View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20862_high_2 (Length: 497)
Name: NF20862_high_2
Description: NF20862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20862_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 30 - 480
Target Start/End: Complemental strand, 44142705 - 44142255
Alignment:
| Q |
30 |
gagaagttatgccagtctaataaatcttacaaatatagaatccaattgaatctaataatacaccgtctttctttgacatcaccaaaaatgctatcttata |
129 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44142705 |
gagaagttatggcagtctaataaatcttacaaatatagaatccaattgaatctaataatacaccgtctttctttgacatcacgaaaaatgctatcttata |
44142606 |
T |
|
| Q |
130 |
taatggttagtttataatgtaatgtataagttagtatgaataaacatatgtttggtttcaattttgggagtcaaaattattttagaacttggatttatgg |
229 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44142605 |
taatggttagtttattatgtaatgtataagttagtatgaataaacatatgtttggtttcaattttgggagtcaaaattattttagaacttggatttatgg |
44142506 |
T |
|
| Q |
230 |
ttttattagggctgtaaagaatttacatagctccactttgttttctgggtgcaaatttcattggacgtgaacatagttttattaatttattttcttacta |
329 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
44142505 |
ttttattagggctataaagaatttacatagctccactttgttttctgggtgcaaatttcatttactctgaacatggttttattaatttattttcttacta |
44142406 |
T |
|
| Q |
330 |
cagtttttccataccaaatgaaactctgagccatgcctttggctatttttgtttaattcttcacagttcattcaccagtgatccctcagggagacataat |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
44142405 |
cagtttttccataccaaatgaaactctgagccatgcctttggctatttttgtttaattcttcacagttcactcaccactgatccctcagggagacataat |
44142306 |
T |
|
| Q |
430 |
tcaccccatttcctacctttttctccttacccttatctttgatgatgtcca |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
44142305 |
tcaccccatttcctacctttttctccttacccttatcttttatgatttcca |
44142255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 43 - 196
Target Start/End: Complemental strand, 44121840 - 44121691
Alignment:
| Q |
43 |
agtctaataaatcttacaaatatagaatccaattgaatctaataatacac--cgtctttctttgacatcaccaaaaatgctatcttatataatggttagt |
140 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| | || |||||||| | || |||||||||||| | |||||||||||| || ||||||||||| |
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| T |
44121840 |
agtctaatcaatcttacaaatatagaatccaattgactatagtaatacactatggctctctttgacatca-cgaaaatgctatctaatttaatggttagt |
44121742 |
T |
|
| Q |
141 |
ttataatgtaatgtataagttagtatgaataaacatatgtttggtttcaattttgg |
196 |
Q |
| |
|
||| | || |||||||||| |||||||| |||||||||||||| |||||||| |
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| T |
44121741 |
tta-----tcatatataagttagcatgaataagcatatgtttggttttaattttgg |
44121691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 30 - 480
Target Start/End: Complemental strand, 50063368 - 50062907
Alignment:
| Q |
30 |
gagaagttatgccagtctaataaatcttacaaatatagaatccaattgaatctaataatacaccgtctttctttgacatcaccaaaaatgctatcttata |
129 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50063368 |
gagaagttatggcagtctaatatatcttacaaatatagaatccaattgaatctaataatacaccgtctttctttgacatcaccaaaaatgttatcttata |
50063269 |
T |
|
| Q |
130 |
taatggttagtttataatgtaatgtataagttagtatgaataaacatatgtttggtttcaattttgggagtcaaaattattttagaacttggatttatgg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50063268 |
taatggttagtttataatgtaatgtataagttagtatgaataagcctatgtttggtttcaattttgggagtcaaaattattttagaacttggatttatgg |
50063169 |
T |
|
| Q |
230 |
ttttattagggctgtaaagaatttacatagctccactttgttttctgggtgcaaatttcattggacgtgaacatagttttattaatttattttcttacta |
329 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
50063168 |
ttttattagggctgtaaagaatttccatagctccactttgttttctgggtgcaaatttcatttactctgaacatagttttattaatttattttcttacta |
50063069 |
T |
|
| Q |
330 |
cagtttttccataccaaatgaaactctgagccatgcctttggctatttttgtttaattcttcacagttcattcaccagtgatccctcagggaga------ |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||| || |
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| T |
50063068 |
cagtttttccataccaaatgaaactctgagccatgcctttggctatttttgtttaattcttcatagttcactcaccactgatccctcagggtgacgtcca |
50062969 |
T |
|
| Q |
424 |
-----cataattcaccccatttcctacctttttctccttacccttatctttgatgatgtcca |
480 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| |
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|
| T |
50062968 |
cacttcataattcaccccatttccaacctttttctccttacccttatcttttatgatttcca |
50062907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 196
Target Start/End: Complemental strand, 50024513 - 50024351
Alignment:
| Q |
30 |
gagaagttatgccagtctaataaatcttacaaatatagaatccaattgaatctaataatacac--cgtctttctttgacatcaccaaaaatgctatctta |
127 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||||||||||||||| | || |||||||| | || |||||||||||| | |||||||||||| | |
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|
| T |
50024513 |
gagaaattatggtagtctaatcaatcttacaaatatagaatccaattgactatagtaatacactatggctctctttgacatca-cgaaaatgctatctaa |
50024415 |
T |
|
| Q |
128 |
tataatggttagtttataatgtaatgtataagttagtatgaataaacatatgtttggtttcaattttgg |
196 |
Q |
| |
|
| |||||||||||||| | || |||||||||| |||||||| |||||||||||||| |||||||| |
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|
| T |
50024414 |
tttaatggttagttta-----tcatttataagttagcatgaataagcatatgtttggttttaattttgg |
50024351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 196
Target Start/End: Complemental strand, 50031631 - 50031469
Alignment:
| Q |
30 |
gagaagttatgccagtctaataaatcttacaaatatagaatccaattgaatctaataatacac--cgtctttctttgacatcaccaaaaatgctatctta |
127 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||||||||||||||| | || |||||||| | || |||||||||||| | |||||||||||| | |
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| T |
50031631 |
gagaaattatggtagtctaatcaatcttacaaatatagaatccaattgactatagtaatacactatggctctctttgacatca-cgaaaatgctatctaa |
50031533 |
T |
|
| Q |
128 |
tataatggttagtttataatgtaatgtataagttagtatgaataaacatatgtttggtttcaattttgg |
196 |
Q |
| |
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| |||||||||||||| | || |||||||||| |||||||| |||||||||||||| |||||||| |
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|
| T |
50031532 |
tttaatggttagttta-----tcatttataagttagcatgaataagcatatgtttggttttaattttgg |
50031469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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