View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2085_1D_low_8 (Length: 425)
Name: NF2085_1D_low_8
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_low_8 |
 | |
|
| [»] scaffold0468 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 83 - 420
Target Start/End: Complemental strand, 3326721 - 3326384
Alignment:
| Q |
83 |
ctaaattgtttggtccgggaagtgtattaataattacaaccagagatgtacgcgtgcttaatttagttaaggttgactatgtatgtacaatgaaggaaat |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3326721 |
ctaaattgtttggtccgggaagtgtattaataattacaaccagagatgtacgcgtgcttaatttagttaaggttgactatgtatgtacaatgaaggaaat |
3326622 |
T |
|
| Q |
183 |
ggacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactactgtcaactctccaaaaaagtagttgcttat |
282 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3326621 |
ggacgaaaaggagtcccttgagcttttcagttggcatgcttttagacaacctagtccgatacaagactactgtaaactctccaaaaaagtagttgcttat |
3326522 |
T |
|
| Q |
283 |
cgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaacaagaatggataagtgtactcttgaaattagagagaattc |
382 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3326521 |
tgtggaggattaccagttgctcttgaagtccttggttcatacttatatgagaggacaaaacaagaatggataagtgtactcttgaaattagagagaattc |
3326422 |
T |
|
| Q |
383 |
ccaatgatcaagtgcacgagaaactgagaattatctac |
420 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
3326421 |
ccaatgatcaagtgcaagagaaactgagaattagctac |
3326384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 29 - 413
Target Start/End: Complemental strand, 7166459 - 7166075
Alignment:
| Q |
29 |
ttgtacttgatgatgtgaccacatttgaacaattgaaatccttgtgtggagatcctaaattgtttggtccgggaagtgtattaataattacaaccagaga |
128 |
Q |
| |
|
|||| |||||||||||||||||| | ||||| || ||| | || |||||| |||||| ||| ||||||||||||||||| || || ||||||| ||||| |
|
|
| T |
7166459 |
ttgttcttgatgatgtgaccacagtggaacagttaaaagcgttatgtggaaatcctagattatttggtccgggaagtgtctttattgttacaactagaga |
7166360 |
T |
|
| Q |
129 |
tgtacgcgtgcttaatttagttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttaga |
228 |
Q |
| |
|
|| ||| |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| || |
|
|
| T |
7166359 |
tgctcgcctgctcaatttagttaaggttgactatgtctgtacaatgaaggaaatggaagaaaaagacccccttgagcttttcagttggcatgcttttcga |
7166260 |
T |
|
| Q |
229 |
caacctagtcccatacaagactactgtcaactctccaaaaaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttat |
328 |
Q |
| |
|
||||||||||| ||| || ||| | || ||||||| | | |||||||| ||| |||||||||||||| |||||||||||| | ||||||||||||| |
|
|
| T |
7166259 |
caacctagtccgataaaaaacttcagtgaactctcaaggaccgtagttgcctattgtggaggattaccactggctcttgaagtcatcggttcttacttat |
7166160 |
T |
|
| Q |
329 |
atgagaggacaaaacaagaatggataagtgtactcttgaaattagagagaattcccaatgatcaagtgcacgagaaactgagaat |
413 |
Q |
| |
|
| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7166159 |
acgggaggacaaaacaagaatgggaaagtgtactcttgaaattagagagaattcccaatgatcaagtgcaagagaaactgagaat |
7166075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 29 - 413
Target Start/End: Complemental strand, 3288247 - 3287863
Alignment:
| Q |
29 |
ttgtacttgatgatgtgaccacatttgaacaattgaaatccttgtgtggagatcctaaattgtttggtccgggaagtgtattaataattacaaccagaga |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||| || | |||| | ||||| |||| |||||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
3288247 |
ttgtacttgatgatgtgaccacatttgaacagttaaaagccctatgtgcaaatcctgaattctttggtccaggaagtgtattaattattacaactagaga |
3288148 |
T |
|
| Q |
129 |
tgtacgcgtgcttaatttagttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttaga |
