View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2085_2D_low_14 (Length: 295)

Name: NF2085_2D_low_14
Description: NF2085_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2085_2D_low_14
NF2085_2D_low_14
[»] scaffold0667 (1 HSPs)
scaffold0667 (63-280)||(4229-4443)
[»] chr2 (24 HSPs)
chr2 (14-231)||(9320710-9320926)
chr2 (50-280)||(9291685-9291915)
chr2 (51-250)||(12012731-12012927)
chr2 (14-231)||(9328329-9328543)
chr2 (51-237)||(11987679-11987865)
chr2 (78-280)||(8573675-8573877)
chr2 (64-280)||(9274277-9274493)
chr2 (50-233)||(9284386-9284570)
chr2 (51-250)||(12006297-12006496)
chr2 (63-233)||(9315795-9315965)
chr2 (51-255)||(12019062-12019266)
chr2 (78-280)||(10347552-10347757)
chr2 (101-280)||(9065763-9065942)
chr2 (80-233)||(10335649-10335802)
chr2 (78-250)||(10371625-10371800)
chr2 (57-223)||(10352879-10353045)
chr2 (63-230)||(9061358-9061522)
chr2 (58-165)||(7115933-7116040)
chr2 (174-280)||(16268955-16269061)
chr2 (78-228)||(10341140-10341293)
chr2 (50-149)||(9294920-9295020)
chr2 (111-233)||(8579701-8579823)
chr2 (174-230)||(7115844-7115900)
chr2 (101-161)||(9364442-9364502)
[»] chr3 (1 HSPs)
chr3 (66-280)||(37462244-37462461)
[»] chr8 (1 HSPs)
chr8 (109-226)||(41966911-41967028)
[»] chr1 (4 HSPs)
chr1 (123-231)||(29453502-29453610)
chr1 (123-231)||(29423101-29423209)
chr1 (123-231)||(29467978-29468086)
chr1 (174-231)||(29443519-29443576)
[»] chr7 (2 HSPs)
chr7 (174-230)||(45230295-45230351)
chr7 (174-241)||(45243557-45243624)


Alignment Details
Target: scaffold0667 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 63 - 280
Target Start/End: Original strand, 4229 - 4443
Alignment:
Q  63 aagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctc 162  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4229 aagtaccttttcttgctcttgcatgtatgattctccttcttactagaattatcaacaggaaaggaaggtggtacaagacttccaacacaaatcttagctc 4328  T
Q  163 catcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaatacctcaattcc 262  Q
    ||| |||||| |||||| |||   ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  4329 cattgaaatcaggaatttctt---cataactaacttgttcagtcttcaaatcataccaaaacagcttcttatgatgcacctccaacaaaacctcaattcc 4425  T
Q  263 ttctaacagaaccttact 280  Q
    ||| | ||||||||||||    
T  4426 ttcaatcagaaccttact 4443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 9e-70; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 9320710 - 9320926
Alignment:
Q  14 catcaactaatacatagcaaaaactcaataaactaggataatgaataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaatta 113  Q
    |||||||||||||||||||||||||||| ||||||| ||||| || || ||||||||| || |||||||||||||| |||||||||||||| ||||||||    
T  9320710 catcaactaatacatagcaaaaactcaaaaaactagtataatcaa-aacaagtaccttctcatgctcttgcttgtacgattctccttcttcttagaatta 9320808  T
Q  114 tcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaat 213  Q
    |||||||| ||||||||||| |||||||||||||||| || | || |||||| |||||| ||||||||||||||||||||||||||| || | |||||||    
T  9320809 tcaacagggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaat 9320908  T
Q  214 cataccaaaacagcttct 231  Q
    ||||||||||||||||||    
T  9320909 cataccaaaacagcttct 9320926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 50 - 280
Target Start/End: Original strand, 9291685 - 9291915
Alignment:
Q  50 gataatgaataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaaca 149  Q
    |||||| ||||| ||||||| |||||| |||||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |||||    
T  9291685 gataatcaataagaagtaccgtttctttctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaaca 9291784  T
Q  150 ctaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaaca 249  Q
    | |||| ||||| |||| ||||  |||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||| |||||||||||    
T  9291785 caaatcatagcttcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttcctatgatttacctccaaca 9291884  T
Q  250 atacctcaattccttctaacagaaccttact 280  Q
    | |||| | |||| || ||||||||||||||    
T  9291885 aaacctgagttccgtccaacagaaccttact 9291915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 51 - 250
Target Start/End: Complemental strand, 12012927 - 12012731
Alignment:
Q  51 ataatgaataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacac 150  Q
    ||||| ||||| ||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  12012927 ataatcaataagaagtaccttctcttgctcttgcttgaatgattccccttcttcctagaattatcaacagggaaggagggtggtacaagacttccaacac 12012828  T
