View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2085_2D_low_8 (Length: 484)

Name: NF2085_2D_low_8
Description: NF2085_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2085_2D_low_8
NF2085_2D_low_8
[»] chr2 (3 HSPs)
chr2 (27-468)||(10586169-10586608)
chr2 (20-88)||(15988381-15988447)
chr2 (20-56)||(19571023-19571059)
[»] chr5 (3 HSPs)
chr5 (20-85)||(17899509-17899573)
chr5 (20-88)||(170600-170667)
chr5 (20-56)||(60086-60122)
[»] chr8 (4 HSPs)
chr8 (20-88)||(37868632-37868699)
chr8 (20-88)||(31079611-31079678)
chr8 (21-88)||(42049737-42049803)
chr8 (20-56)||(37868397-37868433)
[»] chr4 (4 HSPs)
chr4 (21-88)||(7926526-7926592)
chr4 (20-88)||(12005518-12005585)
chr4 (22-88)||(7926296-7926361)
chr4 (20-53)||(21646314-21646347)
[»] chr1 (6 HSPs)
chr1 (23-90)||(49142919-49142985)
chr1 (20-88)||(52907352-52907419)
chr1 (20-83)||(9146603-9146665)
chr1 (20-56)||(31004486-31004522)
chr1 (20-56)||(31181562-31181598)
chr1 (20-88)||(40316099-40316166)
[»] chr3 (3 HSPs)
chr3 (27-88)||(45828214-45828274)
chr3 (20-88)||(13574970-13575037)
chr3 (24-88)||(50052818-50052882)


Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 27 - 468
Target Start/End: Original strand, 10586169 - 10586608
Alignment:
Q  27 gattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaataaaaaacaaactagggaaagtttcttatatgcatatt 126  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  10586169 gattgcccccatttataaacacgtgttcaaagccatattttgtccgatgtgtgactctttaacaaaaa-caaactagggaaagtttcttatatgcatatt 10586267  T
Q  127 tatagaaaaatatttgcaaactgtggcttaaacaaagaatacaagttcttgctcacttcagcatagaagtctaagtctcaaaatttgggtgcatgaagtt 226  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10586268 tatagaaaaatatttgcaaactgtggcttaaacaaagaattcaagttcttgctcacttcagcatagaagtctaagtctcaaaatttgggtgcatgaagtt 10586367  T
Q  227 tccnnnnnnnnnnnnncagtttatggagaggattgttggccgtggttaataagcactgtcaaatatcaaaattaaagcacttctgagagactgtgaacct 326  Q
    |||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10586368 tcctttttaattttt-cagtttatggagaggattgttggccgtggttaataagcactgtcaaatatcaaaattaaagcacttctgagagactgtgaacct 10586466  T
Q  327 ccaagtccgattcatattgaaatttcatcacttgagtgttatcttaatctcactacttaacaacatatgttgggccacattaagttgctcatcatggtaa 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10586467 ccaagtccgattcatattgaaatttcatcacttgagtgttatcttaatctcactacttaacaacatatgttgggccacattaagttgctcatcatggtaa 10586566  T
Q  427 gttaatctacaaatataagtagcaccaaacctagctgtgatg 468  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10586567 gttaatctacaaatataagtagcaccaaacctagctgtgatg 10586608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 15988447 - 15988381
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    |||||||||||||||||| |||||| ||| |||||| ||||   |||||||||||||| ||||||||||    
T  15988447 aggtgaggattgcccccacttataa-cacatgttca-agccttcttttgtccgatgtgggactctttaa 15988381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 19571023 - 19571059
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcag 56  Q
    |||||||||||||||||| |||||||||| |||||||    
T  19571023 aggtgaggattgcccccacttataaacacatgttcag 19571059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 17899509 - 17899573
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctt 85  Q
    |||||||||||||||||| |||||||||| ||||||| |||| |||||||| ||||| ||||||||    
T  17899509 aggtgaggattgcccccacttataaacacatgttcag-gccatattttgtcggatgtatgactctt 17899573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 170600 - 170667
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    ||||||||| |||||||| |||||||||| || | ||| |||  |||||||||||||||||||||||||    
T  170600 aggtgaggactgcccccacttataaacacatgcttaga-ccatcttttgtccgatgtgtgactctttaa 170667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 60122 - 60086
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcag 56  Q
    |||||||||||||||||| |||||||||| |||||||    
T  60122 aggtgaggattgcccccacttataaacacatgttcag 60086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 37868632 - 37868699
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    |||||||||||||||||||| |||||||| ||||||| ||||   ||||||||||||| ||||||||||    
T  37868632 aggtgaggattgcccccattaataaacacatgttcag-gccatcatttgtccgatgtgggactctttaa 37868699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 31079611 - 31079678
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    |||||||||||||| ||| |||||||||| |||||| ||||| |||||  |||||||| ||||||||||    