228 |
Q |
| |
|
||||| | | ||| ||||| |||||||||||||||| |||| ||||||||||||||| ||||| || ||||||||||||||||| ||||||| ||||||| |
|
|
| T |
3288147 |
tgtacacctacttgatttatttaaggttgactatgtgtgtaaaatgaaggaaatggatgaaaatgagtcccttgagcttttcagctggcatgtttttaga |
3288048 |
T |
|
| Q |
229 |
caacctagtcccatacaagactactgtcaactctccaaaaaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttat |
328 |
Q |
| |
|
||||||| ||| | | |||||| | || || |||| || | |||||| ||||| |||||||||||||| ||||| |||||| |||||||||||| | |
|
|
| T |
3288047 |
caacctaatccaagagaagacttcagtgaattctcaaagagggtagtttcttattgtggaggattaccactagctctagaagtcattggttcttactcaa |
3287948 |
T |
|
| Q |
329 |
atgagaggacaaaacaagaatggataagtgtactcttgaaattagagagaattcccaatgatcaagtgcacgagaaactgagaat |
413 |
Q |
| |
|
|| ||| |||| | |||| |||||||||||| ||| || | ||| |||||||||| ||||| | || || ||||||||||| |
|
|
| T |
3287947 |
atcagatgacagatgaagattggataagtgtattctcaaatccaaagacaattcccaatcatcaaatccaagaaaaactgagaat |
3287863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 100 - 413
Target Start/End: Complemental strand, 3264249 - 3263936
Alignment:
| Q |
100 |
ggaagtgtattaataattacaaccagagatgtacgcgtgcttaatttagttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatccc |
199 |
Q |
| |
|
|||||||| ||||| |||||||||| ||||| ||| | ||||| ||| || | |||||| ||| | |||||||||||||||| |||||| ||| |||| |
|
|
| T |
3264249 |
ggaagtgttttaattgttacaaccagggatgtgcgcatacttaagttacttgaagttgaccgtgtctttacaatgaaggaaatgaacgaaagggagtccc |
3264150 |
T |
|
| Q |
200 |
ttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactactgtcaactctccaaaaaagtagttgcttatcgtggaggattaccagc |
299 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| ||| ||| |||||| | || ||||||| | ||| |||||||||||| | ||||||||||| |
|
|
| T |
3264149 |
ttgagcttttcagttggcatgctttcagacgacctattccaataaaagacttcagtgaactctcaagaaacgtagttgcttattgcagaggattaccact |
3264050 |
T |
|
| Q |
300 |
tgctcttgaagtccttggttcttacttatatgagaggacaaaacaagaatggataagtgtactcttgaaattagagagaattcccaatgatcaagtgcac |
399 |
Q |
| |
|
||||| |||||||| |||||||| || ||||||||||||||| |||||||| |||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3264049 |
ggctctggaagtcctaggttcttagttgtatgagaggacaaaagaagaatgggaaagtatactctcaaaattagagagaattcccaatgatcaagtgcaa |
3263950 |
T |
|
| Q |
400 |
gagaaactgagaat |
413 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
3263949 |
gagaagctgagaat |
3263936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 84 - 413
Target Start/End: Complemental strand, 3409057 - 3408728
Alignment:
| Q |
84 |
taaattgtttggtccgggaagtgtattaataattacaaccagagatgtacgcgtgcttaatttagttaaggttgactatgtatgtacaatgaaggaaatg |
183 |
Q |
| |
|
|||||| |||||| | |||||||| ||||| |||||||||||||||||| | | ||||| || | || ||||||| ||| | || |||| |||||||| |
|
|
| T |
3409057 |
taaattttttggtgctggaagtgtgttaattgttacaaccagagatgtacacatacttaagctactcaatgttgactctgtctataaaatggaggaaatg |
3408958 |
T |
|
| Q |
184 |
gacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactactgtcaactctccaaaaaagtagttgcttatc |
283 |
Q |
| |
|
| |||| || |||||||| || ||| |||||||||||||||| || ||||||| | | || || || ||||||| | ||| || | ||||||| |
|
|
| T |
3408957 |
cagaaaaacgagtcccttgaactattctcttggcatgcttttagaaaagctagtcctagaggaggctttagtgaactctcaagaaatgtggctgcttatt |
3408858 |
T |
|
| Q |
284 |
gtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaacaagaatggataagtgtactcttgaaattagagagaattcc |
383 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| ||||| | || |||||||||||||| |
|
|
| T |
3408857 |
