View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2085_2D_low_7 (Length: 484)

Name: NF2085_2D_low_7
Description: NF2085_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2085_2D_low_7
NF2085_2D_low_7
[»] chr2 (3 HSPs)
chr2 (27-468)||(10586169-10586608)
chr2 (20-88)||(15988381-15988447)
chr2 (20-56)||(19571023-19571059)
[»] chr5 (3 HSPs)
chr5 (20-85)||(17899509-17899573)
chr5 (20-88)||(170600-170667)
chr5 (20-56)||(60086-60122)
[»] chr8 (4 HSPs)
chr8 (20-88)||(37868632-37868699)
chr8 (20-88)||(31079611-31079678)
chr8 (21-88)||(42049737-42049803)
chr8 (20-56)||(37868397-37868433)
[»] chr4 (4 HSPs)
chr4 (21-88)||(7926526-7926592)
chr4 (20-88)||(12005518-12005585)
chr4 (22-88)||(7926296-7926361)
chr4 (20-53)||(21646314-21646347)
[»] chr1 (6 HSPs)
chr1 (23-90)||(49142919-49142985)
chr1 (20-88)||(52907352-52907419)
chr1 (20-83)||(9146603-9146665)
chr1 (20-56)||(31004486-31004522)
chr1 (20-56)||(31181562-31181598)
chr1 (20-88)||(40316099-40316166)
[»] chr3 (3 HSPs)
chr3 (27-88)||(45828214-45828274)
chr3 (20-88)||(13574970-13575037)
chr3 (24-88)||(50052818-50052882)


Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 27 - 468
Target Start/End: Original strand, 10586169 - 10586608
Alignment:
Q  27 gattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaataaaaaacaaactagggaaagtttcttatatgcatatt 126  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  10586169 gattgcccccatttataaacacgtgttcaaagccatattttgtccgatgtgtgactctttaacaaaaa-caaactagggaaagtttcttatatgcatatt 10586267  T
Q  127 tatagaaaaatatttgcaaactgtggcttaaacaaagaatacaagttcttgctcacttcagcatagaagtctaagtctcaaaatttgggtgcatgaagtt 226  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10586268 tatagaaaaatatttgcaaactgtggcttaaacaaagaattcaagttcttgctcacttcagcatagaagtctaagtctcaaaatttgggtgcatgaagtt 10586367  T
Q  227 tccnnnnnnnnnnnnncagtttatggagaggattgttggccgtggttaataagcactgtcaaatatcaaaattaaagcacttctgagagactgtgaacct 326  Q
    |||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10586368 tcctttttaattttt-cagtttatggagaggattgttggccgtggttaataagcactgtcaaatatcaaaattaaagcacttctgagagactgtgaacct 10586466  T
Q  327 ccaagtccgattcatattgaaatttcatcacttgagtgttatcttaatctcactacttaacaacatatgttgggccacattaagttgctcatcatggtaa 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10586467 ccaagtccgattcatattgaaatttcatcacttgagtgttatcttaatctcactacttaacaacatatgttgggccacattaagttgctcatcatggtaa 10586566  T
Q  427 gttaatctacaaatataagtagcaccaaacctagctgtgatg 468  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10586567 gttaatctacaaatataagtagcaccaaacctagctgtgatg 10586608  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 15988447 - 15988381
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    |||||||||||||||||| |||||| ||| |||||| ||||   |||||||||||||| ||||||||||    
T  15988447 aggtgaggattgcccccacttataa-cacatgttca-agccttcttttgtccgatgtgggactctttaa 15988381  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 19571023 - 19571059
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcag 56  Q
    |||||||||||||||||| |||||||||| |||||||    
T  19571023 aggtgaggattgcccccacttataaacacatgttcag 19571059  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 17899509 - 17899573
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctt 85  Q
    |||||||||||||||||| |||||||||| ||||||| |||| |||||||| ||||| ||||||||    
T  17899509 aggtgaggattgcccccacttataaacacatgttcag-gccatattttgtcggatgtatgactctt 17899573  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 170600 - 170667
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    ||||||||| |||||||| |||||||||| || | ||| |||  |||||||||||||||||||||||||    
T  170600 aggtgaggactgcccccacttataaacacatgcttaga-ccatcttttgtccgatgtgtgactctttaa 170667  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 60122 - 60086
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcag 56  Q
    |||||||||||||||||| |||||||||| |||||||    
T  60122 aggtgaggattgcccccacttataaacacatgttcag 60086  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 37868632 - 37868699
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    |||||||||||||||||||| |||||||| ||||||| ||||   ||||||||||||| ||||||||||    
T  37868632 aggtgaggattgcccccattaataaacacatgttcag-gccatcatttgtccgatgtgggactctttaa 37868699  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 31079611 - 31079678
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    |||||||||||||| ||| |||||||||| |||||| ||||| |||||  |||||||| ||||||||||    
T  31079611 aggtgaggattgcctccacttataaacacatgttca-agccatattttacccgatgtgggactctttaa 31079678  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 42049737 - 42049803
Alignment:
Q  21 ggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    ||||||||||||||||| |||||||||| ||| ||| ||||  |||||||| |||| |||||||||||    
T  42049737 ggtgaggattgcccccacttataaacacatgtccag-gccatcttttgtccaatgtttgactctttaa 42049803  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 37868397 - 37868433
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcag 56  Q
    |||||||||||||||||| | ||||||||||||||||    
T  37868397 aggtgaggattgcccccactaataaacacgtgttcag 37868433  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 7926592 - 7926526
Alignment:
Q  21 ggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    ||||||||||||||||| ||| |||||| ||||||| ||||  |||||||||||||| ||||||||||    
T  7926592 ggtgaggattgcccccacttacaaacacatgttcag-gccatcttttgtccgatgtgggactctttaa 7926526  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 12005518 - 12005585
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    |||||||||||||||||| |||| ||||  ||||||  |||| ||||||||||||||| ||||||||||    
T  12005518 aggtgaggattgcccccacttattaacaaatgttcat-gccatattttgtccgatgtgggactctttaa 12005585  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 7926361 - 7926296
Alignment:
Q  22 gtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    ||||||| |||||||| |||||||||| ||||||| ||||  ||||||||||||||  |||||||||    
T  7926361 gtgaggaatgcccccacttataaacacatgttcag-gccatcttttgtccgatgtggaactctttaa 7926296  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 21646314 - 21646347
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgtt 53  Q
    ||||||||||||||||||||||||||||| ||||    
T  21646314 aggtgaggattgcccccatttataaacacatgtt 21646347  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 49142985 - 49142919
Alignment:
Q  23 tgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaata 90  Q
    ||||||||||||||| |||||||||| ||||||  |||| |||||||| |||||| ||||||||||||    
T  49142985 tgaggattgcccccacttataaacacatgttca-tgccatattttgtctgatgtgggactctttaata 49142919  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 52907419 - 52907352
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    |||||||||||||||||| |||||||||| |||||| | ||| ||||| ||||||||| |||| |||||    
T  52907419 aggtgaggattgcccccacttataaacacatgttca-aaccatattttatccgatgtgggactatttaa 52907352  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 9146603 - 9146665
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactc 83  Q
    |||||||||||||||||| ||||| |||| |||||||| |||  |||||||||||||| |||||    
T  9146603 aggtgaggattgcccccagttatatacacatgttcaga-ccatcttttgtccgatgtgggactc 9146665  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 31004486 - 31004522
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcag 56  Q
    |||||||||||||||||| |||||||||| |||||||    
T  31004486 aggtgaggattgcccccacttataaacacatgttcag 31004522  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 31181562 - 31181598
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcag 56  Q
    |||||||||||||||||| |||||||||| |||||||    
T  31181562 aggtgaggattgcccccacttataaacacatgttcag 31181598  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 40316099 - 40316166
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    |||||||||||| ||||| |||||||||| |||| |||  ||  ||||||||||||| |||||||||||    
T  40316099 aggtgaggattgaccccacttataaacacatgtttaga-acatcttttgtccgatgtatgactctttaa 40316166  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 45828274 - 45828214
Alignment:
Q  27 gattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    ||||||||||| |||||||||| ||||||| ||||  |||||||||||||| ||||||||||    
T  45828274 gattgcccccacttataaacacatgttcag-gccatcttttgtccgatgtgggactctttaa 45828214  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 13574970 - 13575037
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    ||||||||||| |||||| |||||||||| ||| ||  |||| ||||||||||||||| ||||||||||    
T  13574970 aggtgaggatttcccccacttataaacacatgtccat-gccatattttgtccgatgtgggactctttaa 13575037  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 50052818 - 50052882
Alignment:
Q  24 gaggattgc-ccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    ||||||||| ||||| |||||||||| || |||| |||| ||||||||||||||| ||||||||||    
T  50052818 gaggattgcaccccacttataaacacatggtcag-gccatattttgtccgatgtgggactctttaa 50052882  T

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