View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2085_2D_low_2 (Length: 1307)

Name: NF2085_2D_low_2
Description: NF2085_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2085_2D_low_2
NF2085_2D_low_2
[»] chr1 (8 HSPs)
chr1 (19-1295)||(31229823-31231089)
chr1 (682-920)||(42624006-42624230)
chr1 (682-784)||(18136413-18136516)
chr1 (682-767)||(52946192-52946277)
chr1 (683-775)||(11398282-11398374)
chr1 (683-767)||(52935150-52935234)
chr1 (683-767)||(52942785-52942869)
chr1 (682-737)||(52938560-52938615)
[»] chr5 (2 HSPs)
chr5 (683-919)||(10548172-10548410)
chr5 (769-920)||(30803601-30803767)
[»] scaffold0590 (3 HSPs)
scaffold0590 (682-842)||(4958-5122)
scaffold0590 (849-911)||(4868-4930)
scaffold0590 (849-911)||(7545-7607)
[»] chr4 (5 HSPs)
chr4 (825-916)||(34441548-34441639)
chr4 (683-767)||(40225492-40225576)
chr4 (829-920)||(8332633-8332724)
chr4 (705-774)||(17225256-17225324)
chr4 (29-88)||(24899566-24899629)
[»] chr7 (3 HSPs)
chr7 (683-767)||(47762053-47762137)
chr7 (686-748)||(25998371-25998433)
chr7 (41-88)||(22620682-22620732)
[»] chr2 (1 HSPs)
chr2 (680-771)||(42735257-42735350)
[»] chr3 (4 HSPs)
chr3 (714-787)||(30174398-30174471)
chr3 (53-87)||(5411579-5411613)
chr3 (683-752)||(52098928-52099000)
chr3 (714-752)||(7051121-7051159)
[»] chr6 (3 HSPs)
chr6 (777-843)||(27368877-27368943)
chr6 (777-843)||(27459224-27459290)
chr6 (22-88)||(33293661-33293729)


Alignment Details
Target: chr1 (Bit Score: 1039; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 1039; E-Value: 0
Query Start/End: Original strand, 19 - 1295
Target Start/End: Complemental strand, 31231089 - 31229823
Alignment:
Q  19 agtatagctgtagcttttagttcttttagagtaattctccattaatgaacaaccccaaaagttgttcat-acatccttagtaacttggtcatttctaaac 117  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31231089 agtatagctgtagcttttggttcttttagagtaattctccattaatgaacaaccccaaaagttgttcattacatccttagtaacttggtcatttctaaac 31230990  T
Q  118 tattatatgttcagtagatttggggttgttaccaggtggagatgttggcttctaggcatgtttagtcttggtgttcttgtgaatgagagtcctaatgata 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  31230989 tattatatgttcagtagatttggggttgttaccaggtggagatgttggcttctaggcatgtttagtcttggtgttcttgtgaatgagagtcctaa----- 31230895  T
Q  218 aagtggatatttgttgggagcttgagtggtttgatgagggagacgagtgttcgaggtagatttggggagattgagttgggtaatggaggtatatggtatc 317  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31230894 aagttgatatttgttgggagcttgagtggtttgatgagggagacgagtgttcgaggtagatttggggagattgagttgggtaatggaggtatatggtatc 31230795  T
Q  318 tcgtcttcaatatacatatgatacactattagttgagggagcttcattgataatttggggagtgaagacagtcctaaagtggtttgaggttcctttcgcg 417  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31230794 tcgtcttcaatatacatatgatacactattagttgagagagcttcattgataatttggggagtgaagacagtcctaaagtggtttgaggttcctttcgcg 31230695  T
Q  418 attgtatggtaaacttccacaaaagtcgattgcttggtataaatatcaaagactccttgcaattggcagctacgttcctaaacttcaaggtgggggctat 517  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31230694 attgtatggtaaacttccacaaaagtcgattgcttggtgtaaatatcaaagactccttgcaattggcagctacgttcctaaacttcaaggtgggggctat 31230595  T
Q  518 cccattgacgtacttgggataccagttgggactagtcaaaggagtttgccaacttggaatccaatgacggaggttcttcagaaaagacttcactcatggc 617  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  31230594 cccatttacgtacttgggataccagttgggactagtcaaaggagtttgccaa-ttggaatccaatgacggaggttcttcagaaaagactgcactcatggc 31230496  T
Q  618 ggaagaggtttaatttgttagtttcggggaaagaattgcgttgattaattcagttcttgaaagtatgtaatgagtcttagagttagaaggggcatcatgg 717  Q
    ||||||||     ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||    
T  31230495 ggaagagg-----tttgttagttttggggaaagaattgcgttgattaattcagttcttggaagtatgtaatgagtcttagagttagaaggggcgttatgg 31230401  T