gtggagggttaccactggctcttgaagtccttggatcctacttatttgagaggacaaaacaagaatggataagcgtactatcaaagttagagagaattcc |
3408758 |
T |
|
| Q |
384 |
caatgatcaagtgcacgagaaactgagaat |
413 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
|
|
| T |
3408757 |
caatgatcaagtgcacgagaagctgagaat |
3408728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 91 - 413
Target Start/End: Complemental strand, 3268956 - 3268634
Alignment:
| Q |
91 |
tttggtccgggaagtgtattaataattacaaccagagatgtacgcgtgcttaatttagttaaggttgactatgtatgtacaatgaaggaaatggacgaaa |
190 |
Q |
| |
|
|||||| ||||||||||||| || ||||| | || ||||||||| | ||||| ||| |||| |||||| | | | || || ||||||||||| |||| |
|
|
| T |
3268956 |
tttggtgcgggaagtgtattgattgttacatctagggatgtacgcatacttaagttacttaaagttgaccgtatctataacataaaggaaatggatgaaa |
3268857 |
T |
|
| Q |
191 |
aggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactactgtcaactctccaaaaaagtagttgcttatcgtggagg |
290 |
Q |
| |
|
| | ||||||||||||||| ||||||||||||||||| |||| ||||| | | ||||| | || ||||||| | || | |||||| ||| || |||| |
|
|
| T |
3268856 |
acaagtcccttgagcttttctgttggcatgcttttagagaaccaagtccgaaaggagacttcagtgaactctcaagaagaatagttgtttactgtagagg |
3268757 |
T |
|
| Q |
291 |
attaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaacaagaatggataagtgtactcttgaaattagagagaattcccaatgat |
390 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||| ||| ||||||| ||||||||||||||||||| | | || ||||||||||| ||| ||||| |
|
|
| T |
3268756 |
attaccactggctcttgaagtcattggatcttacttgcgtgacaggacaatacaagaatggataagtgtattatcaaagttagagagaatacccgatgat |
3268657 |
T |
|
| Q |
391 |
caagtgcacgagaaactgagaat |
413 |
Q |
| |
|
||||||| |||||||| ||||| |
|
|
| T |
3268656 |
aaagtgcatgagaaactaagaat |
3268634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 26 - 413
Target Start/End: Original strand, 31174133 - 31174520
Alignment:
| Q |
26 |
tcattgtacttgatgatgtgaccacatttgaacaattgaaatccttgtgtggagatcctaaattgtttggtccgggaagtgtattaataattacaaccag |
125 |
Q |
| |
|
|||| ||||| ||||||||||||||| || ||||| ||| || |||||| ||||||||| ||||| ||| ||||||||||||| || |||||||| || |
|
|
| T |
31174133 |
tcatcgtactcgatgatgtgaccacacccgagcaattaaaagccctgtgtgcagatcctaagttgttcggttcgggaagtgtattgattattacaactag |
31174232 |
T |
|
| Q |
126 |
agatgtacgcgtgcttaatttagttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgctttt |
225 |
Q |
| |
|
||||| |||| | || || | | ||| | ||| || | | ||||||| |||||||||| || | | |||||||| |||||| |||||||||||||| |
|
|
| T |
31174233 |
agatgcacgccttctcaactcacttagtgacgaccatatcttcacaatgacggaaatggacaaataccagtcccttgaacttttctgttggcatgctttt |
31174332 |
T |
|
| Q |
226 |
agacaacctagtcccatacaagactactgtcaactctccaaaaaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttact |
325 |
Q |
| |
|
|||||| | ||| | | ||| | ||| ||||| | |||||||| ||||||||| | |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
31174333 |
caacaaccaaatcctagagaaggtttttgtgaactcactaaaaaagtggttgcttattgcggaggattaccattggctcttgaagtccttggaagttact |
31174432 |
T |
|
| Q |
326 |
tatatgagaggacaaaacaagaatggataagtgtactcttgaaattagagagaattcccaatgatcaagtgcacgagaaactgagaat |
413 |
Q |
| |
|
||| ||||| ||||| |||||||| ||||| ||| | |||||||||| ||||||||| |||||||||| ||||||||||||| |
|
|
| T |
31174433 |
tatcaatgaggaaaaaactagaatggaaaagtgcactatcaaaattagagaaaattcccaacaatcaagtgcaacagaaactgagaat |
31174520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 168 - 384
Target Start/End: Original strand, 13786062 - 13786278
Alignment:
| Q |
168 |
tacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactactgtcaactctccaaa |
267 |
Q |
| |
|