Q  151 taatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaa 250  Q
     |||| ||||| |||||||||  ||||||||||||||||||||||||||   | | |||||||||||||||| |||||||||||||| ||||||||||||    
T  12012827 aaatcatagcttcatcgaaattaggaattccttcaacataactaacttg---actcttcaaatcataccaaaccagcttcttatgatttacctccaacaa 12012731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 9328329 - 9328543
Alignment:
Q  14 catcaactaatacatagcaaaaactcaataaactaggataatgaataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaatta 113  Q
    |||||||| ||||||||||||||||||| |||||   ||||| || || ||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  9328329 catcaacttatacatagcaaaaactcaaaaaactc--ataatcaa-aagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaatta 9328425  T
Q  114 tcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaat 213  Q
    |||||||| |||||||||||||||||||||||||||  || | || |  ||| |||||| ||||||||||||||||||||||||||| || |  | ||||    
T  9328426 tcaacagggaaggaaggtggtacaagacttccaacagaaaacataacatcatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaat 9328525  T
Q  214 cataccaaaacagcttct 231  Q
    ||||| ||||||||||||    
T  9328526 catacaaaaacagcttct 9328543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 51 - 237
Target Start/End: Complemental strand, 11987865 - 11987679
Alignment:
Q  51 ataatgaataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacac 150  Q
    ||||| ||||| ||||||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  11987865 ataatcaataagaagtaccttctcttggtcttgcttgaatgattccccttcttcctagaattatcaacagggaaggagggtggtacaagacttccaacac 11987766  T
Q  151 taatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgat 237  Q
     |||| ||||| ||||||| |  |||||||| ||||||||||||| ||||||| | |||||||||||||||| ||||||||| ||||    
T  11987765 aaatcatagcttcatcgaatttaggaattccgtcaacataactaaattgttcactcttcaaatcataccaaaccagcttcttgtgat 11987679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 78 - 280
Target Start/End: Complemental strand, 8573877 - 8573675
Alignment:
Q  78 ctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaa 177  Q
    ||||||||||||  |||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||||| || | ||||| |||   |||  ||||    
T  8573877 ctcttgcttgtacaattctcctccttcctacaattatcaacagggaagaaaggtggtacaagacttccaacacaaaacatagctgcattccaattaggaa 8573778  T
Q  178 ttccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaatacctcaattccttctaacagaacctt 277  Q
    |||||||||||||||| ||||||||| | |||||||||||||||||||||||| |||||  ||||||| |||| || ||||||||||| |||||||||||    
T  8573777 ttccttcaacataactgacttgttcactcttcaaatcataccaaaacagcttcctatgacatacctccgacaaaacttcaattccttccaacagaacctt 8573678  T
Q  278 act 280  Q
    |||    
T  8573677 act 8573675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 64 - 280
Target Start/End: Original strand, 9274277 - 9274493
Alignment:
Q  64 agtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctcc 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| | |||  ||| |||    
T  9274277 agtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacagggaaggagggtggtacaaaacttccaacccaaataatagttcc 9274376  T
Q  164 atcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaatacctcaattcct 263  Q
    || ||| |  |||||||||| |||| |||||||||||||| | |||||||||||||||| ||| ||| ||| || | |||||    | || | |||||||    
T  9274377 attgaagttaggaattcctttaacaaaactaacttgttcactcttcaaatcataccaaatcaggttcctattatttccctccgttgaaacatgaattcct 9274476  T
Q  264 tctaacagaaccttact 280  Q
    || ||||||||||||||    
T  9274477 tccaacagaaccttact 9274493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 50 - 233
Target Start/End: Complemental strand, 9284570 - 9284386
Alignment:
Q  50 gataatgaataaa-aagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaac 148  Q
    |||||| |||||| ||||||||| ||||||||||||||  | ||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||    
T  9284570 gataatcaataaagaagtaccttctcttgctcttgcttaaacgattctccttcttactagaattatcaacagggaaggaaggtggcacaagactttcaac 9284471  T
Q  149 actaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttctta 233  Q
    || |||| ||||| |||| ||||  |||||||||||||||||| ||||||| ||| | |||||||||||||||| ||||||||||    
T  9284470 acaaatcatagcttcatccaaattaggaattccttcaacataaataacttgctcactcttcaaatcataccaaaccagcttctta 9284386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 51 - 250
Target Start/End: Complemental strand, 12006496 - 12006297
Alignment:
Q  51 ataatgaataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacac 150  Q
