375086 cacaagcattgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcac 42375145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 47404617 - 47404684
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    ||||| |||| | ||| |||||||| ||||||||||||||||||| ||| |||| || ||||||||||    
T  47404617 attggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacccaagcattgtggcattgtgatt 47404684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 356
Target Start/End: Original strand, 3862619 - 3862681
Alignment:
Q  294 aaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    |||||||| |||| || |||||||||| | |||| ||| |||||||||| |||||||||||||    
T  3862619 aaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 3862681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 356
Target Start/End: Original strand, 3871376 - 3871438
Alignment:
Q  294 aaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    |||||||| |||| || |||||||||| | |||| ||| |||||||||| |||||||||||||    
T  3871376 aaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 3871438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 44380019 - 44380065
Alignment:
Q  310 acattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||||||||| |||||||||| |||||||||  |||||||||||||    
T  44380019 acattgtgattggtcaatatcaccaatgtcactcaactctatgtcac 44380065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 24006102 - 24006155
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacatt 306  Q
    |||||||||| | |||  ||||||| |||||||||||||||||||| |||||||    
T  24006102 attggccaatcacaatgacacaatgcttgtgaaagagagagaaacataaacatt 24006155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 31532752 - 31532809
Alignment:
Q  284 aaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcac 341  Q
    ||||||||||||| ||||||||| |||| |||||||| |||||| ||| | |||||||    
T  31532752 aaagagagagaaatacaaacattgtgacgttgtgattggtcaatgtcacctatgtcac 31532809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 53954686 - 53954746
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcaca 357  Q
    ||||| |||| ||||||||| ||| | |||| ||| |||||||||| ||||||||||||||    
T  53954686 cacaagcattgtgacattgtaattggacaatgtcaccaatgtcacccaactctatgtcaca 53954746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 356
Target Start/End: Original strand, 48993920 - 48994052
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    ||||||||||||||  ||| |||| ||| |||| ||||| | ||| |||||||| ||||||||||||||||||||||| |||| || |||||||||| ||    
T  48993920 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggt 48994019  T
Q  324 caatatcatcaatgtcacctaactctatgtcac 356  Q
    |||| ||| |||||||||| |||||||||||||    
T  48994020 caatgtcaccaatgtcacccaactctatgtcac 48994052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 266 - 358
Target Start/End: Complemental strand, 9157403 - 9157311
Alignment:
Q  266 aatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcacac 358  Q
    |||||||||||| ||| ||||||||||||||||||| |||| ||||||||||||| |||||| | | |||||||||| |||||||||||||||    
T  9157403 aatatcacaatgcttgagaaagagagagaaacacaagcattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacac 9157311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 225 - 356
Target Start/End: Original strand, 29179601 - 29179732
Alignment:
Q  225 tgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtc 324  Q
    |||||||||||||  ||| |||| ||| | || ||||| | ||| |||||||| ||||||||||||||||||||||| |||| || |||||||||| | |    
T  29179601 tgacatagagttgggtgacattggtgacactgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggcc 29179700  T
Q  325 aatatcatcaatgtcacctaactctatgtcac 356  Q
    ||| ||| |||||||||| |||||||||||||    
T  29179701 aatgtcaccaatgtcacccaactctatgtcac 29179732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 269 - 356
Target Start/End: Original strand, 36290455 - 36290542
Alignment:
Q  269 atcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||||||| |||||||||||||||||||||||| ||| ||||||||||||| ||||||  || |||||||||| |||||||||||||    
T  36290455 atcacaatgcttgtgaaagagagagaaacacaaatattgtgacattgtgattggtcaatgccaccaatgtcacccaactctatgtcac 36290542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 253 - 356
Target Start/End: Complemental strand, 37155152 - 37155049
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatg 352  Q
    |||||||||| | ||| |||||||  ||||||||||||||||||||||| |||| ||||||||||||| | |||| ||| |||||||||| |||||||||    
T  37155152 attggccaatcacaatgtcacaatacttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcaccaatgtcaccaaactctatg 37155053  T
Q  353 tcac 356  Q
    ||||    
T  37155052 tcac 37155049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 356
Target Start/End: Original strand, 1091593 - 1091679
Alignment:
Q  270 tcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||  ||| |||| ||||| |||||||||||||    
