View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20862_high_9 (Length: 314)
Name: NF20862_high_9
Description: NF20862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20862_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 86 - 290
Target Start/End: Complemental strand, 7090031 - 7089827
Alignment:
| Q |
86 |
cagagtcaatgggctaatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgcgcacttgtag |
185 |
Q |
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| T |
7090031 |
cagagtcaatgggctaatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgtgcacttgtag |
7089932 |
T |
|
| Q |
186 |
cttgtgcctcagtttgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaagca |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7089931 |
cttgtgcctcagtttgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaagca |
7089832 |
T |
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| Q |
286 |
ggtaa |
290 |
Q |
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||||| |
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| T |
7089831 |
ggtaa |
7089827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 86 - 290
Target Start/End: Complemental strand, 7669857 - 7669653
Alignment:
| Q |
86 |
cagagtcaatgggctaatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgcgcacttgtag |
185 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
7669857 |
cagagtcaatgggctaacttacctcctgagttactattagacataattcaaagggtggaagctagtgaaaccacttggccatctctccgcgcacttgtag |
7669758 |
T |
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| Q |
186 |
cttgtgcctcagtttgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaagca |
285 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7669757 |
cttgtgcctcagtttgtagattgtggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcattgaagca |
7669658 |
T |
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| Q |
286 |
ggtaa |
290 |
Q |
| |
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||||| |
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| T |
7669657 |
ggtaa |
7669653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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