View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20860_high_12 (Length: 301)
Name: NF20860_high_12
Description: NF20860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20860_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 16240859 - 16241116
Alignment:
| Q |
14 |
atgaacaaggttgataccatgaacaaacaagataataacatcaatgatagcacatcgtaacaaaatcaattaattccaatatagacttaaaaatctgaga |
113 |
Q |
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| T |
16240859 |
atgaacaaggttgataccatgaacaaacaagataataacatcaatgatagcacatcgtaacaaaatcaattaattccaatatagacttaaaaatctgaga |
16240958 |
T |
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| Q |
114 |
atggtttgaaaaattaaacaaataggcaaagaatcaacnnnnnnnnnnnnnnaacgaggtgcgaagaacttctttgataattaagattttgcaatcaata |
213 |
Q |
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| T |
16240959 |
atggtttgaaaaattaaacaaataggcaaagaa--atagaatcagagagagagaggaggtgcgaagaacatctttgataattaagattttgcaatcaata |
16241056 |
T |
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| Q |
214 |
gaagagaaataaagattcgatgaaagaaaaatgaaagggaacaatatttgccatccatct |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16241057 |
gaagagaaataaagattcgatgaaagaaaaatgaaaggtaacaatatttgccatccatct |
16241116 |
T |
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