    ||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||| || |||| |||||||| ||||||||  ||||||||||||||||||    
T  12006496 ataatcaataagaagtaccttctcttgctcttgcttgtacgattctccttcttcgtacaattctcaacagggaaggaaggcagtacaagacttccaacac 12006397  T
Q  151 taatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaa 250  Q
     |||| | ||| |||||||||  |||||||| ||||  ||| |||||| |||| | |||||||||||||||| |||||||||||||| |||||| |||||    
T  12006396 aaatcatcgcttcatcgaaatttggaattccctcaatgtaattaacttcttcactcttcaaatcataccaaaccagcttcttatgatttacctcaaacaa 12006297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 63 - 233
Target Start/End: Original strand, 9315795 - 9315965
Alignment:
Q  63 aagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctc 162  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||| |||| |||||     
T  9315795 aagtaccttctcttgttcttgcttgtatgattctccttcttcctacaataatcaacagggaaggaaggtggtacaagactttcaacacaaatcatagctt 9315894  T
Q  163 catcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttctta 233  Q
    |||| ||||  | |||||||||||||||| ||||||||||| |  |||| ||| |||||||||||||||||    
T  9315895 catccaaattagaaattccttcaacataaataacttgttcactcatcaagtcacaccaaaacagcttctta 9315965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 51 - 255
Target Start/End: Complemental strand, 12019266 - 12019062
Alignment:
Q  51 ataatgaataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacac 150  Q
    ||||| ||||| ||||||||| |||||||||| |||||| ||||||||||| |   |  || |||| |||| ||||||||||||||||||||||||||||    
T  12019266 ataatcaataagaagtaccttctcttgctctttcttgtacgattctccttcgtatgattatcatcagcaggtaaggaaggtggtacaagacttccaacac 12019167  T
Q  151 taatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaa 250  Q
     |||| | ||| |||||||||  |||||||||||||||||||||||||| | | | |||||||||||||||| |||| | ||||||| ||| ||||||||    
T  12019166 aaatcatggcttcatcgaaattaggaattccttcaacataactaacttgctgactcttcaaatcataccaaaccagcatattatgatttacatccaacaa 12019067  T
Q  251 tacct 255  Q
     ||||    
T  12019066 aacct 12019062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 78 - 280
Target Start/End: Original strand, 10347552 - 10347757
Alignment:
Q  78 ctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcggga- 176  Q
    |||||||||| |||||||||||||||||||  |||||||||||| ||||||||||| |||||||||||||||| || | ||| | |||  | ||  |||     
T  10347552 ctcttgcttggatgattctccttcttcctacgattatcaacagggaaggaaggtgggacaagacttccaacacaaaacatagtttcattcatattaggag 10347651  T
Q  177 --attccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaatacctcaattccttctaacagaac 274  Q
      ||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||| |||||||||||||| || | |  || ||| ||||||||    
T  10347652 gaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttcctatgttgtacctccaacaaaacatgagctctttccaacagaac 10347751  T
Q  275 cttact 280  Q
    ||||||    
T  10347752 cttact 10347757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 101 - 280
Target Start/End: Complemental strand, 9065942 - 9065763
Alignment:
Q  101 cttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgt 200  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||| |||||| ||||  ||   |||   |||  |||| ||||||||||||| ||||||||    
T  9065942 cttcctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttgt 9065843  T
Q  201 tcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaatacctcaattccttctaacagaaccttact 280  Q
    ||| | ||||||||||||||||| ||||||| ||||| |||||||||||| ||||||||| |||| ||||||||||||||    
T  9065842 tcactcttcaaatcataccaaaagagcttctgatgatctacctccaacaaaacctcaattgcttccaacagaaccttact 9065763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 10335649 - 10335802
Alignment:
Q  80 cttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaatt 179  Q
    |||||||||| |||||| ||||||||||  |||||||||||| ||||||||||  |||||||||||||||| |||| |||   |||| ||||  ||||||    
T  10335649 cttgcttgtacgattctgcttcttcctacgattatcaacaggtaaggaaggtgaaacaagacttccaacacaaatcatagtgtcatccaaattaggaatt 10335748  T
Q  180 ccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttctta 233  Q
    |||||||||||||||| ||||||| | ||||||||||||||||||| |||||||    
T  10335749 ccttcaacataactaatttgttcactcttcaaatcataccaaaacaacttctta 10335802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 78 - 250
Target Start/End: Original strand, 10371625 - 10371800
Alignment:
Q  78 ctcttgcttgtatgattctccttcttcctagaattatcaaca-ggaaaggaag--gtggtacaagacttccaacactaatcttagctccatcgaaatcgg 174  Q