||||||||||||||||| |||| | || ||||||||||| |||||||||||||||||||||||||||| ||| |||||| | || ||||||| | |
|
|
| T |
13786062 |
tacaatgaaggaaatggtcgaaggtaagtctcttgagcttttttgttggcatgcttttagacaacctagtccaatagaagacttcagtgaactctcaagg |
13786161 |
T |
|
| Q |
268 |
aaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaacaagaatggataagtgtactcttga |
367 |
Q |
| |
|
| |||||||||||| |||||||||||||| ||||||||| || |||| ||| ||| || | ||||||||||||||||||| ||||||||| | | |
|
|
| T |
13786162 |
agcgtagttgcttattgtggaggattaccactggctcttgaaatcattgggtctatgttacattacaggacaaaacaagaatggagaagtgtactgtcaa |
13786261 |
T |
|
| Q |
368 |
aattagagagaattccc |
384 |
Q |
| |
|
|||| |||| ||||||| |
|
|
| T |
13786262 |
aatttgagaaaattccc |
13786278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 225
Target Start/End: Complemental strand, 3400409 - 3400216
Alignment:
| Q |
32 |
tacttgatgatgtgaccacatttgaacaattgaaatccttgtgtggagatcctaaattgtttggtccgggaagtgtattaataattacaaccagagatgt |
131 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| ||| | |||||| ||||||||| ||||| ||| ||||||||||||| || |||||||| ||||||| |
|
|
| T |
3400409 |
tacttgatgatgtgaccacatctgagcaattaaaaaacctgtgtgcagatcctaagttgttcggttcgggaagtgtattgattattacaactagagatgg |
3400310 |
T |
|
| Q |
132 |
acgcgtgcttaatttagttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgctttt |
225 |
Q |
| |
|
|||| | || || | | ||| | |||| || | | ||||||| |||||||||||| | | |||||||| |||||| |||||||||||||| |
|
|
| T |
3400309 |
acgccttctcaaatcacttagtggtgaccatatcttcacaatgacagaaatggacgaagaccagtcccttgaacttttctgttggcatgctttt |
3400216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 386
Target Start/End: Complemental strand, 3400176 - 3400055
Alignment:
| Q |
265 |
aaaaaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaacaagaatggataagtgtactct |
364 |
Q |
| |
|
||||| ||||||| |||| | |||||||||||| ||||||||||||||||| |||||||| ||||||||| | |||||||| ||||| ||| | |
|
|
| T |
3400176 |
aaaaatgtagttggttattgcggaggattaccactggctcttgaagtccttggaagttacttatcaaagaggacaacccgagaatggagaagtgcactat |
3400077 |
T |
|
| Q |
365 |
tgaaattagagagaattcccaa |
386 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
3400076 |
caaaattagagaaaattcccaa |
3400055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 345
Target Start/End: Original strand, 13807256 - 13807498
Alignment:
| Q |
103 |
agtgtattaataattacaaccagagatgtacgcgtgcttaatttagttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttg |
202 |
Q |
| |
|
|||||||| || ||||| |||| ||||||||| | ||||| ||| || | |||||| |||| | || |||| ||||||||||||| | || ||||| | |
|
|
| T |
13807256 |
agtgtattgattgttacatccagggatgtacgcatacttaagttacttgaagttgaccatgtctatagcatgacggaaatggacgaatatgagtccctcg |
13807355 |
T |
|
| Q |
203 |
agcttttcagttggcatgcttttagacaacctagtcccatacaagactactgtcaactctccaaaaaagtagttgcttatcgtggaggattaccagctgc |
302 |
Q |
| |
|
||||||||| || |||||||||||| | | ||| | | | |||||| | |||||| || | || || ||| |||| |||||||||||||| || |
|
|
| T |
13807356 |
agcttttcaatttacatgcttttagaaagtcaagtgcaaaagaagacttcaatcaactgtcaagaagcataattgattattgtggaggattaccactagc |
13807455 |
T |
|
| Q |
303 |
tcttgaagtccttggttcttacttatatgagaggacaaaacaa |
345 |
Q |
| |
|
|||||||| |||| |||||||||| ||| |||||||||||| |
|
|
| T |
13807456 |
tcttgaagaaattggatcttacttatttgataggacaaaacaa |
13807498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 347
Target Start/End: Complemental strand, 3393136 - 3393060
Alignment:
| Q |
271 |
gtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaacaaga |
347 |
Q |
| |
|
|||||||| ||| |||| ||| ||||| ||||||||||||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