T  1091593 tcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggtcaaagtcaccaatatcacccaactctatgtcac 1091679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 253 - 331
Target Start/End: Complemental strand, 47303501 - 47303423
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatca 331  Q
    ||||| |||| | ||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47303501 attggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattggtcaatatca 47303423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 224 - 356
Target Start/End: Complemental strand, 5995504 - 5995372
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    |||||||||||||| |||| |||| ||| |||| ||||| | |||  ||||||| ||||||||||||||||||||||| |||| || |||||||||| |     
T  5995504 gtgacatagagttggatgacattggtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggc 5995405  T
Q  324 caatatcatcaatgtcacctaactctatgtcac 356  Q
    |||| | | |||||||| | |||||||||||||    
T  5995404 caatgttaccaatgtcatcaaactctatgtcac 5995372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 228 - 356
Target Start/End: Original strand, 32540755 - 32540883
Alignment:
Q  228 catagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaat 327  Q
    ||||||||||  ||| |||| ||  |||||||||| | ||| |||||||| ||||||||||||||||||||||| |||| | ||||||||||| ||||||    
T  32540755 catagagttgggtgacattggtggcattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtaacattgtgattggtcaat 32540854  T
Q  328 atcatcaatgtcacctaactctatgtcac 356  Q
     ||| |||||||| | || ||||||||||    
T  32540855 gtcaccaatgtcatccaattctatgtcac 32540883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 253 - 356
Target Start/End: Original strand, 17127596 - 17127699
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatg 352  Q
    |||| ||||| | ||| |||||||| ||||||||||||||||||||||| |||| ||||||| ||||| |||||| |||  ||||||||||||||||||     
T  17127596 attgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattttgattggtcaatgtcactaatgtcacctaactctata 17127695  T
Q  353 tcac 356  Q
    ||||    
T  17127696 tcac 17127699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 320
Target Start/End: Complemental strand, 29371506 - 29371407
Alignment:
Q  221 tgtgtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||||||||||||| |   ||| |||| |||||||| ||||| | ||| |||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  29371506 tgtgtgacatagagctaggtgacattggtgatattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgatt 29371407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 358
Target Start/End: Complemental strand, 4609102 - 4608997
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatg 352  Q
    ||||| |||| | ||| |||||||| |||||||||||||||||||||||||||| ||||||||||||  |||||| ||| | |||||||| ||||| ||     
T  4609102 attggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgatgggtcaatgtcaccgatgtcacccaactccata 4609003  T
Q  353 tcacac 358  Q
    ||||||    
T  4609002 tcacac 4608997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 224 - 320
Target Start/End: Complemental strand, 15220946 - 15220850
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    ||||||||||||||  ||| |||| |||||||||||||| | ||| |||||||| ||||||||||||||||||||||| |||| ||| || ||||||    
T  15220946 gtgacatagagttgggtgacattggtgatattggccaatcacaatctcacaatgcttgtgaaagagagagaaacacaagcattgtgagatcgtgatt 15220850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 253 - 352
Target Start/End: Complemental strand, 45728393 - 45728294
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatg 352  Q
    ||||| |||| | ||| ||| |||| ||||||||||||||||||||||| |||| ||| ||||||||| |||||||||| |||| ||||| |||||||||    
T  45728393 attggtcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatatcaccaatatcacccaactctatg 45728294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 333
Target Start/End: Original strand, 46333972 - 46334058
Alignment:
Q  247 gatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatc 333  Q
    ||||| |||||||||| | ||| |||||||| |||||||||||||| |||||||| |||| ||||||||||||| |||||| |||||    
T  46333972 gatgacattggccaatcacaatgtcacaatgcttgtgaaagagagaaaaacacaagcattgtgacattgtgattggtcaatgtcatc 46334058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 21630118 - 21630045
Alignment:
Q  283 gaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||||||||||||||||| |||| ||||||||||||| |||||| ||| |||||||||| |||| ||||||||    
T  21630118 gaaagagagagaaacacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactttatgtcac 21630045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 271 - 356
Target Start/End: Original strand, 44706834 - 44706919
Alignment:
Q  271 cacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||||| ||||||||||||||||||||||| ||||  | |||||||||| | |||| ||| |||||||||| |||||||||||||    
T  44706834 cacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 44706919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 327
Target Start/End: Original strand, 8337883 - 8337957