Q  718 gaaataggaatatggacccttataaatatgagaaaaaccaatggaataagcatggaaattgtgatgtcaacattctcctcctaacctcttctcttgtttt 817  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31230400 gaaataggaatatggacccttataaatatgagaaaaaccaatggaataagcatggaaattgtgatgtcaacattctcctcctaacctcttctcttgtttt 31230301  T
Q  818 actatccttattttcctgcaattttac--tctctcattgtgtgttcacagtgaaacattatcaattaactgagatttccttatatcagttttagtatcat 915  Q
    ||||||||||||| |||||||||||||   ||   |||||    || || ||  ||     ||||||| |||||||||||||||||| ||||||||||||    
T  31230300 actatccttatttccctgcaattttacctcctgcaattgtactctctcattg-tactcctgcaattaattgagatttccttatatcaattttagtatcat 31230202  T
Q  916 tacaaagtatgcccattttgaatctatcctttatgaaaatattggttaaggtttggagaatagttgttaaagctcaaaaaaggtttctttagggtagttc 1015  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31230201 tacaaagtatgcccattttcaatctatcctttatgaaaatattggttaaggtttggagaatagttgttaaagctcaaaaaaggtttctttagggtagttc 31230102  T
Q  1016 aagaaatatgagtaaaattgtttaggtcaagtgatcagatgtttgtaggtcaaaatcgatggatgggccgggggttagagatctcagattgcttagttta 1115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31230101 aagaaatatgagtaaaattgtttaggtcaagtgatcagatgtttgtaggtcaaaatcgatggatgggccgggggttagagatctcagattgcttagttta 31230002  T
Q  1116 agcttacttgttaggtgtagatgcggcgcttgttggtggacatgaattctatctagaaagaggtcttgacaacaaagtatggtctaactgattttgagtg 1215  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31230001 agcttacttgttaggtgtagat--ggcgcttgttggtggacatgaattctatctagaaagaggtcttgacaacaaagtatggtctaactgattttgagtg 31229904  T
Q  1216 atcataccaag-nnnnnnnntctcaatcaattttgttgatcataacatagaacaagccatatcatatcaactgatgtccat 1295  Q
    |||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31229903 atcataccaagaaaaaaaaatctcaatcaattttgttgatcataacatagaacaagccatatcatatcaactgatgcccat 31229823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 682 - 920
Target Start/End: Original strand, 42624006 - 42624230
Alignment:
Q  682 atgtaatgagtcttagagttagaaggggcatcatgggaaataggaatatggacccttataaatatgagaaaaaccaatggaataag-catggaaattgtg 780  Q
    ||||||||||||  ||||||  |||| |||| || ||||||  |||| ||||| |||||||||| ||||||  |||| | || ||| |||| ||||||||    
T  42624006 atgtaatgagtcaaagagttgaaaggagcattataggaaatgtgaatgtggactcttataaataagagaaag-ccaaggaaaaaaggcatgaaaattgtg 42624104  T
Q  781 atgtcaacattctcctcctaacctcttctcttgttttactatccttattttcctgcaattttactctctcattgtgtgttcacagtgaaacattatcaat 880  Q
    ||||||||||||| |||||||||||| |||||||||| ||              |||||| ||||||||| |||||||||||||||||||||||||||||    
T  42624105 atgtcaacattcttctcctaacctctcctcttgttttgct--------------gcaattgtactctctcgttgtgtgttcacagtgaaacattatcaat 42624190  T
Q  881 taactgagatttccttatatcagttttagtatcattacaa 920  Q
    ||| |||||||||||||||||| |||||||| ||||||||    
T  42624191 taattgagatttccttatatcaattttagtaccattacaa 42624230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 682 - 784
Target Start/End: Original strand, 18136413 - 18136516
Alignment:
Q  682 atgtaatgagtcttagagttagaaggggcatcatgggaaataggaatatggacccttataaatatgagaaaaa-ccaatggaataagcatggaaattgtg 780  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| ||  ||||    
T  18136413 atgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaaagccaaggaaataagcatgaaatatgtg 18136512  T
Q  781 atgt 784  Q
    ||||    
T  18136513 atgt 18136516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 682 - 767
Target Start/End: Original strand, 52946192 - 52946277
Alignment:
Q  682 atgtaatgagtcttagagttagaaggggcatcatgggaaataggaatatggacccttataaatatgagaaaaaccaatggaataag 767  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| | ||||||    
T  52946192 atgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52946277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 683 - 775
Target Start/End: Complemental strand, 11398374 - 11398282
