View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085_2D_low_3 (Length: 756)
Name: NF2085_2D_low_3
Description: NF2085_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_2D_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 38014695 - 38014260
Alignment:
| Q |
1 |
cctgcttgcttccctgtttatgtttttatttgctttgtttgcagcttgagaaaggagagaatttcgttgatgtgcttaacccttgcacaaaaaaggagac |
100 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
38014695 |
cctgcttgcttccctgtttaagtttatatttgctttgtttgcagcttgaggaaggagaggatttcactgatgtgcttaacccttgcacaaaaaaggagac |
38014596 |
T |
|
| Q |
101 |
tctagcatatggagactccaatatgcaaaatcttaagcgtggagaagtattacagctggagagaaagggatatttcaggtgtgatgtacccttcgtctgg |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
38014595 |
tctagcatatggagactccaatatgcgaaatcttaagcgtggagaagtattgcagctggagagaaagggatattttaggtgtgatgtacccttcgtccgg |
38014496 |
T |
|
| Q |
201 |
ccttcggaaccaaccgtgttatttgcaatcccagatggcaggcagcagacatctttgaagtaaaaaac---ttttgnnnnnnnaatgacaagttggtaat |
297 |
Q |
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| T |
38014495 |
ccttcgaaaccaatcgtgttatttgcaatcccagatggcaggcagcagacatctttgaagtaaaaatcttttttttgtttttgaatgacaggttggtaat |
38014396 |
T |
|
| Q |
298 |
ttggatagctttgtggaattattttaatgtgtaccagcactactgtgttatgcttataagcaaccttgtatttgggttgtcgactagcaatttgaatata |
397 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38014395 |
ttggatagctttgtggaagtattttaatgtgtaccatcacttcagtgttatgcttataagcaaccttgtatttgggttctcgactagcaatttgaatata |
38014296 |
T |
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| Q |
398 |
ttctctgttttttgtggacaaattgtgagtatgttg |
433 |
Q |
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| T |
38014295 |
ttctctgtattttgtggactattcgtgagtatgttg |
38014260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 666 - 731
Target Start/End: Complemental strand, 38013981 - 38013915
Alignment:
| Q |
666 |
attttgatatttaattgtttaataatcattt-atcaatgtgagagattggttggcaagtatttacaa |
731 |
Q |
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| T |
38013981 |
attttgacatttaattgtttaataatcattttatcaatgtgagagattagttggcaagtatttacaa |
38013915 |
T |
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