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaat 327  Q
    ||||| |||| | ||| |||||||| |||||||||||||||||||||||||||| || |||||||||| ||||||    
T  8337883 attggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattgtggcattgtgattggtcaat 8337957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 29371444 - 29371505
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcacac 358  Q
    ||||| |||| ||||||||||||| |||||||||| |||||||||||| |||||||||||||    
T  29371444 cacaagcattgtgacattgtgattggtcaatatcaccaatgtcacctagctctatgtcacac 29371505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 741534 - 741600
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgat 319  Q
    |||| ||||| | ||| |||||||| ||||||||||||||||||||||| |||| ||||||||||||    
T  741534 attgcccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgat 741600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 353
Target Start/End: Complemental strand, 28395708 - 28395643
Alignment:
Q  288 agagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgt 353  Q
    |||||||||||||| |||| ||||||||||||| |||||| ||| |||||||||  ||||||||||    
T  28395708 agagagaaacacaagcattgtgacattgtgattggtcaatgtcaccaatgtcactcaactctatgt 28395643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 38674533 - 38674613
Alignment:
Q  249 tgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatca 331  Q
    |||||||||||||| | ||| |||||||| |||||||  |||||||||||||| |||| ||||||| ||||| | ||||||||    
T  38674533 tgatattggccaatcacaatgtcacaatgcttgtgaa--agagagaaacacaagcattgtgacattatgattggccaatatca 38674613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 48993979 - 48993920
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||| |||| ||||||||||||| |||||| ||| |||||||||| |||||||||||||    
T  48993979 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 48993920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 333
Target Start/End: Complemental strand, 33219705 - 33219599
Alignment:
Q  227 acatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaa 326  Q
    ||||||||||| |||| |||| ||| ||||  |||| | ||| ||| |||| |||||||||||||| |||||||| |||| | |||||||||||  ||||    
T  33219705 acatagagttggatgacattggtgacattgatcaatcacaatgtcataatgcttgtgaaagagagaaaaacacaagcattgtaacattgtgattgatcaa 33219606  T
Q  327 tatcatc 333  Q
    | |||||    
T  33219605 tgtcatc 33219599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 17127626 - 17127565
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcacac 358  Q
    ||||| |||| ||||||||||||| |||||| |||  |||||||||||||||||| ||||||    
T  17127626 cacaagcattgtgacattgtgattggtcaatgtcactaatgtcacctaactctatatcacac 17127565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 46932061 - 46932000
Alignment:
Q  295 aacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    |||||||||||| || |||||||||| | |||| ||| |||||||||| |||||||||||||    
T  46932061 aacacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 46932000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 356
Target Start/End: Complemental strand, 48498495 - 48498418
Alignment:
Q  279 ttgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    |||||||||||||||||||||||||||| ||  ||| |||||   |||| |||  ||||||||| |||||||||||||    
T  48498495 ttgtgaaagagagagaaacacaaacattgtggtattatgattgaccaatgtcacaaatgtcacccaactctatgtcac 48498418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 15220887 - 15220946
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||| |||| ||| ||||||||| | |||||||| |||||||||| |||||||||||||    
T  15220887 cacaagcattgtgagattgtgattggccaatatcaccaatgtcacccaactctatgtcac 15220946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 304
Target Start/End: Original strand, 28928811 - 28928862
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaaca 304  Q
    |||||||||| | ||| ||||| || ||||||||||||||||||||||||||    
T  28928811 attggccaatcacaatgtcacagtgcttgtgaaagagagagaaacacaaaca 28928862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 34062315 - 34062248
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||| ||||| | ||| |||||||| |||||||||||||||||||| || |||| || ||||||||||    
T  34062315 attgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacataagcattgtggcattgtgatt 34062248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 316
Target Start/End: Original strand, 5694942 - 5694984
Alignment:
Q  274 aatgattgtgaaagagagagaaacacaaacattatgacattgt 316  Q
    |||| |||||||||||||||||||||||| ||| |||||||||    
T  5694942 aatgcttgtgaaagagagagaaacacaaatattgtgacattgt 5694984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 29179659 - 29179601
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtca 355  Q
    ||||| |||| ||||||||||||| |||| | ||| |||||||||| ||||||||||||    
T  29179659 cacaagcattgtgacattgtgattggtcagtgtcaccaatgtcacccaactctatgtca 29179601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 33219649 - 33219705
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgt 353  Q