3393136 |
gtagttgcctattgtggtggaataccactagctcttgaagtccttggatcttacttattgaagaggagaaaacaaga |
3393060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 73 - 413
Target Start/End: Complemental strand, 32412711 - 32412371
Alignment:
| Q |
73 |
tgtggagatcctaaattgtttggtccgggaagtgtattaataattacaaccagagatgtacgcgtgcttaatttagttaaggttgactatgtatgtacaa |
172 |
Q |
| |
|
|||||| ||| ||||| ||||||| |||||||||||||||| |||||||||||||||||| | | ||||| || |||| |||| |||| ||||||| |
|
|
| T |
32412711 |
tgtggaaatcgtaaatggtttggtacgggaagtgtattaattgttacaaccagagatgtacacctacttaaattgcttaaagttgcacatgtttgtacaa |
32412612 |
T |
|
| Q |
173 |
tgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactactgtcaactctccaaaaaagt |
272 |
Q |
| |
|
||||||| ||||| ||| | || |||||||| |||||||||||||||||||||||| |||| ||||| | | || ||| | ||||||| | ||| || |
|
|
| T |
32412611 |
tgaaggagatggatgaagatgagtcccttgaacttttcagttggcatgcttttagagaaccaagtccaacaaaatactttactgaactctctagaaatgt |
32412512 |
T |
|
| Q |
273 |
agttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaacaagaatggataagtgtactcttgaaatta |
372 |
Q |
| |
|
|||||||| |||||||||| ||| |||||||||| ||||||| ||||||||||||| ||||||||| |||||||| ||||||| | | ||| || |
|
|
| T |
32412511 |
tgttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgtattgtcaaaacta |
32412412 |
T |
|
| Q |
373 |
gagagaattcccaatgatcaagtgcacgagaaactgagaat |
413 |
Q |
| |
|
||||||||||| ||||| ||||| || |||||||| ||||| |
|
|
| T |
32412411 |
gagagaattcctaatgaccaagtacaagagaaactaagaat |
32412371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 99 - 405
Target Start/End: Complemental strand, 6907572 - 6907266
Alignment:
| Q |
99 |
gggaagtgtattaataattacaaccagagatgtacgcgtgcttaatttagttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcc |
198 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| || |||||||| | | || | ||||||| ||| |||||| ||| |||||||| ||||| || ||| |
|
|
| T |
6907572 |
gggaagtgtactaattgttacaaccagagatgcacacgtgcttaggtcacttgaagttgactgtgtctgtacagcgaaagaaatggatgaaaatgagtcc |
6907473 |
T |
|
| Q |
199 |
cttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactactgtcaactctccaaaaaagtagttgcttatcgtggaggattaccag |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | | ||| | | | ||| | || | ||||| ||||| |||||| ||| ||||||||||||| |
|
|
| T |
6907472 |
cttgagcttttcagttggcatgcttttagaaacgcaactccaagagcaaacttcagtgatctctcaaaaaatgtagttaattactgtggaggattaccct |
6907373 |
T |
|
| Q |
299 |
ctgctcttgaagtccttggttcttacttatatgagaggacaaaacaagaatggataagtgtactcttgaaattagagagaattcccaatgatcaagtgca |
398 |
Q |
| |
|
||| |||||||||| || |||||||||| ||| ||||||||| ||||||||| |||||| || | || ||||| | ||||||| |||| ||||||| |
|
|
| T |
6907372 |
tggctgttgaagtcctcggatcttacttatttgaaaggacaaaagaagaatggaaaagtgtgctatcaaagttagaaaaaattccccatgaagaagtgca |
6907273 |
T |
|
| Q |
399 |
cgagaaa |
405 |
Q |
| |
|
|||||| |
|
|
| T |
6907272 |
agagaaa |
6907266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 26 - 410
Target Start/End: Complemental strand, 14768713 - 14768329
Alignment:
| Q |
26 |
tcattgtacttgatgatgtgaccacatttgaacaattgaaatccttgtgtggagatcctaaattgtttggtccgggaagtgtattaataattacaaccag |
125 |
Q |
| |
|
||||||||||||||||||||||| | ||| | |||| ||| || ||||||| ||| | || ||||||| | ||||||||| |||| |||||||||| |
|
|
| T |
14768713 |
tcattgtacttgatgatgtgacctcgtttcaggaattaaaagccctgtgtggcaatcgtgcatggtttggtactggaagtgtaataattgttacaaccag |
14768614 |
T |
|
| Q |
126 |
agatgtacgcgtgcttaatttagttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgctttt |
225 |
Q |
| |
|
|||||||| | | ||||||||| || | |||||| || | |||| || |||||||| || || | || |||||||||||||||||||||||| | ||| |
|
|
| T |
14768613 |
agatgtacaccttcttaatttacttgaagttgaccatctctgtaaaaccgaggaaatgaacaaagacgactcccttgagcttttcagttggcatacattt |
14768514 |
T |
|
| Q |
226 |
agacaacctagtcccatacaagactactgtcaactctccaaaaaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttact |
325 |
Q |
| |
|
|| || | | || | |||| | ||||||||| ||||| |||||||||||| |||||||||| ||| |||||||||||| |||| ||||||| |
|
|
| T |
14768513 |
cgagaagcatgccctgcaaaagattttaatcaactctcaaaaaaggtagttgcttattgtggaggattgccattggctcttgaagtcattggatcttact |
14768414 |
T |
|
| Q |
326 |
tatatgagaggacaaaacaagaatggataagtgtactcttgaaattagagagaattcccaatgatcaagtgcacgagaaactgag |
410 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||||||||| | |||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14768413 |
tatatgggaggacaaaaccagaatgggaaagtgtactgtcaaaattaaagagaattcccaatgatcaagtgcatcagaaactgag |
14768329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 169 - 358
Target Start/End: Complemental strand, 8373382 - 8373193
Alignment:
| Q |
169 |
acaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactactgtcaactctccaaaa |
268 |
Q |
| |
|
||||||| |||||||| |||| || |||||||| |||||||| |||||||||||| ||||| | |||| | | |||| | | || ||||||| | || |
|
|
| T |
8373382 |
acaatgattgaaatggataaaaacgagtcccttgaacttttcagctggcatgcttttcgacaatcatgtcctagaaaagatttcggtaaactctctagaa |
8373283 |
T |
|
| Q |
269 |
aagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaacaagaatggataagtg |
358 |
Q |
| |
|
| || ||| ||||| | |||||||||| ||||||||||||||||| |||||||||| | |||||||| |||||||||||| ||||| |
|
|
| T |
8373282 |
atgtggtttcttattgcaaaggattaccactagctcttgaagtccttggatcttacttatctaagaggacagaacaagaatggagaagtg |
8373193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 8373517 - 8373419
Alignment:
| Q |
31 |
gtacttgatgatgtgaccacatttgaacaattgaaatccttgtgtggagatcctaaattgtttggtccgggaagtgtattaataattacaaccagagat |
129 |
Q |
| |
|
||||||||||||||||||| | ||| ||||| ||| | || ||||| ||||||| ||||||||| | ||||||||||| || |||||||| |||||| |
|
|
| T |
8373517 |
gtacttgatgatgtgaccaagtctgagcaattaaaagctctgggtggaaatcctaagttgtttggttcaggaagtgtattgattattacaactagagat |
8373419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 18929209 - 18929281
Alignment:
| Q |
149 |
ttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgc |
221 |
Q |
| |
|
|||| ||| ||||||| | || |||||| ||||||||||| || ||||| ||||||||||| ||||||||||| |
|
|
| T |
18929209 |
ttaaagttcactatgtgtatagaatgaaagaaatggacgacaatgaatctcttgagctttttagttggcatgc |
18929281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 34727517 - 34727445
Alignment:
| Q |
149 |
ttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgc |
221 |
Q |
| |
|
|||| ||||||||||| | || |||||| |||||||| | || ||||| ||||||||||| ||||||||||| |
|
|
| T |
34727517 |
ttaaagttgactatgtgtatagaatgaaagaaatggatggcaatgaatctcttgagctttttagttggcatgc |
34727445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 308 - 398
Target Start/End: Complemental strand, 31060365 - 31060275
Alignment:
| Q |
308 |
aagtccttggttcttacttatatgagaggacaaaacaagaatggataagtgtactcttgaaattagagagaattcccaatgatcaagtgca |
398 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||| || |||| ||| ||||||||||||| ||||||||| | ||||||||| |
|
|
| T |
31060365 |
aagtccttggttgttacttatctgagaggacaaaacaagaccagaggagtgcactattgaaattagagaaaattcccaaagttcaagtgca |
31060275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 7899 - 7851
