View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20862_high_5 (Length: 340)
Name: NF20862_high_5
Description: NF20862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20862_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 55 - 307
Target Start/End: Original strand, 39961712 - 39961964
Alignment:
| Q |
55 |
aacctgtgagagaattacaatctgttcccctttaaaccttgcaaatgaataacgcgcctttgccaataactttagctgatcatgaaaagagaaggnnnnn |
154 |
Q |
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| T |
39961712 |
aacctgtgagagaattacaatctgttcccctttaaaccttgcaaatgaataacgcgcctttgccaataactttagctgatcatgaaaagagagaaaaaaa |
39961811 |
T |
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| Q |
155 |
nnnnctcaatcacaaactcattgcttttcagctttgtgctttaaggctaatccgcaaattcaaaacttacccctatacaatcttcacgttcctccctgtc |
254 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39961812 |
aaaactcaatcacaaactcattgctttccagctttgtgctttaaggctaatccgcaaattcaaaacttacccctatacaatcttcacgttcctccctgtc |
39961911 |
T |
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| Q |
255 |
aaaagttacataattaattgatgaaataaataataattcatcaaaaggagacc |
307 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39961912 |
aaaagttacataattaattaatgaaataaataataattcatcaaaaggagacc |
39961964 |
T |
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