    ||||| ||||||||||||||||||  ||||| ||| |||||||| | ||||||||||    
T  33219649 cacaagcattatgacattgtgattgatcaatgtcaccaatgtcatccaactctatgt 33219705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 221 - 358
Target Start/End: Complemental strand, 17751040 - 17750904
Alignment:
Q  221 tgtgtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||||||||||||||||  |||||||||||| ||||||| || | ||| |||||||| |||||||||||||| ||| ||||||||| |||||||||||||    
T  17751040 tgtgtgacatagagttgggtgatattgatgacattggccgatcacaatgtcacaatgcttgtgaaagagagataaatacaaacattgtgacattgtgatt 17750941  T
Q  321 tgtcaatatcatcaatgtcacctaactctatgtcacac 358  Q
       |||| ||| |||||||| | |||||||||||||||    
T  17750940 gaccaatgtcaccaatgtcatc-aactctatgtcacac 17750904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 224 - 314
Target Start/End: Complemental strand, 13043592 - 13043502
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacatt 314  Q
    ||||||||||||||  |||||||| ||| |||||| ||| | |||||||||||| ||||||||||||||||||||||| |||| |||||||    
T  13043592 gtgacatagagttgagtgatattggtgacattggctaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattgtgacatt 13043502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 320
Target Start/End: Complemental strand, 12343232 - 12343139
Alignment:
Q  227 acatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||||||||||  ||| |||| ||| |||||||||| | ||| |||||||| ||||||||||||||||||||||| |||| || ||||||||||    
T  12343232 acatagagttgggtgagattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgatt 12343139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 10521881 - 10521948
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||||||||| | ||| |||||||| || |||||||||||||||||||| ||||||||||||||||||    
T  10521881 attggccaatcacaatgtcacaatgcttatgaaagagagagaaacacaagcattatgacattgtgatt 10521948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 270 - 356
Target Start/End: Complemental strand, 24587550 - 24587464
Alignment:
Q  270 tcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    |||||||| |||||||| || ||||||||||| |||| |||||||||||||   |||| |||  ||||||||| |||||||||||||    
T  24587550 tcacaatgcttgtgaaaaagcgagaaacacaagcattgtgacattgtgattgaccaatgtcactaatgtcacccaactctatgtcac 24587464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 326
Target Start/End: Original strand, 24618604 - 24618706
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    ||||||||||||||  ||| |||| ||| ||||  |||| | ||| ||| |||| || |||||||||||||||||||| |||| ||||||||||||| ||    
T  24618604 gtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcataatgcttatgaaagagagagaaacacaagcattgtgacattgtgattggt 24618703  T
Q  324 caa 326  Q
    |||    
T  24618704 caa 24618706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 356
Target Start/End: Original strand, 551215 - 551300
Alignment:
Q  271 cacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||||| ||||||||||||||||||||||| |||| || |||||||||| | |||| ||| |||| ||| | || ||||||||||    
T  551215 cacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatatcatccaattctatgtcac 551300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 24618657 - 24618604
Alignment:
Q  303 cattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||||||||||||||||  ||||| ||| |||||||||| |||||||||||||    
T  24618657 cattatgacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcac 24618604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 320
Target Start/End: Complemental strand, 31654385 - 31654344
Alignment:
Q  279 ttgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  31654385 ttgtgaaagagagagaaacacaagcattgtgacattgtgatt 31654344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 7384550 - 7384491
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    |||||||||||||||||||||||| |||||| |||  ||||||| | |||||||| ||||    
T  7384550 cacaaacattatgacattgtgattggtcaatgtcactaatgtcatccaactctatatcac 7384491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 17750978 - 17751039
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcacac 358  Q
    ||||| |||| ||||||||||||  | |||| |||||||| ||||| |||||||||||||||    
T  17750978 cacaagcattgtgacattgtgatcggccaatgtcatcaatatcacccaactctatgtcacac 17751039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 224 - 356
Target Start/End: Complemental strand, 11017004 - 11016872
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    ||||||||||||||  ||| |||| ||| |||| ||||| | ||| |||||||| ||||||||||||||||||||||| |||| || |||||||||| |     
T  11017004 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggc 11016905  T
Q  324 caatatcatcaatgtcacctaactctatgtcac 356  Q
    |||| ||| |||||||||| |||||||||||||    
T  11016904 caatgtcaccaatgtcacccaactctatgtcac 11016872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 253 - 356
Target Start/End: Original strand, 41018260 - 41018363
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatg 352  Q