    ||||||||||||||||||||||||||||||  |||||||||| || ||||  |  ||||||||||||| ||||||| || | ||||  |||| ||||  |    
T  10371625 ctcttgcttgtatgattctccttcttcctaccattatcaacaaggtaagggggtggtggtacaagactaccaacacaaaccatagcatcatccaaattag 10371724  T
Q  175 gaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaa 250  Q
     | |||||||||||||||||||||||||| | ||||||||||||||||||||||||  ||| ||||||||||||||    
T  10371725 aatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttccaatgttgtacctccaacaa 10371800  T

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Target: chr2; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 57 - 223
Target Start/End: Original strand, 10352879 - 10353045
Alignment:
Q  57 aataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatct 156  Q
    ||||| ||||||||||||| ||||| ||||||| ||||||||| |||||||  |||||||||||| ||| |||||||||||||||||||||||| ||||     
T  10352879 aataagaagtaccttttctcgctctcgcttgtaggattctcctgcttcctacgattatcaacagggaagtaaggtggtacaagacttccaacacaaatca 10352978  T
Q  157 tagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaa 223  Q
    |||   |||| ||||   ||||| ||| ||||||||||||||||| | | | |||||||||||||||    
T  10352979 tagtgtcatccaaattaagaatttcttgaacataactaacttgtttactctccaaatcataccaaaa 10353045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 63 - 230
Target Start/End: Complemental strand, 9061522 - 9061358
Alignment:
Q  63 aagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctc 162  Q
    ||||||||| ||||| ||||||||||| ||||||||||||| | ||   |||||||||| ||| |||||| ||| ||||||||||||  || | |||||     
T  9061522 aagtaccttctcttggtcttgcttgtacgattctccttcttacaag---tatcaacagggaagaaaggtgatacgagacttccaacataaaacatagctt 9061426  T
Q  163 catcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttc 230  Q
    |||| ||||  |||||||||||||||||||||||||||||| | || | |||||||||||||||||||    
T  9061425 catcaaaattaggaattccttcaacataactaacttgttcactcttgagatcataccaaaacagcttc 9061358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 7116040 - 7115933
Alignment:
Q  58 ataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatctt 157  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||| ||| || ||||      
T  7116040 ataagaagtaccttctcttgctcttgcttgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtacaaggctttcaaaacaaatcaa 7115941  T
Q  158 agctccat 165  Q
    ||||||||    
T  7115940 agctccat 7115933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 174 - 280
Target Start/End: Original strand, 16268955 - 16269061
Alignment:
Q  174 ggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaatacctcaattccttctaacagaa 273  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||||||||| |||||||| ||| || |||||||| |||||||||||||| || ||||    
T  16268955 ggaattccttcaacataactaactcgttcactcttcaaatcataccaaaacaacttcttataatgcacgtccaacaaaacctcaattccttcaaagagaa 16269054  T
Q  274 ccttact 280  Q
    |||||||    
T  16269055 ccttact 16269061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 78 - 228
Target Start/End: Original strand, 10341140 - 10341293
Alignment:
Q  78 ctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaa 177  Q
    |||||||||| | |||||||||||||||||  ||| |||||||| ||| |||||||||| | |||||||||||  ||| ||||  |||| ||||| ||||    
T  10341140 ctcttgcttgaaggattctccttcttcctacgattgtcaacagggaagaaaggtggtactatacttccaacacacatcatagcatcatccaaatcaggaa 10341239  T
Q  178 ttccttcaac---ataactaacttgttcagtattcaaatcataccaaaacagct 228  Q
    ||||||||||   |||||||||||||||| | | ||||||||||||||||||||    
T  10341240 ttccttcaacataataactaacttgttcactctccaaatcataccaaaacagct 10341293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 9295020 - 9294920
Alignment:
Q  50 gataatgaataaa-aagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaac 148  Q
    |||||| |||||| ||||||||| ||||||||||||||  | ||||||||||||| ||||||||||||||||| |||||||||| ||| |||||| ||||    
T  9295020 gataatcaataaagaagtaccttctcttgctcttgcttaaacgattctccttcttactagaattatcaacagggaaggaaggtgctacgagactttcaac 9294921  T
Q  149 a 149  Q
    |    
T  9294920 a 9294920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 233
Target Start/End: Complemental strand, 8579823 - 8579701
Alignment:
Q  111 ttatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattca 210  Q
    ||||||| ||| ||||||||||||| |||  ||||||||  |||| ||| | ||| |||||  |||||||||| |||| || |||||| |||| | || |    
T  8579823 ttatcaataggcaaggaaggtggtagaagggttccaacataaatcatagtttcattgaaattaggaattccttgaacacaagtaacttcttcacttttga 8579724  T
