View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20860_high_11 (Length: 315)
Name: NF20860_high_11
Description: NF20860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20860_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 28 - 309
Target Start/End: Original strand, 27776244 - 27776526
Alignment:
| Q |
28 |
cagaaaccactcaaact-acatcagggtgaattgaatcagaaatcttgaggaggagcacattttcaggtcccaagacaatatgatcatgtcagcccaagt |
126 |
Q |
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||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27776244 |
cagaaaccactcaaactgacatcagggtgaatcgaaccagaaactttgaggaggagcacactttcaggtcccaagacaatatgatcatgtcagcccaagt |
27776343 |
T |
|
| Q |
127 |
aggttactaacatcattttgaaacatcaacaggaaattcatgaacctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacac |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27776344 |
aggttactaacatcattttgaaacatcaacaggaaattcatgaagctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacac |
27776443 |
T |
|
| Q |
227 |
caaacagcagtgttacatttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttccctttgcttc |
309 |
Q |
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| T |
27776444 |
caaacagcagtgttacatttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttcccttagcttc |
27776526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 10280138 - 10280063
Alignment:
| Q |
202 |
aggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgccaaatc |
277 |
Q |
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||||||||||||| | |||||| ||||||||||||| ||| ||||||||||| ||||| || |||||||||||| |
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| T |
10280138 |
aggatcaacattcttcaaagcataccaaacagcagtattaaccttaaatccagatccaaaagccatttgccaaatc |
10280063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 144 - 309
Target Start/End: Original strand, 19742722 - 19742887
Alignment:
| Q |
144 |
ttgaaacatcaacaggaaattcatgaacctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttaca |
243 |
Q |
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||||||||||||||||||| |||| | |||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19742722 |
ttgaaacatcaacaggaaactcatttatctcatcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacagcagtgttaca |
19742821 |
T |
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| Q |
244 |
tttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttccctttgcttc |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||| |
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| T |
19742822 |
cttaaatccagacccaaatgcaatttgccaaatcctatcaccttttcttattcttcctttagcttc |
19742887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 144 - 309
Target Start/End: Complemental strand, 19797366 - 19797201
Alignment:
| Q |
144 |
ttgaaacatcaacaggaaattcatgaacctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttaca |
243 |
Q |
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||||||||||||||||||| |||| | |||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19797366 |
ttgaaacatcaacaggaaactcatttatctcatcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacagcagtgttaca |
19797267 |
T |
|
| Q |
244 |
tttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttccctttgcttc |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||| |
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| T |
19797266 |
cttaaatccagacccaaatgcaatttgccaaatcctatcaccttttcttattcttcctttagcttc |
19797201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 144 - 309
Target Start/End: Original strand, 19539679 - 19539844
Alignment:
| Q |
144 |
ttgaaacatcaacaggaaattcatgaacctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttaca |
243 |
Q |
| |
|
||||||||||||||||||| ||| | |||||||||||||||||| ||||| |||| |||||||||||| |||| ||||||||||||||||||||||| |
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| T |
19539679 |
ttgaaacatcaacaggaaactcacttatctcatcactccaaggattgatctctttaattggatcaacattctttaatgcacaccaaacagcagtgttaca |
19539778 |
T |
|
| Q |
244 |
tttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttccctttgcttc |
309 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||| |
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| T |
19539779 |
cttaaatctagacccaaatgcaatttgccaaatcctatcaccttttcttattcttcctttagcttc |
19539844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 144 - 288
Target Start/End: Original strand, 19671602 - 19671746
Alignment:
| Q |
144 |
ttgaaacatcaacaggaaattcatgaacctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttaca |
243 |
Q |
| |
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|||||||||||| |||||| ||| | |||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
19671602 |
ttgaaacatcaagaggaaactcacttatctcatcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacaggagtgttaca |
19671701 |
T |
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| Q |
244 |
tttaaatccagacccaaatgcaatttgccaaatcctatcaccttt |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19671702 |
cttaaatccagacccaaatgcaatttgccaaatcctatcaccttt |
19671746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 297
Target Start/End: Complemental strand, 34053481 - 34053333
Alignment:
| Q |
149 |
acatcaacaggaaattcatgaacctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaa |
248 |
Q |
| |
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|||| ||||||||| ||||||| |||||| |||| ||||| |||||||| | |||||||| |||| || |||| ||| |||||| |||||||||||| |
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| T |
34053481 |
acatgaacaggaaactcatgaatctcatccatccatggatttttctccttagctggatcaacggtcctcaatgcacgccacacagcactgttacatttaa |
34053382 |
T |
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| Q |
249 |
atccagacccaaatgcaatttgccaaatcctatcacctttccttatcct |
297 |
Q |
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||||||| |||||||||||||||||| ||||||||||||| || ||||| |
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| T |
34053381 |
atccagaaccaaatgcaatttgccaagtcctatcaccttttctaatcct |
34053333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 288
Target Start/End: Complemental strand, 15239782 - 15239643
Alignment:
| Q |
149 |
acatcaacaggaaattcatgaacctcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaa |
248 |
Q |
| |
|
|||| ||||||||| ||||||| ||||||| |||||||||| ||||||| |||||| || | || | || || |||||||||| | ||||| |||| |
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| T |
15239782 |
acatgaacaggaaactcatgaatctcatcaatccaaggattcttctcctttgcaggattaatagtcttcaatgctttccaaacagcactattacacttaa |
15239683 |
T |
|
| Q |
249 |
atccagacccaaatgcaatttgccaaatcctatcaccttt |
288 |
Q |
| |
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| ||||| |||||||||||||||||| | ||||||||||| |
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|
| T |
15239682 |
aaccagaaccaaatgcaatttgccaagttctatcaccttt |
15239643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 27445061 - 27445001
Alignment:
| Q |
66 |
gaaatcttgaggaggagcacattttcaggtcccaagacaatatgatcatgtcagcccaagt |
126 |
Q |
| |
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|||| |||||||||||||||| | || ||||||||| ||||| ||||||||| ||||||| |
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| T |
27445061 |
gaaaccttgaggaggagcacactctctggtcccaagtcaataccatcatgtcaacccaagt |
27445001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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