View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085_2D_low_18 (Length: 289)
Name: NF2085_2D_low_18
Description: NF2085_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_2D_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 38881880 - 38881601
Alignment:
| Q |
1 |
acttccttctaatgcggtgttcagttagcctagtaaaccgactcaaagtaatatataccatatgcgtgatatcatggctggtatgatagaatctgggtga |
100 |
Q |
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||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38881880 |
acttccttctaatgcggtgttcagttaaccaagtgaaccgactcaaagtaatatataccatatgcgtcatatcatggctggtatgatagaatctgggtga |
38881781 |
T |
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| Q |
101 |
ctacgccgtgannnnnnncaaaaactacattttatagcttctataaaatcaaatcatcgtaatattcacataatatatcaccatgatattaaaaatacac |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| |
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| T |
38881780 |
ctacgccgtgattttttttaaaaactacattttatagcttctataaaatcaaatcatcgtaatattcacataatatatcaccatgatgtcaaacatacac |
38881681 |
T |
|
| Q |
201 |
gcaatagacactgtttccagaaa-ctctttgtcactttagtgctcttgcgtctatggcatgatgattgttgatgtccatc |
279 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
38881680 |
gcaatagacactgtttccagaaacctctttgtaactttagtgctcttgcgtctatggcatgatgaatgttgatgaccatc |
38881601 |
T |
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