View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20860_high_3 (Length: 364)
Name: NF20860_high_3
Description: NF20860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20860_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 172 - 334
Target Start/End: Complemental strand, 37322073 - 37321911
Alignment:
| Q |
172 |
tcccactcgcatttgctagtaggaggttgctgattccagctggaggtgcaacaaaagactggtgtgcctcatgagagctagcctcaatctttgtaaggta |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37322073 |
tcccactcgcatttgctagtaggaggttgctgattccagctggaggtgcaacaaaagactggcgtgcctcatgagagctagcctcaatctttgcaaggta |
37321974 |
T |
|
| Q |
272 |
atcaacacagacattaccttccgttaacaggttgcttaatcaacttgattgctgttttagaat |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37321973 |
atcaacacagacattaccttccgttaacaggttgcttaatccacttgattgctgttttagaat |
37321911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 37322216 - 37322126
Alignment:
| Q |
29 |
caattataagtaatgtcatcccannnnnnnagaaatgaaaattatcctaaatgattttactcatatcaaatcattatttattttttggtaa |
119 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37322216 |
caattataactaatgtcatcccatttttttagaaatgaaaattatcctaaatgattttactcatatcaaatcattatttattttttggtaa |
37322126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 293
Target Start/End: Original strand, 51306542 - 51306648
Alignment:
| Q |
186 |
gctagtaggaggttgctgattccagctggaggtgcaacaaaagactggtgtgcctcatgagagctagcctcaatctttgtaaggtaatcaacacagacat |
285 |
Q |
| |
|
||||||||||| ||| |||||| | ||||||||||| |||| ||||||| |||||| || ||||||| ||||||||| |||| |||| ||||||||| |
|
|
| T |
51306542 |
gctagtaggagtttgttgattctaactggaggtgcagcaaaggactggtacgcctcaagaaggctagcc-caatctttgcaaggcaatccgcacagacat |
51306640 |
T |
|
| Q |
286 |
taccttcc |
293 |
Q |
| |
|
|||||||| |
|
|
| T |
51306641 |
taccttcc |
51306648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University