View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085_2D_low_5 (Length: 529)
Name: NF2085_2D_low_5
Description: NF2085_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_2D_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 267 - 512
Target Start/End: Complemental strand, 12698139 - 12697894
Alignment:
| Q |
267 |
gcactgatgttatgtttctggagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaattgaatgtccttttccaacagttaaa |
366 |
Q |
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| T |
12698139 |
gcactgatgttatgtttctggagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaattgaatgtccttttccaacagttaaa |
12698040 |
T |
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| Q |
367 |
ctacccattgaaaatgttctcttcaagacttgtaactttcaaagcagtgtcttctattaacatggatgtataattgaactttaatgctattattgagaag |
466 |
Q |
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| T |
12698039 |
ctacccattgaaaatgttctgttcaagacttgtaactttcaaagtagtgtcttctattaacatggatgtataattgaactttaatgctattattgagaag |
12697940 |
T |
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| Q |
467 |
ggatgaataatatgtatttagttaagtatcatttgattgatccatt |
512 |
Q |
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| T |
12697939 |
ggatgaataatatatatttagttaagtatcatttgattgatccatt |
12697894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 12698401 - 12698200
Alignment:
| Q |
1 |
taacttgacatgtcatttgactgtctatgtgacactgtcatatgtttgacgtgtcatgccaagttacatgtggtaatgnnnnnnngatagtttttactat |
100 |
Q |
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| T |
12698401 |
taacttgacatgtcatttgactgtctacgtgacactgccatatgtttgacgtgtcatgccaagttacatgtggtaatgtttttttgatagtttttactat |
12698302 |
T |
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| Q |
101 |
tgttacagttatnnnnnnnnncatacatttcattggtgtcatcgaagaagacgaacatgatttattaggtttgttacaatttaaagatcataatatttat |
200 |
Q |
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| T |
12698301 |
tgttatagttataaaaaaaaacatacatttcattggtgtcttcgaagaagacaaacatgatttattaggtttgttacaatttaaagatcataatatttat |
12698202 |
T |
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| Q |
201 |
ac |
202 |
Q |
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|| |
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| T |
12698201 |
ac |
12698200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 4e-58; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 281 - 478
Target Start/End: Complemental strand, 45077953 - 45077755
Alignment:
| Q |
281 |
tttctggagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaattgaatgtccttttccaacagttaaactacccattgaaaa |
380 |
Q |
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| T |
45077953 |
tttctggagttacaagtaatgtggttcctaaaccatgtgaattgctgcaagagaaggaaattgaatgtccttttccaacagataaactagccatcgaaaa |
45077854 |
T |
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| Q |
381 |
tgttctcttcaagacttgtaactttcaaagcagtgtcttctattaacatggatgtataa-ttgaactttaatgctattattgagaagggatgaataata |
478 |
Q |
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| T |
45077853 |
tgttcaattcaagacttgtaacttccaaagtagtgtcttctgataacatggatgtaaaattttaattttaatgctataattgaaaaggaatgaataata |
45077755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 281 - 457
Target Start/End: Complemental strand, 45082249 - 45082072
Alignment:
| Q |
281 |
tttctggagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaattgaatgtccttttccaacagttaaactacccattgaaaa |
380 |
Q |
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| T |
45082249 |
tttctggagttacaagtaatgtggttcctaaaccatgtgaactgctgaaagagaaggaaattgaatgtccttttccaagagataaactacccattgaaaa |
45082150 |
T |
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| Q |
381 |
tgttctcttcaagacttgtaactttcaaagcagtgtcttctattaacatggatgt-ataattgaactttaatgctatt |
457 |
Q |
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| T |
45082149 |
tgttcaattcaagacttgcaacttccaaagtagtgtcttctgataatgtggatgtaaaaattgaaatttaatgctatt |
45082072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 278 - 410
Target Start/End: Complemental strand, 45067166 - 45067034
Alignment:
| Q |
278 |
atgtttctggagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaattgaatgtccttttccaacagttaaactacccattga |
377 |
Q |
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| T |
45067166 |
atgtttctggagttgcaagtaatgcggttcctaaaccatgtgatatgctgccagagaagaaaatcgaatgtccttttccaacagataaactacccattga |
45067067 |
T |
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| Q |
378 |
aaatgttctcttcaagacttgtaactttcaaag |
410 |
Q |
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| T |
45067066 |
aaatgttcagttcaagacttgtaactttcaaag |
45067034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 278 - 417
Target Start/End: Complemental strand, 45074726 - 45074584
Alignment:
| Q |
278 |
atgtttctggagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaa---ttgaatgtccttttccaacagttaaactacccat |
374 |
Q |
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|||||||||||||||||||||| ||| ||||| ||| |||||||||||| || ||| | || ||||||||||||||||||| | |||||| |||| |
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| T |
45074726 |
atgtttctggagttacaagtaatgtgagtcctacaccctgtgaattgctggcagagaaagaaaaatttgaatgtccttttccaactgataaacttaccat |
45074627 |
T |
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| Q |
375 |
tgaaaatgttctcttcaagacttgtaactttcaaagcagtgtc |
417 |
Q |
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| T |
45074626 |
tgaaaatgttcagttcaagacttgtaacttcaaaagtagtgtc |
45074584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 278 - 421
Target Start/End: Complemental strand, 34504492 - 34504349
Alignment:
| Q |
278 |
atgtttctggagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaattgaatgtccttttccaacagttaaactacccattga |
377 |
Q |
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| T |
34504492 |
atgtttctggagttacaagtaatgtggttcctaaaccatgtgatctgctgtcagagaagaaaattgaatgtccctttccaacagataaattggctattga |
34504393 |
T |
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| Q |
378 |
aaatgttctcttcaagacttgtaactttcaaagcagtgtcttct |
421 |
Q |
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| T |
34504392 |
agatgttcagttcaagacttgtaacattaaaagtagtgtgttct |
34504349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 44157481 - 44157550
Alignment:
| Q |
8 |
acatgtcatttgactgtctatgtgacactgtcatatgtttgacgtgtcatgccaagttacatgtggtaat |
77 |
Q |
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| T |
44157481 |
acatgacatttgactgtctacgtgacactgtcacgtgtctgatgtgtcatgccacgtcacatgttgtaat |
44157550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 33614667 - 33614729
Alignment:
| Q |
14 |
catttgactgtctatgtgacactgtcatatgtttgacgtgtcatgccaagttacatgtggtaa |
76 |
Q |
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| T |
33614667 |
catttgactgtctatgtggcactgccacgtgtttgacgtgtcatgccacgtcacaggtggtaa |
33614729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 30333906 - 30333857
Alignment:
| Q |
133 |
ttggtgtcatcgaagaagacgaacatgatttattaggtttgttacaattt |
182 |
Q |
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| T |
30333906 |
ttggtgtcattgaaaaagataaacatgatttattaggtttgttataattt |
30333857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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