View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20863_high_1 (Length: 443)
Name: NF20863_high_1
Description: NF20863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20863_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 413
Target Start/End: Original strand, 48401670 - 48402073
Alignment:
| Q |
11 |
taatacttcctcgttgttttttaactgctcatgtgttttgtatatctcgtattattccatcgcattattatgcaactaattttccactgnnnnnnnn-gt |
109 |
Q |
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| T |
48401670 |
taatacttcctcgttgttttttaactgctcatgtgttttgtatatctcgtattattccatcgcattattatgcaactaattttccactgtttttttttgt |
48401769 |
T |
|
| Q |
110 |
tctcattgttatgaaagtgagacactcataagcaagtcaagtagtcaaacatgatatttgaacacatgttcttttatatctgattttaatctctatctct |
209 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48401770 |
tctcattgttatgaaaatgagacacacataagcaagtcaagtagtcaaacatgatatttgaacacatgttcttttatatctgattttaatctctatttct |
48401869 |
T |
|
| Q |
210 |
cttcctattttacttcatcacatcttacttttttgtctttttcactcttaagatgtatacacacacactttcatgtgttcaccaaacattttcctataaa |
309 |
Q |
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| T |
48401870 |
cttcctattttacttcatcacatcttacttttttgtctttttcactcttaagatgtacacacacacacgttcatgtgttcaccaaacattttcctataaa |
48401969 |
T |
|
| Q |
310 |
agagagcaaagcaacaaggagaatgggacaaaatgaaaggaatgcgccagaaggattcgtgggtggagatgagagccagaactgaaaccattgcatgctg |
409 |
Q |
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| T |
48401970 |
agagagcaaagcaacaaggagaatgggacaaaatgaaaggaatgcgctagaaggattcgtgggtggagatgagagccagaactgaaaccattgcatgctg |
48402069 |
T |
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| Q |
410 |
tctc |
413 |
Q |
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|||| |
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| T |
48402070 |
tctc |
48402073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 358 - 413
Target Start/End: Complemental strand, 6402311 - 6402254
Alignment:
| Q |
358 |
agaaggattcgtgggtgg--agatgagagccagaactgaaaccattgcatgctgtctc |
413 |
Q |
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| T |
6402311 |
agaaggattcgtgggtggggagatgagagccagaactgaaaccattgcatgctgtctc |
6402254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 413
Target Start/End: Complemental strand, 31877908 - 31877879
Alignment:
| Q |
384 |
gccagaactgaaaccattgcatgctgtctc |
413 |
Q |
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| T |
31877908 |
gccagaactgaaaccattgcatgctgtctc |
31877879 |
T |
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