Alignment:
Q  683 tgtaatgagtcttagagttagaaggggcatcatgggaaataggaatatggacccttataaatatgagaaaaaccaatggaataagcatggaaa 775  Q
    |||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| |||| | |||||| |||||||    
T  11398374 tgtaatgagtcttagagttagaagtggcattatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaataaggatggaaa 11398282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 683 - 767
Target Start/End: Original strand, 52935150 - 52935234
Alignment:
Q  683 tgtaatgagtcttagagttagaaggggcatcatgggaaataggaatatggacccttataaatatgagaaaaaccaatggaataag 767  Q
    |||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| | ||||||    
T  52935150 tgtaatgagtctaaaagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52935234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 683 - 767
Target Start/End: Original strand, 52942785 - 52942869
Alignment:
Q  683 tgtaatgagtcttagagttagaaggggcatcatgggaaataggaatatggacccttataaatatgagaaaaaccaatggaataag 767  Q
    |||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| | ||||||    
T  52942785 tgtaatgagtctaaaagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52942869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 682 - 737
Target Start/End: Original strand, 52938560 - 52938615
Alignment:
Q  682 atgtaatgagtcttagagttagaaggggcatcatgggaaataggaatatggaccct 737  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  52938560 atgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggaccct 52938615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 159; Significance: 5e-84; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 5e-84
Query Start/End: Original strand, 683 - 919
Target Start/End: Original strand, 10548172 - 10548410
Alignment:
Q  683 tgtaatgagtcttagagttagaaggggcatcatgggaaataggaatatggacccttataaatatgagaaaaaccaatggaataagcatggaa-at-tgtg 780  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||| | |||||| |||||| || ||||    
T  10548172 tgtaatgagtcttagagttagaaggggcattatggaaaataggaatatggacctttataaatatgagaaaagccaaggaaataagtatggaatatgtgtg 10548271  T
Q  781 atgtcaacattctcctcctaacctcttctcttgttttactatccttattttcctgcaattttactctctcattgtgtgttcacagtgaaacattatcaat 880  Q
    ||||||||||||| || ||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10548272 atgtcaacattcttcttctaacctcttctctcattttactatccttattttcctgcaattttactctgtcattgtgtgttcacagtgaaacattatcaat 10548371  T
Q  881 taactgagatttccttatatcagttttagtatcattaca 919  Q
    ||| |||||||||||||||||  |||||||| |||||||    
T  10548372 taattgagatttccttatatccattttagtaccattaca 10548410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 769 - 920
Target Start/End: Complemental strand, 30803767 - 30803601
Alignment:
Q  769 atggaaattgtgatgtcaacattctcctcctaacctcttctcttgttttactatccttattttcctgcaat---------------tttactctctcatt 853  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||               |||||| |||||||    
T  30803767 atggaaattgtgatgtcaacattcttctcctaacctcttctcttgttttactatccttattttcctgcaattttatttcctacaattttactatctcatt 30803668  T
Q  854 gtgtgttcacagtgaaacattatcaattaactgagatttccttatatcagttttagtatcattacaa 920  Q
    ||||||||| |||||||||||||||||||| | ||||| |||||||||| |||||||| | ||||||    
T  30803667 gtgtgttcaaagtgaaacattatcaattaatttagattcccttatatcaattttagtaccgttacaa 30803601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 102; Significance: 5e-50; HSPs: 3)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 102; E-Value: 5e-50
Query Start/End: Original strand, 682 - 842
Target Start/End: Complemental strand, 5122 - 4958
Alignment:
Q  682 atgtaatgagtcttagagttagaaggggcatcatgggaaataggaatatggaccct--tataaatatgagaaaaaccaatggaataagcatggaa-at-t 777  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||| |||| | |||||||||| || || |    
