View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2085_2D_low_17 (Length: 292)
Name: NF2085_2D_low_17
Description: NF2085_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_2D_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 15430412 - 15430691
Alignment:
| Q |
1 |
ccaattttgttgattgggtgtttgtataaagtgttagctaaggtgttagccaatagacttaaaaaggttataggtagcgtcatttatgaatcatggtcgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15430412 |
ccaattttgttgattgggtgtttgtataaagtgttagctaaggtgttagccaatagacttagaaaggttataggtagcgtcatttatgaatcatggtcgg |
15430511 |
T |
|
| Q |
101 |
cttttgttaaaggaagagagattctggtggattgaaaatatttggaagcagttgtgagaaaaatgaatttccatacggcgtaagtgggtcatggaaggtg |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || ||| |
|
|
| T |
15430512 |
cttttgttaaaggaagacagattctggtggattgaaaatatttggaagcagttgtgagaaaaatgaatatccagacggcgtaagtgggtcatgaaatgtg |
15430611 |
T |
|
| Q |
201 |
taattacgtcaacatcagtcctcgttaatgaggagccaacttatgaatttaatttggaaagagggctacaacaaagtgat |
280 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15430612 |
taattacgacaacatcagtcctcgttaatgaggagccaactgatgaatttaatttggaaagagggctacaacaaattgat |
15430691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University