View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20862_high_3 (Length: 380)
Name: NF20862_high_3
Description: NF20862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20862_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 73 - 287
Target Start/End: Complemental strand, 38051897 - 38051672
Alignment:
| Q |
73 |
caaggcatagaataaacaacagatagagtgaaaggggcatgataagagaggttgttggtgccaacagtgctgttaagtagagtgtaaagagtttggatga |
172 |
Q |
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| T |
38051897 |
caaggcatagaataaacaacagatagagtgaaaagg-catcataagagaggttg---gtgccaacagtgctgttaagtagagggtaaagagtttggatga |
38051802 |
T |
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| Q |
173 |
gaaggtagctgc-------------cacacattgaatcatattgatgcctatca-cat-atatagcagcgtctcatcttgttgttttcggtattgttaca |
257 |
Q |
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| T |
38051801 |
gaaggtagctgcaacatagaagcagcacacattgaatcatattgatgcctatcagtatcacatagcagcgtctgatcttgttgttttcggtattgttaca |
38051702 |
T |
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| Q |
258 |
acacaatgtcagttctttcttcatgataag |
287 |
Q |
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| T |
38051701 |
acacaaggtcagttctttcttcatgataag |
38051672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 38051506 - 38051438
Alignment:
| Q |
303 |
ggaattaaatcaatactatgaatggtgccttaatttagttgcaatatcacgcttctcaaatagaataat |
371 |
Q |
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| T |
38051506 |
ggaattaaatcaatactatgaatggtgccttaatttagttgcaatgtcacgcttctcaaatagaataat |
38051438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 38052040 - 38052002
Alignment:
| Q |
28 |
caataagaagatacatacttacatacgtacatacatatt |
66 |
Q |
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| T |
38052040 |
caataagaagatacatacttacatacgtacatacatatt |
38052002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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