    |||||||||| | ||| || ||||| |||||||||||||||||||| || |||| || |||||||||| |||||| ||| |||||||||| |||||||||    
T  41018260 attggccaatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatg 41018359  T
Q  353 tcac 356  Q
    ||||    
T  41018360 tcac 41018363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 224 - 356
Target Start/End: Complemental strand, 4290680 - 4290548
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    |||||||| |||||  ||| |||| ||| |||||||||| | ||| |||||||  ||||||||||||||||||||| | |||| || ||||||||||       
T  4290680 gtgacatacagttgggtgacattggtgacattggccaatcacaatgtcacaattcttgtgaaagagagagaaacacgagcattgtggcattgtgattgac 4290581  T
Q  324 caatatcatcaatgtcacctaactctatgtcac 356  Q
    |||||||| |||| ||||| |||||||||||||    
T  4290580 caatatcaccaatatcacccaactctatgtcac 4290548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 224 - 356
Target Start/End: Complemental strand, 38975940 - 38975808
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    |||||||||||||   ||| |||| ||| ||||  ||||||||||  ||||||| ||||||||||||||||||||||| |||| || ||||||||||       
T  38975940 gtgacatagagttaggtgacattggtgacattgatcaattataatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgac 38975841  T
Q  324 caatatcatcaatgtcacctaactctatgtcac 356  Q
    |||| | | |||||||||| |||||||||||||    
T  38975840 caatgttaccaatgtcacccaactctatgtcac 38975808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 22764753 - 22764820
Alignment:
Q  274 aatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcac 341  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||    
T  22764753 aatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatatcaccaatgtcac 22764820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 253 - 356
Target Start/End: Original strand, 34854727 - 34854830
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatg 352  Q
    |||||||||| | |||  ||||||| |||||||||||| ||||||||||||||| || ||||||||||   |||| ||| |||||||||| |||||||||    
T  34854727 attggccaatcacaatgccacaatgcttgtgaaagagatagaaacacaaacattgtggcattgtgattgaccaatgtcaccaatgtcacccaactctatg 34854826  T
Q  353 tcac 356  Q
    ||||    
T  34854827 tcac 34854830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 224 - 327
Target Start/End: Complemental strand, 42628430 - 42628327
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    ||||||||||||||  ||| |||| |||||||||||||| | ||| || ||||| |||||||||||||||||||| || |||| || |||||||||| ||    
T  42628430 gtgacatagagttgggtgacattggtgatattggccaatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattggt 42628331  T
Q  324 caat 327  Q
    ||||    
T  42628330 caat 42628327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 244 - 353
Target Start/End: Complemental strand, 15027657 - 15027548
Alignment:
Q  244 attgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacct 343  Q
    |||| ||| |||| ||||| | ||| |||||||| |||||||||||||||||||||||||||| ||  ||||||||| |||||| ||| ||||||||       
T  15027657 attggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggtattgtgattggtcaatgtcaccaatgtcaaac 15027558  T
Q  344 aactctatgt 353  Q
    ||||||||||    
T  15027557 aactctatgt 15027548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 271 - 358
Target Start/End: Original strand, 30217504 - 30217590
Alignment:
Q  271 cacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcacac 358  Q
    ||||||| |||||||||||||||||||| ||||||| ||| ||||||||| |  ||| |||||||||||| | |||||||||||||||    
T  30217504 cacaatgcttgtgaaagagagagaaacataaacattttgatattgtgattggcgaatgtcatcaatgtca-caaactctatgtcacac 30217590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 356
Target Start/End: Original strand, 45231908 - 45231985
Alignment:
Q  279 ttgtgaaagagagagaaacacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    |||||||||||||||||||| || |||| | ||||||||||| | |||| ||| |||||||||| |||||||||||||    
T  45231908 ttgtgaaagagagagaaacaaaagcattgtaacattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 45231985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 11016945 - 11017004
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    |||||||||| ||||||||||||| |||||| ||| |||||||||| |||||||||||||    
T  11016945 cacaaacattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 11017004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 27028825 - 27028892
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    ||||| |||| | ||| |||||||| || ||||||||||||||||||||||||| |||||||||||||    
T  27028825 attggacaatcacaatgtcacaatgcttctgaaagagagagaaacacaaacattgtgacattgtgatt 27028892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 320
Target Start/End: Original strand, 7671961 - 7672010
Alignment:
Q  271 cacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    ||||||| |||||||||||||||||||||||||||| || ||||||||||    
T  7671961 cacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgatt 7672010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 320
