View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20862_high_1 (Length: 593)
Name: NF20862_high_1
Description: NF20862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20862_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 32 - 584
Target Start/End: Original strand, 52887406 - 52887937
Alignment:
| Q |
32 |
cgtattattcattgatttatgaaacataaaatgagtgagctaaaactaaagtattaagaaagaaaaaagcagaaaggaaggacattatagtaaataaaca |
131 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52887406 |
cgtattattcattcatttatgaa-cataaaatgagtgagctaaag-taaagtattaagaaagaaaaaagcagaaaggaaggacattatagtaaataaaca |
52887503 |
T |
|
| Q |
132 |
aggtagaataattgaagagatagtaaaaaagatactgaggaggcgaatggtagtggtcccacaataggaacaagaaagaaactgagcactgtctcttcct |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52887504 |
aggtagaataattgaagagatagtaaaaaagatactgaggaggtgaatggtagtggtcccacaataggaacaagaaagaaactgagcactgtctcttcct |
52887603 |
T |
|
| Q |
232 |
ccgttctcatctgtatcttactaaggtaaggtgagacctccactctgcaagtgtatgttactgtgnnnnnnnnnnnnnnnagagtcggtggtgtgcttat |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
52887604 |
ccgttctcatctgtatcttactaaggtaaggtgagacctccactctgcaagtgtatgttactgtg----tctctctctctagagtcggtggtgtgcttat |
52887699 |
T |
|
| Q |
332 |
tcttcttctctctcgacctctatatgtcagtcttgcctatatctacacactctctcaacggaccttttccttttatcttccttctcccgtgacccttcta |
431 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52887700 |
tcttcttcactctc--tctctatatgtcagtcttgcctatatctacacactctctcaacggaccttttccttttatcttccttctcccgtgacccttcta |
52887797 |
T |
|
| Q |
432 |
tctctctctcctctgtctccatctcacttataactcttcttataattaacactcctatgctactccactcttcaattcattggccaccctcctttcttca |
531 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
52887798 |
tctctct---ctctctctccatctcacttataactcttcttataattaacactcttat----------ccttcaattcattggccaccctcctttcttca |
52887884 |
T |
|
| Q |
532 |
ctgtactttcctttctcctcgggcaactccaatttcctttctttactctctgc |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52887885 |
ctgtactttcctttctcctcgggcaactccaatttcctttctttactctctgc |
52887937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University