View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085_2D_low_6 (Length: 524)
Name: NF2085_2D_low_6
Description: NF2085_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085_2D_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 15429813 - 15430316
Alignment:
| Q |
1 |
tcataatatggatggttagcatcaaactgattctcataatatggatgggatattgaaagaaatgaaaagtcgaaattcagagatggatatacaaggagag |
100 |
Q |
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| T |
15429813 |
tcataatatggatggttagcatcaaactgattctcataatatggatgggatattgaaagaaatgaaaagtcgaaattcagagatggatatacaaggagag |
15429912 |
T |
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| Q |
101 |
gaggccaagttgttnnnnnnnggagatggaggagttgtaaactcattcatataatttgttcatattatcaaacatttataacaacttgtagtggtaaaat |
200 |
Q |
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| T |
15429913 |
gaggccaagttgttaaaaaaagaagatggag---ttgtaaactcattcatataatttgttcatattatcaaacatttataacaacttgtagtggtaaaat |
15430009 |
T |
|
| Q |
201 |
tctagagtaaagtggcttaattaaggcgatgctaatacaaaaagttagagcaacgatctatgatcactttgcaacttattttaaagaaaatagaatcgag |
300 |
Q |
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| T |
15430010 |
tctagagtaaagtggcttaattaaggcgatgctaatacaaaaagttagagcaacgatctatgatcactttgcaacttattttaaagaaaatagaatcgag |
15430109 |
T |
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| Q |
301 |
agaccttggttggatgatttga-tttaaagtgtctcaacatgactgatagtggaggtctctttagaatggttagtgaagaggaggttaaacacgcaatgt |
399 |
Q |
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| T |
15430110 |
agaccttgtttggatgatttgattttaaagtgtctcaacatgactgatagtggaggtctctttagaatggttagtgaagaggaggttaaacacacaatgt |
15430209 |
T |
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| Q |
400 |
gggattgtgaaaattttaaaagtcttgggtttgatggaatcaattttgtcttcatcaaagatttttagggagaatttaagtcggagtttatgagggtcat |
499 |
Q |
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||||||||||||||||||||||||||| | | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15430210 |
gggattgtgaaaattttaaaagtcttgagccttatggaatcaattttgtcttcgtcaaagatttttagggagaatttaagtcggagtttatgagggtcat |
15430309 |
T |
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| Q |
500 |
ctttgat |
506 |
Q |
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| T |
15430310 |
ctttgat |
15430316 |
T |
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