T  5122 atgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggacccttatataaatatgagaaaagccaaggaaataagcatgaaatatgt 5023  T
Q  778 gtgatgtcaacattctcctcctaacctcttctcttgttttactatccttattttcctgcaatttt 842  Q
    |||||||||||||||| || ||||||||||||||  |||||||||||||||||||||||||||||    
T  5022 gtgatgtcaacattcttcttctaacctcttctctcattttactatccttattttcctgcaatttt 4958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 849 - 911
Target Start/End: Complemental strand, 4930 - 4868
Alignment:
Q  849 tcattgtgtgttcacagtgaaacattatcaattaactgagatttccttatatcagttttagta 911  Q
    ||||||| ||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||    
T  4930 tcattgtatgttcacagggaaacattatcaattaattgagatttccttatatcaattttagta 4868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590; HSP #3
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 849 - 911
Target Start/End: Complemental strand, 7607 - 7545
Alignment:
Q  849 tcattgtgtgttcacagtgaaacattatcaattaactgagatttccttatatcagttttagta 911  Q
    ||||||| |||||| |||||||||||||||||||| |||||||||||| ||||| ||||||||    
T  7607 tcattgtatgttcatagtgaaacattatcaattaattgagatttccttttatcaattttagta 7545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 4e-32; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 825 - 916
Target Start/End: Complemental strand, 34441639 - 34441548
Alignment:
Q  825 ttattttcctgcaattttactctctcattgtgtgttcacagtgaaacattatcaattaactgagatttccttatatcagttttagtatcatt 916  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||    
T  34441639 ttattttcctgcaattgtactctgtcattgtgtgttcacagtgaaacattatcaattaattgagatttccttatatcaattttagtaccatt 34441548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 683 - 767
Target Start/End: Complemental strand, 40225576 - 40225492
Alignment:
Q  683 tgtaatgagtcttagagttagaaggggcatcatgggaaataggaatatggacccttataaatatgagaaaaaccaatggaataag 767  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||| | ||||||    
T  40225576 tgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggaccctaataaatatgagaaaagccaaggaaataag 40225492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 829 - 920
Target Start/End: Original strand, 8332633 - 8332724
Alignment:
Q  829 tttcctgcaattttactctctcattgtgtgttcacagtgaaacattatcaattaactgagatttccttatatcagttttagtatcattacaa 920  Q
    |||||||||||| |||||| | ||||||| |||||||  |||||||||||||||| |||||||||||||||||| |||||||| ||||||||    
T  8332633 tttcctgcaattatactctgtgattgtgtattcacagcaaaacattatcaattaattgagatttccttatatcaattttagtaccattacaa 8332724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 705 - 774
Target Start/End: Complemental strand, 17225324 - 17225256
Alignment:
Q  705 aggggcatcatgggaaataggaatatggacccttataaatatgagaaaaaccaatggaataagcatggaa 774  Q
    |||||||  ||||||||||| |||| ||||||||||||||| ||||||| |||| | | |||||||||||    
T  17225324 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaagcatggaa 17225256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 24899566 - 24899629
Alignment:
Q  29 tagcttttagtt-cttttagagtaatt---ctccattaatgaacaaccccaaaagttgttcata 88  Q
    |||||||||||  ||||||||||||||   |||||||||||||||| | |||||||||||||||    
T  24899566 tagcttttagtcacttttagagtaattttcctccattaatgaacaatctcaaaagttgttcata 24899629  T

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Target: chr7 (Bit Score: 65; Significance: 6e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 683 - 767
Target Start/End: Original strand, 47762053 - 47762137
Alignment:
Q  683 tgtaatgagtcttagagttagaaggggcatcatgggaaataggaatatggacccttataaatatgagaaaaaccaatggaataag 767  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| | ||||||    
T  47762053 tgtaatgagtcttagagttagaaggggcattatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 47762137  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 686 - 748