Alignment:
| Q |
178 |
gaaatggacgaaaaggaatcccttgagcttttcagttggcatgctttta |
226 |
Q |
| |
|
|||||||||||| | || ||||||||||||||||||||||||||||||| |
|
|
| T |
7899 |
gaaatggacgaagatgagtcccttgagcttttcagttggcatgctttta |
7851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 413
Target Start/End: Complemental strand, 7776 - 7664
Alignment:
| Q |
301 |
gctcttgaagtccttggttcttacttatatgagaggacaaaacaagaatggataagtgtactcttgaaattagagagaattcccaatgatcaagtgcacg |
400 |
Q |
| |
|
||||||||| | || || ||| |||||| ||| |||||||| ||||||||| |||||| || | |||||||| | ||||||| |||| ||||||| | |
|
|
| T |
7776 |
gctcttgaaattctcggatctcacttatttgaaaggacaaaggaagaatggaaaagtgtgctatcaaaattagaaaaaattccccatgaagaagtgcaag |
7677 |
T |
|
| Q |
401 |
agaaactgagaat |
413 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7676 |
agaaactgagaat |
7664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 386
Target Start/End: Original strand, 20810394 - 20810749
Alignment:
| Q |
31 |
gtacttgatgatgtgaccacatttgaacaattgaaatccttgtgtggagatcctaaattgtttggtccgggaagtgtattaataattacaaccagagatg |
130 |
Q |
| |
|
||||| ||||||||||||| | ||| ||||| ||| | |||||| | ||||||| ||||| ||| |||| |||||||| || ||||| || |||||| |
|
|
| T |
20810394 |
gtactcgatgatgtgaccaagtctgagcaattaaaagctctgtgtgaaaatcctaagttgttaggttcggggagtgtattgattattaccactagagatt |
20810493 |
T |
|
| Q |
131 |
tacgcgtgcttaatttagttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagaca |
230 |
Q |
| |
|
||||| | || || | | |||| |||||| |||| | || |||| ||||||||| || | |||||||||| ||||||||||| ||||||||| ||| |
|
|
| T |
20810494 |
tacgccttctcaagtcatttaaagttgaccatgtctacaccatgactgaaatggacaaacaccaatcccttgaacttttcagttgtcatgcttttcaaca |
20810593 |
T |
|
| Q |
231 |
acctagtcccatacaagactactgtcaactctccaaaaaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatat |
330 |
Q |
| |
|
||| | || | | | | | | ||||||| | ||| |||||||||||| | ||||||||| ||||||||||||||||| |||||||| | |
|
|
| T |
20810594 |
accaaaccctagagacaaatttagcgaactctctagaaatgtagttgcttattgcaaaggattacccctggctcttgaagtccttggacgttacttatct |
20810693 |
T |
|
| Q |
331 |
gagaggacaaaacaagaatggataagtgtactcttgaaattagagagaattcccaa |
386 |
Q |
| |
|
|||||||| |||||||||||| | ||| ||| | |||||||||| ||||||||| |
|
|
| T |
20810694 |
gagaggacggaacaagaatggagatgtgcactatcaaaattagagaaaattcccaa |
20810749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 225
Target Start/End: Original strand, 20836749 - 20836943
Alignment:
| Q |
31 |
gtacttgatgatgtgaccacatttgaacaattgaaatccttgtgtggagatcctaaattgtttggtccgggaagtgtattaataattacaaccagagatg |
130 |
Q |
| |
|
||||| ||||||||||||| | ||| ||||| ||| | |||||| | ||||||| ||||| ||| |||| |||||||| || ||||| || |||||| |
|
|
| T |
20836749 |
gtactcgatgatgtgaccaagtctgagcaattaaaagcactgtgtgcaaatcctaagttgttaggttcggggagtgtattgattattaccactagagatt |
20836848 |
T |
|
| Q |
131 |
tacgcgtgcttaatttagttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgctttt |
225 |
Q |
| |
|
||||| | || || | | |||| |||||| |||| | || |||| ||||||||| || | |||||||||| ||||||||||| ||||||||| |
|
|
| T |
20836849 |
tacgccttctcaagtcatttaaagttgaccatgtctacaccatgactgaaatggacaaacaccaatcccttgaacttttcagttgtcatgctttt |
20836943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 6834397 - 6834440
Alignment:
| Q |
178 |
gaaatggacgaaaaggaatcccttgagcttttcagttggcatgc |
221 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
6834397 |
gaaatggacgaaagtgaatctcttgagcttttcagttggcatgc |
6834440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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