View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20862_high_6 (Length: 329)
Name: NF20862_high_6
Description: NF20862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20862_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 298
Target Start/End: Original strand, 31623587 - 31623884
Alignment:
| Q |
13 |
atgaaagaaaactgaaattctccaccataagaatacaaaaacaatatccattaattacatgaaaaaattaattaaaacaagtcctaattaatgtgcatta |
112 |
Q |
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| T |
31623587 |
atgaaagaaaactgaaattctccaccataagaatacaaaaacaatatccattaattacatgaaaaaattaattaaaacaactcctaattaatgtgcatta |
31623686 |
T |
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| Q |
113 |
aacaatgttgaacctacaaagaggatcgaaaaaagataaatcaccacccactcattgccagtaagattgaatgcaaaagtgttgtcaagttgatcttcat |
212 |
Q |
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| T |
31623687 |
aacaatgttgaacctacaaagaggatcgaaaaaagataaatcaccacccactcattgccagtaagattgaatgcaaaagtgttgtcaagttgatcttcat |
31623786 |
T |
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| Q |
213 |
catcatcagaatc------------ttttggtagctttgtaaaattcgtgtgtggaccagtccccaatcctcctccacctgtgctacctggtggtttc |
298 |
Q |
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| T |
31623787 |
catcatcagaatcttttggtggattttttggtagctttgtaatattcgtgtgtggaccagtccccaatcctcctccacctgtgctacctggtggtttc |
31623884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 29 - 222
Target Start/End: Original strand, 31605010 - 31605202
Alignment:
| Q |
29 |
attctccaccataagaatacaaaaacaatatccattaattacatgaaaaaattaattaaaacaagtcctaattaatgtgcattaaacaatgttgaaccta |
128 |
Q |
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| T |
31605010 |
attccccacaataagaatcccaaaacaacgtccattaatttcatgagaaaattaattaaaacaactc-taattaatgtgctttaaacaatgttgaaccta |
31605108 |
T |
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| Q |
129 |
caaagaggatcgaaaaaagataaatcaccacccactcattgccagtaagattgaatgcaaaagtgttgtcaagttgatcttcatcatcatcaga |
222 |
Q |
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| T |
31605109 |
caaagaggatcaaaagaagaaaaaccaccacccactcattgctggtaagattgaatgcaaaagtgttgtcaagttgatcttcatcgtcatcaga |
31605202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 91 - 224
Target Start/End: Original strand, 31618988 - 31619121
Alignment:
| Q |
91 |
aagtcctaattaatgtgcattaaacaatgttgaacctacaaagaggatcgaaaaaagataaatcaccacccactcattgccagtaagattgaatgcaaaa |
190 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
31618988 |
aagtcctagttaatgtgctttaaacaatgttgaacctacaaagaggatcaaaaaaagaaaaatcaccacccactccttgccagtaagattgaatgcaaaa |
31619087 |
T |
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| Q |
191 |
gtgttgtcaagttgatcttcatcatcatcagaat |
224 |
Q |
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| T |
31619088 |
gtgttatcaagttgatcttcatcgtcatcagaat |
31619121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 31608315 - 31608397
Alignment:
| Q |
150 |
aaatcaccacccactcattgccagtaagattgaatgcaaaagtgttgtcaagttgatcttcatcatcatcagaatcttttggt |
232 |
Q |
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| T |
31608315 |
aaatcaccactcactcattgccagtaagattgaatgcagaagtgttgtcaagttgatcttcatcatcatcagaattttttggt |
31608397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 31612758 - 31612826
Alignment:
| Q |
40 |
taagaatacaaaaacaatatccattaattacatgaaaaaattaattaaaacaagtcctaattaatgtgc |
108 |
Q |
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| T |
31612758 |
taagaatgccaaaacaatatccattaatttcatgagaaaattaattaaaacaaatcctaattaatgtgc |
31612826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 31607282 - 31607398
Alignment:
| Q |
20 |
aaaactgaaattctccaccataagaatacaaaaacaatatccattaattacatgaaaaaattaattaaaacaagtcctaattaatgtgcattaaacaatg |
119 |
Q |
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| T |
31607282 |
aaaacttaaattcccaacaataagaacgccaaaacaatatccactaatttaatgacat--ttaattaaatcaacttctaattaatgtgctttaaacaatg |
31607379 |
T |
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| Q |
120 |
ttgaacctacaaagaggat |
138 |
Q |
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| T |
31607380 |
tcaaacctacaaagaggat |
31607398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 31612895 - 31612933
Alignment:
| Q |
194 |
ttgtcaagttgatcttcatcatcatcagaatcttttggt |
232 |
Q |
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| T |
31612895 |
ttgtcaagttgatcttcatcatcatcagaattttttggt |
31612933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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