Q  211 aatcataccaaaacagcttctta 233  Q
     ||||||||||||||||||||||    
T  8579723 gatcataccaaaacagcttctta 8579701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 7115900 - 7115844
Alignment:
Q  174 ggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttc 230  Q
    ||||||||||||||| |||||||||||||  | |||||||||||||||| |||||||    
T  7115900 ggaattccttcaacacaactaacttgttcgctcttcaaatcataccaaaccagcttc 7115844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 9364442 - 9364502
Alignment:
Q  101 cttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagct 161  Q
    ||||||| ||||||||||||| || ||||||||||||||||| ||||||| |||| |||||    
T  9364442 cttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagct 9364502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 66 - 280
Target Start/End: Original strand, 37462244 - 37462461
Alignment:
Q  66 taccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagc---tc 162  Q
    |||||| ||||||||||||||||    | ||||||||||||| ||||||||||||| || | ||||| |||||||||| |||||| |||| ||||   ||    
T  37462244 taccttctcttgctcttgcttgtcctgtcctccttcttcctacaattatcaacagggaaaggaggtgatacaagactttcaacacaaatcatagcagctc 37462343  T
Q  163 catcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaatacctcaattcc 262  Q
    |||  ||||  |||| |||||||| |||||||||||||||| | ||| |||||||||||||||||||  | |||| ||||| |||||| |||| ||| ||    
T  37462344 cattcaaattaggaactccttcaatataactaacttgttcactcttccaatcataccaaaacagctttctgtgatctaccttcaacaaaacctgaatgcc 37462443  T
Q  263 ttctaacagaaccttact 280  Q
    ||| |||| |||||||||    
T  37462444 ttccaacaaaaccttact 37462461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 41967028 - 41966911
Alignment:
Q  109 aattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtatt 208  Q
    ||||| ||||||| |||||||||||||||||||||||||||| || | | ||| |||| ||||  |||||||||||||||||| ||| ||||||| | ||    
T  41967028 aattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttcaacataagtaatttgttcactctt 41966929  T
Q  209 caaatcataccaaaacag 226  Q
    ||||||||||||||||||    
T  41966928 caaatcataccaaaacag 41966911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 29453610 - 29453502
Alignment:
Q  123 aaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaa 222  Q
    ||||||||||| |||||||||||||||| |||| |||||  ||||||||  ||||||||||||||| |||||||||||||| | || | |||||||||||    
T  29453610 aaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagatcataccaaa 29453511  T
Q  223 acagcttct 231  Q
    |||||||||    
T  29453510 acagcttct 29453502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 29423101 - 29423209
Alignment:
Q  123 aaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaa 222  Q
    |||||||||| ||||||||||||||||| |||| | |||  ||||||||  |||||||||| |||| |||||||||||||| | || | |||||||||||    
T  29423101 aaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaa 29423200  T
Q  223 acagcttct 231  Q
    |||||||||    
T  29423201 acagcttct 29423209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 29468086 - 29467978
Alignment:
Q  123 aaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaa 222  Q
    |||||||||||||||||||||||||||| |||| ||||| |||  ||||  |||||||||||||||||| |||| |||||| | || | |||||||||||    
T  29468086 aaggaaggtggtacaagacttccaacacaaatcatagcttcattcaaattaggaattccttcaacataattaacatgttcactcttgagatcataccaaa 29467987  T
Q  223 acagcttct 231  Q
    ||| |||||    
T  29467986 acaacttct 29467978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 29443576 - 29443519
Alignment:
Q  174 ggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttct 231  Q
    |||||||||||||||||||||||   |||| | || | ||||||||||||||||||||    
T  29443576 ggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttct 29443519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 45230295 - 45230351
Alignment:
Q  174 ggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttc 230  Q
    |||||||||| ||||| | ||||||||||| | || |||||||||||||||||||||    
T  45230295 ggaattccttgaacatgagtaacttgttcactcttgaaatcataccaaaacagcttc 45230351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 45243557 - 45243624
Alignment:
Q  174 ggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtac 241  Q
    |||||||||| ||||||| ||| ||||||| | || | ||||||||||||||||||| || |||||||    
T  45243557 ggaattccttgaacataagtaagttgttcactgttgagatcataccaaaacagcttcctaggatgtac 45243624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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