Target Start/End: Complemental strand, 25998433 - 25998371
Alignment:
Q  686 aatgagtcttagagttagaaggggcatcatgggaaataggaatatggacccttataaatatga 748  Q
    |||||||| ||||||||||||  |||| |||| |||||||||||| ||||| |||||||||||    
T  25998433 aatgagtcatagagttagaagatgcattatggaaaataggaatatagacccgtataaatatga 25998371  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 22620732 - 22620682
Alignment:
Q  41 cttttagagtaattctcc---attaatgaacaaccccaaaagttgttcata 88  Q
    |||||| |||||||||||   ||||||||||||||||||||||||||||||    
T  22620732 cttttaaagtaattctcctctattaatgaacaaccccaaaagttgttcata 22620682  T

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Target: chr2 (Bit Score: 63; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 680 - 771
Target Start/End: Original strand, 42735257 - 42735350
Alignment:
Q  680 gtatgtaatgagtcttagagttagaaggggcatcatgggaaataggaatatggacc--cttataaatatgagaaaaaccaatggaataagcatg 771  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||  ||| | ||||||||||    
T  42735257 gtatgtaatgagtcttagagttagaaggggcattatgggaaataggaatatggaccctcttataaatatgagaaaaggcaaggaaataagcatg 42735350  T

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Target: chr3 (Bit Score: 46; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 714 - 787
Target Start/End: Complemental strand, 30174471 - 30174398
Alignment:
Q  714 atgggaaataggaatatggacccttataaatatgagaaaaaccaatggaataagcatggaaattgtgatgtcaa 787  Q
    |||||||  ||||||||||| ||||||||||| ||||||| |||| | ||||||||||||||||||||||||||    
T  30174471 atgggaataaggaatatggatccttataaataagagaaaagccaaggaaataagcatggaaattgtgatgtcaa 30174398  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 5411579 - 5411613
Alignment:
Q  53 ttctccattaatgaacaaccccaaaagttgttcat 87  Q
    |||||||||||||||||||||||||||||||||||    
T  5411579 ttctccattaatgaacaaccccaaaagttgttcat 5411613  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 683 - 752
Target Start/End: Original strand, 52098928 - 52099000
Alignment:
Q  683 tgtaatgagtcttagagttagaag---gggcatcatgggaaataggaatatggacccttataaatatgagaaa 752  Q
    ||||||||||||||||||||||||   || ||| || | |||||||||||| ||||||||||||||| |||||    
T  52098928 tgtaatgagtcttagagttagaagaaaggacattatagaaaataggaatatagacccttataaatataagaaa 52099000  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 714 - 752
Target Start/End: Original strand, 7051121 - 7051159
Alignment:
Q  714 atgggaaataggaatatggacccttataaatatgagaaa 752  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  7051121 atgggaaaaaggaatatggacccttataaataagagaaa 7051159  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 777 - 843
Target Start/End: Original strand, 27368877 - 27368943
Alignment:
Q  777 tgtgatgtcaacattctcctcctaacctcttctcttgttttactatccttattttcctgcaatttta 843  Q
    ||||||||||||||||| || |||||| |||||||  ||||||||||||||||||| ||||||||||    
T  27368877 tgtgatgtcaacattcttcttctaaccacttctctcattttactatccttattttcttgcaatttta 27368943  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 777 - 843
Target Start/End: Original strand, 27459224 - 27459290
Alignment:
Q  777 tgtgatgtcaacattctcctcctaacctcttctcttgttttactatccttattttcctgcaatttta 843  Q
    ||||||||||||||||| || |||||| |||||||  ||||||||||||||||||| ||||||||||    
T  27459224 tgtgatgtcaacattcttcttctaaccacttctctcattttactatccttattttcttgcaatttta 27459290  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 33293661 - 33293729
Alignment:
Q  22 atagctgtagcttttagttcttttagagtaattctcc---attaatgaacaaccccaaaagttgttcata 88  Q
    |||| ||||||||||||| |||| |||||||||||||   ||||||||||||| | ||||||||||||||    
T  33293661 atagttgtagcttttagtccttt-agagtaattctcctccattaatgaacaacacaaaaagttgttcata 33293729  T

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