View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2085_1D_low_9 (Length: 401)
Name: NF2085_1D_low_9
Description: NF2085_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_1D_low_9 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 23 - 401
Target Start/End: Complemental strand, 35072156 - 35071763
Alignment:
| Q |
23 |
attggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttca |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35072156 |
attggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttca |
35072057 |
T |
|
| Q |
123 |
gataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagttttactcttcca |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35072056 |
gataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagttttactcttcca |
35071957 |
T |
|
| Q |
223 |
gctaactgtaaattggatcaggttatggcttctattgaagatggtgttcttactgttactgtccctaaggaagaggttaccaaccctgatcgtttgacca |
322 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35071956 |
gctaactgtaaattggatcaggttaaggcttctattgaagatggtgttcttactgttactgtccctaaggaagaggttaccaaccctgatcgtttgacca |
35071857 |
T |
|
| Q |
323 |
atcagagttcacagtgagagtaattatgaaaag---------------ttgaaatttgaatccaaaaatgttccactttggctatttgtttttg |
401 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35071856 |
atcagagttcacagtgagagtaataatgaacagttctgttcgtgtggattgaaatttgaatccaaaaatgttccattttggctatttgtttttg |
35071763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 35072996 - 35072805
Alignment:
| Q |
23 |
attggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttca |
122 |
Q |
| |
|
|||||||||| || |||||||| ||||| ||||| |||||| | || || ||||| || ||||||||||| ||||| ||||||||| || || ||||| |
|
|
| T |
35072996 |
attggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttca |
35072897 |
T |
|
| Q |
123 |
gataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
214 |
Q |
| |
|
||||| || ||||||| ||| || | | |||||| |||||| ||| || ||||| |||||||| ||||| |||||||||||||| |||| |
|
|
| T |
35072896 |
gataagcggtgagaggaacattgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggttta |
35072805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 35106864 - 35107055
Alignment:
| Q |
23 |
attggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttca |
122 |
Q |
| |
|
|||||||||| || |||||||| ||||| ||||| |||||| | || || ||||| || ||||||||||| ||||| ||||||||| || || ||||| |
|
|
| T |
35106864 |
attggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttca |
35106963 |
T |
|
| Q |
123 |
gataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
214 |
Q |
| |
|
||||| || ||||||| | | || | | |||||| |||||| ||| || ||||| |||||||| ||||| |||||||||||||| |||| |
|
|
| T |
35106964 |
gataagcggtgagaggaactttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggttta |
35107055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 24041052 - 24040861
Alignment:
| Q |
23 |
attggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttca |
122 |
Q |
| |
|
|||||||||| || |||||||| ||||| ||||| |||||| | || || ||||| || || |||||||| ||||| ||||||||| || || ||||| |
|
|
| T |
24041052 |
attggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgatagggttcttca |
24040953 |
T |
|
| Q |
123 |
gataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
214 |
Q |
| |
|
||||| || ||||||| | | || | | |||||| |||||| ||| || ||||| |||||||| ||||| |||||||||||||| |||| |
|
|
| T |
24040952 |
gataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggttta |
24040861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 24014495 - 24014379
Alignment:
| Q |
23 |
attggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttca |
122 |
Q |
| |
|
|||||||||| || |||||||| ||||| ||||| |||||| | || || ||||| || ||||||||||| ||||| |||||| || || || ||||| |
|
|
| T |
24014495 |
attggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaaggtgatagggttcttca |
24014396 |
T |
|
| Q |
123 |
gataacaggagagagga |
139 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
24014395 |
gataagcggagagagga |
24014379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 3123082 - 3123163
Alignment:
| Q |
28 |
aaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatg |
109 |
Q |
| |
|
|||||||||| |||||| ||||| |||||||||||| | |||||| |||| || || || ||||| ||||| ||||||||| |
|
|
| T |
3123082 |
aaggaaactctagaagcacatgtgttcaaagctgatcttccagggttgaagaaggaagaggtgaaggttgaaattgaagatg |
3123163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University