Target Start/End: Complemental strand, 48000869 - 48000776
Alignment:
Q  227 acatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||||||||||  ||| |||| ||| |||| ||||| | |||  |||||||  ||||||||||||||||||||||||||| || ||||||||||    
T  48000869 acatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgtctgtgaaagagagagaaacacaaacattgtggcattgtgatt 48000776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 29053366 - 29053413
Alignment:
Q  273 caatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    ||||| |||||||||||||||||||||||||||| || ||||||||||    
T  29053366 caatgcttgtgaaagagagagaaacacaaacattgtggcattgtgatt 29053413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 355
Target Start/End: Complemental strand, 41945990 - 41945859
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    |||||||| |||||  ||| |||| | ||||||| |||| | ||| | |||||| |||||||||||| | |||| |||||||||||||||| |||||       
T  41945990 gtgacataaagttgagtgacattggtaatattggtcaatcacaatgttacaatgcttgtgaaagagaaaaaaacgcaaacattatgacattatgattgac 41945891  T
Q  324 caatatcatcaatgtcacctaactctatgtca 355  Q
     ||| |||||||||||||  || |||||||||    
T  41945890 taatgtcatcaatgtcactcaattctatgtca 41945859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 42628383 - 42628430
Alignment:
Q  309 gacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    |||||||||||| | |||||||| |||||||||| |||||||||||||    
T  42628383 gacattgtgattggccaatatcaccaatgtcacccaactctatgtcac 42628430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 224 - 356
Target Start/End: Original strand, 27223 - 27355
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatttgt 323  Q
    ||||||||||||||  ||| |||  |||||||||||||| | ||| ||| |||  |||||||||||||||||||| || |||| || |||||||||| |     
T  27223 gtgacatagagttgggtgacattagtgatattggccaatcacaatgtcataattcttgtgaaagagagagaaacagaagcattgtggcattgtgattggc 27322  T
Q  324 caatatcatcaatgtcacctaactctatgtcac 356  Q
    |||||||| |||||||||| |||||||| ||||    
T  27323 caatatcaccaatgtcacccaactctatatcac 27355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 27275 - 27223
Alignment:
Q  304 attatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||||||||||||||| | ||||||||  ||||||||| |||||||||||||    
T  27275 attatgacattgtgattggccaatatcactaatgtcacccaactctatgtcac 27223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 221 - 310
Target Start/End: Original strand, 19122 - 19211
Alignment:
Q  221 tgtgtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatga 310  Q
    |||||||||||||||||  ||| |||||||||||||  |||| | ||| |||||||| ||||| |||| |||||||||||||||||||||    
T  19122 tgtgtgacatagagttgggtgacattgatgatattgatcaatcacaatgtcacaatgcttgtggaagaaagagaaacacaaacattatga 19211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 19184 - 19123
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcacac 358  Q
    ||||| |||| |||||||||||||  |||||||||||||||||||| |||||||||||||||    
T  19184 cacaagcattgtgacattgtgattgatcaatatcatcaatgtcacccaactctatgtcacac 19123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 320
Target Start/End: Original strand, 49706 - 49802
Alignment:
Q  224 gtgacatagagttgtatgatattgatgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    ||||||||||||||  ||| |||||||| |||| ||||| | ||| |||||||| |||||||||| |||||||||||| |||| || ||||||||||    
T  49706 gtgacatagagttgggtgacattgatgacattgaccaatcacaatgtcacaatgcttgtgaaagaaagagaaacacaagcattgtggcattgtgatt 49802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 49765 - 49706
Alignment:
Q  297 cacaaacattatgacattgtgatttgtcaatatcatcaatgtcacctaactctatgtcac 356  Q
    ||||| |||| ||||||||||||| |||||| |||||||||||||| |||||||||||||    
T  49765 cacaagcattgtgacattgtgattggtcaatgtcatcaatgtcacccaactctatgtcac 49706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 63863 - 63796
Alignment:
Q  253 attggccaattataatatcacaatgattgtgaaagagagagaaacacaaacattatgacattgtgatt 320  Q
    |||||||||| | ||| |||||||| |||||||||||||||||||||||||||| || ||||||||||    
T  63863 attggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgatt 63796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 2915 - 2972
Alignment:
Q  249 tgatattggccaattataatatcacaatgattgtgaaagagagagaaacacaaacatt 306  Q
    |||||||| ||||| | ||| |||||||| ||||||||||||||||||||||||||||    
T  2915 tgatattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacatt 2972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 2302 - 2266
Alignment:
Q  270 tcacaatgattgtgaaagagagagaaacacaaacatt 306  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  2302 tcacaatgcttgtgaaagagagagaaacacaagcatt 2266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 2302 - 2266
Alignment:
Q  270 tcacaatgattgtgaaagagagagaaacacaaacatt 306  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  2302 tcacaatgcttgtgaaagagagagaaacacaagcatt 2266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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