T  31079611 aggtgaggattgcctccacttataaacacatgttca-agccatattttacccgatgtgggactctttaa 31079678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 42049737 - 42049803
Alignment:
Q  21 ggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    ||||||||||||||||| |||||||||| ||| ||| ||||  |||||||| |||| |||||||||||    
T  42049737 ggtgaggattgcccccacttataaacacatgtccag-gccatcttttgtccaatgtttgactctttaa 42049803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 37868397 - 37868433
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcag 56  Q
    |||||||||||||||||| | ||||||||||||||||    
T  37868397 aggtgaggattgcccccactaataaacacgtgttcag 37868433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 7926592 - 7926526
Alignment:
Q  21 ggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    ||||||||||||||||| ||| |||||| ||||||| ||||  |||||||||||||| ||||||||||    
T  7926592 ggtgaggattgcccccacttacaaacacatgttcag-gccatcttttgtccgatgtgggactctttaa 7926526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 12005518 - 12005585
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    |||||||||||||||||| |||| ||||  ||||||  |||| ||||||||||||||| ||||||||||    
T  12005518 aggtgaggattgcccccacttattaacaaatgttcat-gccatattttgtccgatgtgggactctttaa 12005585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 7926361 - 7926296
Alignment:
Q  22 gtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    ||||||| |||||||| |||||||||| ||||||| ||||  ||||||||||||||  |||||||||    
T  7926361 gtgaggaatgcccccacttataaacacatgttcag-gccatcttttgtccgatgtggaactctttaa 7926296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 21646314 - 21646347
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgtt 53  Q
    ||||||||||||||||||||||||||||| ||||    
T  21646314 aggtgaggattgcccccatttataaacacatgtt 21646347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 49142985 - 49142919
Alignment:
Q  23 tgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaata 90  Q
    ||||||||||||||| |||||||||| ||||||  |||| |||||||| |||||| ||||||||||||    
T  49142985 tgaggattgcccccacttataaacacatgttca-tgccatattttgtctgatgtgggactctttaata 49142919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 52907419 - 52907352
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    |||||||||||||||||| |||||||||| |||||| | ||| ||||| ||||||||| |||| |||||    
T  52907419 aggtgaggattgcccccacttataaacacatgttca-aaccatattttatccgatgtgggactatttaa 52907352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 9146603 - 9146665
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactc 83  Q
    |||||||||||||||||| ||||| |||| |||||||| |||  |||||||||||||| |||||    
T  9146603 aggtgaggattgcccccagttatatacacatgttcaga-ccatcttttgtccgatgtgggactc 9146665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 31004486 - 31004522
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcag 56  Q
    |||||||||||||||||| |||||||||| |||||||    
T  31004486 aggtgaggattgcccccacttataaacacatgttcag 31004522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 31181562 - 31181598
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcag 56  Q
    |||||||||||||||||| |||||||||| |||||||    
T  31181562 aggtgaggattgcccccacttataaacacatgttcag 31181598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 40316099 - 40316166
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    |||||||||||| ||||| |||||||||| |||| |||  ||  ||||||||||||| |||||||||||    
T  40316099 aggtgaggattgaccccacttataaacacatgtttaga-acatcttttgtccgatgtatgactctttaa 40316166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 45828274 - 45828214
Alignment:
Q  27 gattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    ||||||||||| |||||||||| ||||||| ||||  |||||||||||||| ||||||||||    
T  45828274 gattgcccccacttataaacacatgttcag-gccatcttttgtccgatgtgggactctttaa 45828214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 13574970 - 13575037
Alignment:
Q  20 aggtgaggattgcccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    ||||||||||| |||||| |||||||||| ||| ||  |||| ||||||||||||||| ||||||||||    
T  13574970 aggtgaggatttcccccacttataaacacatgtccat-gccatattttgtccgatgtgggactctttaa 13575037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 50052818 - 50052882
Alignment:
Q  24 gaggattgc-ccccatttataaacacgtgttcagagccacattttgtccgatgtgtgactctttaa 88  Q
    ||||||||| ||||| |||||||||| || |||| |||| ||||||||||||||| ||||||||||    
T  50052818 gaggattgcaccccacttataaacacatggtcag-gccatattttgtccgatgtgggactctttaa 50052882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University