View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20860_high_2 (Length: 406)
Name: NF20860_high_2
Description: NF20860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20860_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 274 - 377
Target Start/End: Complemental strand, 2659826 - 2659724
Alignment:
| Q |
274 |
tgtacaccacgtctgaacaccctgtgcccgcaaaccttgcccttttcacatgttatcatgtgaaaataagaatatgaaaatcattttgaatatcaaatca |
373 |
Q |
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| T |
2659826 |
tgtacaccacgtgtga-cagcctatggccgcaaaccgtgccctattcacatgtcatcgtgtgaaaataagaatatgaaaatcattttgaaaatcaagtca |
2659728 |
T |
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| Q |
374 |
tatg |
377 |
Q |
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|||| |
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| T |
2659727 |
tatg |
2659724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 2929196 - 2929264
Alignment:
| Q |
270 |
taattgtacaccacgtctgaacaccctgtgcccgcaaaccttgcccttttcacatgttatcatgtgaaa |
338 |
Q |
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| T |
2929196 |
taattgtacaccacgtttgaacaccctgtagccgcaaaccgtgctcttttcacatgtcatcatgtgaaa |
2929264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 3004516 - 3004474
Alignment:
| Q |
333 |
gtgaaaataagaatatgaaaatcattttgaatatcaaatcata |
375 |
Q |
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| T |
3004516 |
gtgaaaataagaatatgaaaatcattttgaaaatcaaatcata |
3004474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 2990447 - 2990378
Alignment:
| Q |
270 |
taattgtacaccacgtctgaacaccctgtgcccgcaaaccttgcccttttcacatgttatcatgtgaaaa |
339 |
Q |
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| T |
2990447 |
taattgtacaccatatgtgaacaccttgtggccgcaaaccgtgccctttttacatgtcataatgtgaaaa |
2990378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 2998288 - 2998251
Alignment:
| Q |
233 |
tgataattggtcaaattagtcaaaatcatcaaataatt |
270 |
Q |
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| T |
2998288 |
tgataattggtcaaattagtcaaagtcatcaaataatt |
2998251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 3004559 - 3004519
Alignment:
| Q |
236 |
taattggtcaaattagtcaaaatcatcaaataattaattgt |
276 |
Q |
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| T |
3004559 |
taattggtgaaattagtcaaaatcatcaaatagttaattgt |
3004519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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